mRNA_P-littoralis_Contig14.136.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.136.1
Unique NamemRNA_P-littoralis_Contig14.136.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:583266..584688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size318
Hectar predicted targeting categoryother localisation
Exons3
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.5358653-CDS-P-littoralis_Contig14:583265..5832921680789645.5358653-CDS-P-littoralis_Contig14:583265..583292Pylaiella littoralis U1_48CDSP-littoralis_Contig14 583266..583292 -
1680789645.5501673-CDS-P-littoralis_Contig14:583752..5839141680789645.5501673-CDS-P-littoralis_Contig14:583752..583914Pylaiella littoralis U1_48CDSP-littoralis_Contig14 583753..583914 -
1680789645.5590305-CDS-P-littoralis_Contig14:584560..5846561680789645.5590305-CDS-P-littoralis_Contig14:584560..584656Pylaiella littoralis U1_48CDSP-littoralis_Contig14 584561..584656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.5686424-UTR-P-littoralis_Contig14:584656..5846881680789645.5686424-UTR-P-littoralis_Contig14:584656..584688Pylaiella littoralis U1_48UTRP-littoralis_Contig14 584657..584688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.136.1prot_P-littoralis_Contig14.136.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 583266..584656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.136.1

>prot_P-littoralis_Contig14.136.1 ID=prot_P-littoralis_Contig14.136.1|Name=mRNA_P-littoralis_Contig14.136.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp
MEHGLEKVVVPSAIPPSEAKVVSNPHHNSVCMVSAQYPTHVKGTGILVDY
EGYPCIVAGAHLMPSPVATSKALAHFVLPGMLHPVKIPLRPEALF
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mRNA from alignment at P-littoralis_Contig14:583266..584688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.136.1 ID=mRNA_P-littoralis_Contig14.136.1|Name=mRNA_P-littoralis_Contig14.136.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1423bp|location=Sequence derived from alignment at P-littoralis_Contig14:583266..584688- (Pylaiella littoralis U1_48)
GCGGGTAGTGCGCATAGGTGCAGCACAATATCATGGAGCATGGCCTCGAG
AAAGTGGTGGTGCCGTCTGCAATACCGCCTTCAGAGGCAAAAGTGGTCAG
CAACCCTCACCACAACAGCGTGTGCATGGTACGGTTTTCCACGGAGAGTA
CAGCCTTCATTTGCATCTCAGTCCGCACGCGGCTCATGATGATGCTGTTG
ACCTTCCAGTACGCCATTGATGTCTTGCCTGCTGAGCCGTGCACTTGCTC
GAACTGCGACTGTTGGCGTGTCTTAGTCGCTTTTTCTGAATGTCGAGCTT
CAGGAGAAACGGAAAAAATCAAAATGCATGAAATATGTGTGTATCCTTTG
TGCGGGTATGATTACTTCTTGTGTTCTGCAAATCATAACATACATGCCTC
ATGCATAGTCCTCGCAGCAGTCACAGCAGTATCACAGCTGTGGGAGTGTC
ACGACGAAGGTATTATCAGGTCGGCCGAGCCGACAACGCCTTGGGTGGAA
AGGTAGAACATCGTTTTAACCTCATACGGGGTTCGACCATCCGCAATACT
TTGGGACCTCTGCTATCATGGTAAGTCCCGCCGTTACCTCAGTTCTAAAA
AACGTCGAAAGTAAAAGGATTAGAGGCTCAAGCGAAATTGAAATTTTGGT
GTTGTCCGATGCCTAGCGCTGTACAGCAGTATTCGCAAATGCTACAGGTA
CGTGGTGAGGGCACAATGATTCCCTCATGAGATACTGGGGCTTCTTCGCA
ACCACCCCCGCGTAATGACGGCAGGTAAGCGCGCAATACCCGACTCACGT
TAAGGGAACTGGAATCCTCGTGGACTATGAGGGCTACCCCTGCATCGTCG
CGGGCGCCCATCTCATGCCCAGCCCCGTCGCCACATCCAAAGCGCTGGCG
CATTTTGTGCTGCCTGGGATGCTTCATCCTGTTAAGGTGCGACATCCGGG
CTACTTGCATTGCTACGCACTGCTATGGGGGACCTACCGCGCCATTCGTG
CACATTTTCCCATCAGAACGGATGATACAGTCCATGTGAGGGGACAATCT
CTGCTGCAGCTGGGATTCTACGGACATATGCAAGCTGTGAACAAGTGGCG
GCGTCCGAGGCTTCGGCGCCGTGTGCCTGGAATTCCAAGGGTTCACTGCT
GTAGTTCAAACGGCCGATCTATGTTCCATCGCAGCCCCTTTATTCGTTGA
GACCATTCTGGGAATAAAAAGGTTAATCTTGTACCTCCAATTATATGTGC
AACTAAACACTGTCTGTTGTTTCACACTGCCGCGTTGCCGTGAAGAACAC
CTTTTTGATCTAGTTGTGGTCTGACCTTCAAAAACAGAAGCACCCAGTGT
TGCTGTAACGTTCGACACCCCCATTATCCGGTTCCTCGACAAATAGATAC
CCCTTCGACCGGAGGCATTGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:583266..584688-

>mRNA_P-littoralis_Contig14.136.1 ID=mRNA_P-littoralis_Contig14.136.1|Name=mRNA_P-littoralis_Contig14.136.1|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig14:583266..584688- (Pylaiella littoralis U1_48)
ATGGAGCATGGCCTCGAGAAAGTGGTGGTGCCGTCTGCAATACCGCCTTC
AGAGGCAAAAGTGGTCAGCAACCCTCACCACAACAGCGTGTGCATGGTAA
GCGCGCAATACCCGACTCACGTTAAGGGAACTGGAATCCTCGTGGACTAT
GAGGGCTACCCCTGCATCGTCGCGGGCGCCCATCTCATGCCCAGCCCCGT
CGCCACATCCAAAGCGCTGGCGCATTTTGTGCTGCCTGGGATGCTTCATC
CTGTTAAGATACCCCTTCGACCGGAGGCATTGTTC
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