mRNA_P-littoralis_Contig14.157.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE) HSP 1 Score: 121 bits (304), Expect = 7.300e-32 Identity = 75/156 (48.08%), Postives = 95/156 (60.90%), Query Frame = 1
Query: 40 CSACRRADDGTGLRKPRPRTAERIHQFGGESDVLVLFPKRLMASDDPLL--LCKRTGCLLKLFEQRE---NRERA--KHAGGPRKRRSSTQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNR 486
CSAC + G R+ R RT E + F E+ + FP + P L LCKR+GCLL+L+++ E +RER K PR R+ + PEPV H +RR FDRYCTSP AVDAL V+I G VLDMCGG DAVA+ G +C V+TNDV +R
Sbjct: 32 CSAC--LECGEDFRQTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMCGGPDDAVAMGFGGTCEVLTNDVSSR 185
BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5KD02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD02_9PHAE) HSP 1 Score: 108 bits (270), Expect = 3.980e-27 Identity = 67/141 (47.52%), Postives = 84/141 (59.57%), Query Frame = 1
Query: 88 RPRTAERIHQFGGESDVLVLFPKRLMASD---DPLLLCKRTGCLLKLFEQRENRERAKHAGGPRKRRSS-----TQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNR 486
R RT + F + V FP L D D L+LCKR GCLL+LF + +E + P KRR+ T PEPV L+RR FDRYCTSP+A++AL+ +VSI G VLD CGG DA+ RL +C V+TNDVR R
Sbjct: 2 RERTGGNVRSFVEAAGVADKFPA-LKCGDPDVDKLVLCKRGGCLLELFVLNKQKE----SRAPSKRRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGDVSISGCVLDTCGGAGDAIVTRLRDTCQVLTNDVRPR 137
BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5L2F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2F6_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.050e-26 Identity = 68/142 (47.89%), Postives = 86/142 (60.56%), Query Frame = 1
Query: 88 RPRTAERIHQFGGESDVLVLFPKRLMASDDP----LLLCKRTGCLLKLFEQRENRERAKHAGGPRKRRSS-----TQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNR 486
R RT + F + + FP + DP L+LCKR GCLL+LF + RE + P +RR+ T PEPV L+RR FDRYCTSP+A++AL+ VSI G VLDMCGG DAVA+RL +C V+TNDVR R
Sbjct: 2 RERTGGNVRAFLEAAGMGDKFPG--LKCGDPSIGKLVLCKRAGCLLELFVLNQQRE----SRAPTERRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVRPR 137
BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5JSC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC3_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 5.500e-18 Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 286 TQVPEPVAHLQRRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDV 477
T PEPV L+RR FDRYCTSP+A++AL+ VSI G VLDMCGG DAV RL +C V+TNDV
Sbjct: 11 TCAPEPVKQLKRRCFDRYCTSPTALEALLGVVSISGCVLDMCGGPGDAVVTRLRDTCQVLTNDV 74
BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Match: A0A6H5KES8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES8_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 4.240e-14 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 88 RPRTAERIHQFGGESDVLVLFPKRLMASDDPLL--LCKRTGCLLKLFEQRE---NRERA--KHAGGPRKRRSSTQVPEPVAHLQRRPFDRYCTSPSAVDAL 369
R RT E + F E+ + FP + P L LCKR+GCLL+L+++ E +RER K PR R+ + PEPV H +RR FDRYCTSP AVDAL
Sbjct: 23 RARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDAL 123 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig14.157.1 >prot_P-littoralis_Contig14.157.1 ID=prot_P-littoralis_Contig14.157.1|Name=mRNA_P-littoralis_Contig14.157.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp MEMEVCSACRRADDGTGLRKPRPRTAERIHQFGGESDVLVLFPKRLMASDback to top mRNA from alignment at P-littoralis_Contig14:661962..662450- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig14.157.1 ID=mRNA_P-littoralis_Contig14.157.1|Name=mRNA_P-littoralis_Contig14.157.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig14:661962..662450- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig14:661962..662450- >mRNA_P-littoralis_Contig14.157.1 ID=mRNA_P-littoralis_Contig14.157.1|Name=mRNA_P-littoralis_Contig14.157.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig14:661962..662450- (Pylaiella littoralis U1_48)back to top |