mRNA_P-littoralis_Contig1396.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1396.2.1
Unique NamemRNA_P-littoralis_Contig1396.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.030e-32
Identity = 65/128 (50.78%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 KNADGTFKRLFVMLGRAAHACAQSPLKFICVDAGHLKGSWKGQMLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHL 384
            +   G F+ +FVMLGRAAHA  +SP+K + +D GHLKG W G ML +TCKDANN  + VATVI  KED+S Y+ L    KKN +M  +L   KTT +TDQH     AL   A     R+CL HLI +L
Sbjct:  166 RETTGRFRSVFVMLGRAAHAAVRSPIKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNL 293          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5KNP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.080e-32
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    1 KNADGTFKRLFVMLGRAAHACAQSPLKFICVDAGHLKGSWKGQMLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHLP 387
            ++ DG+FKR+ +++ RAA   A+   KF+ VD GH+KG+WKG +L+   KD NN LV VA VICDKE+S+NY +L+  MKKN  ++A L SP TT+Y+D++     A+   A +   R C  HL  + P
Sbjct:   65 RHPDGSFKRIAIVVNRAALVIARGLFKFLQVDGGHMKGTWKGMVLVAAGKDTNNNLVLVAFVICDKENSTNYEFLFSEMKKNVHLKAPLESPLTTIYSDENNGIKSAIEIEASDIIHRLCCKHLANNFP 193          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.980e-29
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 KNADGTFKRLFVMLGRAAHACAQSPLKFICVDAGHLKGSWKGQMLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHL 384
            +   G F  +FVMLGRAA A  +SP+K + +D GHLKG W G ML +TCKDA+N ++ VATVI  KED+S Y+ L  R  KN +M  +L   KTT +TDQH     AL + A     R+CL HLI +L
Sbjct:  208 RETTGRFPSVFVMLGRAARAAVRSPVKVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLL-RNCKNPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNL 334          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.420e-29
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   16 TFKRLFVMLGRAAHACAQSPLKFICVDAGHLKGSWKGQMLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHLPAV 393
            +F+R+ +MLGRAA A  +SP+K +  D GHLKG W G +L +TCKDANN ++ VATVI  KED+S Y+ L    KKN +M  +L   KT  +TDQH     AL   A     R+CL H+I ++  +
Sbjct:  148 SFRRVILMLGRAARAAVRSPMKVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHIILNIEKI 273          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.280e-26
Identity = 58/130 (44.62%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   85 ICVDAGHLKGSWKGQMLLVTCKDANNTLV-----------------------------QVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHLP 387
            +CVDAGHLKG W G ML+ T KDA+  LV                              VAT ICDKE++ NY W Y  MK N +M  +LNSPKTT++TD+H SH PA+   A N   R+CL H I+ LP
Sbjct:   66 LCVDAGHLKGDWNGMMLVATSKDADTKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALP 195          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5KMN6_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.140e-25
Identity = 56/120 (46.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 KNADGTFKRLFVMLGRAAHACAQSPLKFICVDAGHLKGSWKGQMLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFC 360
            +   G F+ LF MLGRAA+A  +SP+K + +D  HLKG W GQML +TCKDANN  + VAT I   E++  Y+ L    KKN +M   L   KTT YTDQH     AL   A     R C
Sbjct:  166 RETTGRFRSLFFMLGRAAYAAVRSPIKVVGMDGAHLKGKWNGQMLTLTCKDANNENIHVATAIGPVENTDLYKTLIRGCKKNPKMRDFLEDSKTTFYTDQHKGGKCALEGEAPLAQHRNC 285          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.060e-23
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   76 LKFICVDAGHLKGSWKGQMLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLI 375
            L  + +D GHLKG W G ML +TCKDANN ++ VATVI  KED+S Y+ L    KKN +M  +L   KTT +TDQH     AL   A     R+CL HLI
Sbjct:    7 LVVVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLI 106          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.520e-21
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  130 MLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHLP 387
            ML+ T  DA+N L+ VAT ICDKE++ NY W Y  MK N EM  +LNSPKTT++TD+H SH PA+   A     R+CL H+IR LP
Sbjct:    2 MLVATGMDADNRLMHVATGICDKENADNYSWFYRMMKNNAEMAKVLNSPKTTLFTDKHLSHEPAIRVHASKPVWRWCLRHVIRRLP 87          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5L0I2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.070e-21
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  130 MLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHLPAVKELCGR 411
            ML+ T  DA+N LV VAT ICDKE++ NY W Y  MK N +M  +LNSPKTT++TD+  SH P +   A N   R+CL H   H+ A+ E  G+
Sbjct:    2 MLVATGTDADNKLVHVATSICDKENTDNYSWFYRMMKNNVDMAEILNSPKTTLFTDKRKSHEPTITLHAPNTVWRWCLRH---HIKALAEASGQ 92          
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Match: A0A6H5KCW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.720e-21
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  130 MLLVTCKDANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQHASHGPALAQFAKNCWRRFCLVHLIRHLP 387
            ML+ T  DA+  LV VAT ICDKE++ NY W Y  MK N +M  +LNSPKTT++TD+H SH PA+   A N   R+CL H I+ LP
Sbjct:    2 MLVATGTDADTKLVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALP 87          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1396.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCT1_9PHAE1.030e-3250.78MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KNP1_9PHAE1.080e-3244.96MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUM0_9PHAE1.980e-2949.22MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAG6_9PHAE5.420e-2946.03MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K832_9PHAE2.280e-2644.62MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KMN6_9PHAE1.140e-2546.67MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K734_9PHAE1.060e-2350.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0L7_9PHAE1.520e-2154.65MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0I2_9PHAE2.070e-2148.94MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCW3_9PHAE2.720e-2153.49MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1396contigP-littoralis_Contig1396:968..2640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog90675.XP_010468544.1
PFAMsDBD_Tnp_Mut,MULE,SWIM
Model size421
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.88e-11
EggNOG OGs29CIJ@1|root,2RJNC@2759|Eukaryota,37THD@33090|Viridiplantae,3GEBB@35493|Streptophyta,3HYCN@3699|Brassicales
DescriptionMULE transposase domain
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.5800097-CDS-P-littoralis_Contig1396:967..10481680789644.5800097-CDS-P-littoralis_Contig1396:967..1048Pylaiella littoralis U1_48CDSP-littoralis_Contig1396 968..1048 +
1680789644.5895896-CDS-P-littoralis_Contig1396:1707..20221680789644.5895896-CDS-P-littoralis_Contig1396:1707..2022Pylaiella littoralis U1_48CDSP-littoralis_Contig1396 1708..2022 +
1680789644.604615-CDS-P-littoralis_Contig1396:2617..26381680789644.604615-CDS-P-littoralis_Contig1396:2617..2638Pylaiella littoralis U1_48CDSP-littoralis_Contig1396 2618..2638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1396.2.1prot_P-littoralis_Contig1396.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1396 968..2638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1396.2.1

>prot_P-littoralis_Contig1396.2.1 ID=prot_P-littoralis_Contig1396.2.1|Name=mRNA_P-littoralis_Contig1396.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
KNADGTFKRLFVMLGRAAHACAQSPLKFICVDAGHLKGSWKGQMLLVTCK
DANNTLVQVATVICDKEDSSNYRWLYGRMKKNTEMEAMLNSPKTTVYTDQ
HASHGPALAQFAKNCWRRFCLVHLIRHLPAVKELCGRIE
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mRNA from alignment at P-littoralis_Contig1396:968..2640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1396.2.1 ID=mRNA_P-littoralis_Contig1396.2.1|Name=mRNA_P-littoralis_Contig1396.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1673bp|location=Sequence derived from alignment at P-littoralis_Contig1396:968..2640+ (Pylaiella littoralis U1_48)
AAAAATGCGGACGGCACGTTCAAGCGGCTGTTCGTCATGCTCGGCCGTGC TGCTCACGCTTGTGCGCAAAGTCCCCTGAAGGTATTTGGAAGGACCCACT TGAAAGAGTAGTATCCCGACGTCTTGTTGCACGTTGCACGTCGACGTCCA TGCGCCAAACGTTGTTGAAAGTGTGTGTTGTCATCCGATCTATTGAGGAC ACCAGTCGACACCTTTCGGAATGTTCGGGCGCCTCAGTCGGGGTAGACAC AGGAGAAAGATCATTCCTCGGGTTTGAACAATTTCGCTGTATCTTCCGTT GTATTTTCTCCACGGTCCTCTTGCGGTTAGGTACGTGCGTTCATTGTTGG AGTTTCTCAATTTTTTTAATTGATTACTTGGAGGTTTTCGATCGAGAAGA GTGGCCGTTCCTTTTCGTTCGTCGATCCTTGAGTCGAATTAGTTTACTCG CGAAAAAACACACGGTGCACTCCTACGTGTATGTGAGCGTCCTAAAAAAC AATAACCGAGAATTCAACTCACGTCAAACACCAGAACGTTTCTCGACTCT CGGAGGCTTGTTCGAGCTTCACGAACGGAACAACCGGGGCGACCGGTTGA CGTGTTGCTTCACACCGCCATGAGGTTGACTTCTTGATTTTGCGGTTGCA TTGAACTCTTCAATATTTTACGTCATATTTGCACGGTATCACAAAGAGCA GACCTCCCTACCGCCTCACTACCCCCCCCCCCCCCCCCAGTTTATCTGCG TCGATGCAGGCCATCTGAAGGGCTCGTGGAAAGGGCAGATGCTGCTCGTG ACCTGCAAAGACGCCAACAACACCCTGGTGCAAGTAGCGACCGTCATCTG CGACAAGGAGGACAGTAGCAACTACAGGTGGCTGTACGGCAGGATGAAGA AGAACACCGAGATGGAGGCGATGCTCAACAGCCCCAAGACGACCGTCTAC ACGGACCAGCATGCTTCTCATGGGCCTGCGCTGGCTCAGTTTGCCAAAAA CTGCTGGCGAAGGTTTTGCCTGGTGCACCTGATACGGCATTTACCTGCCG TGAAGGTAAGAGCAACTTGTTACGATCTAGCGTCGTCCATGTGTGTTCGT GCCCAGTCTCTCATTTTCCCGACGAATCCGTGACAATTTCGTGCGAGTCG TCTAATGCCAAGACGTACAACCGCTTTGAGACGGGGAAAAGCCCCCAGGG TGAAAATCGTGTCGATATTGTTGTGTATTGTATGATTTGTTTTATTTATG AGTCTGATGCTCTTTTTTTTGAAAAACTTTTGCGGCTGTCTTTTTACTTG AGTTTTACTGCAAGTCTAATATGAAGAGCTATACACGTGTTTGCGGTGAG GAAATTCAATTGAGATCTTGAATGTAGAGTTGAATGTACCTTGTAACGAC CAGGTCAGGAAAAGACGTATAGACGGAACTCAAAATCTAAACATGAAATT CAAACTCTCCAAAGGATATGAAAAAAAACACACATCTAATCCACATTTGG AGATACATGATATATTGATATTTGATATTTTGCAAGGTGCAGACCAGTAC AGACGACCATCGTATTAACAAAAATCAGTGTGTTGCTGTTTTCACGGAGG CTCGCCGATTGGTTAAATCCACCCGGGTGACGTGTTGTGTACCTGTCCAG GAGCTGTGTGGGCGAATCGAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1396:968..2640+

>mRNA_P-littoralis_Contig1396.2.1 ID=mRNA_P-littoralis_Contig1396.2.1|Name=mRNA_P-littoralis_Contig1396.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig1396:968..2640+ (Pylaiella littoralis U1_48)
AAAAATGCGGACGGCACGTTCAAGCGGCTGTTCGTCATGCTCGGCCGTGC
TGCTCACGCTTGTGCGCAAAGTCCCCTGAAGTTTATCTGCGTCGATGCAG
GCCATCTGAAGGGCTCGTGGAAAGGGCAGATGCTGCTCGTGACCTGCAAA
GACGCCAACAACACCCTGGTGCAAGTAGCGACCGTCATCTGCGACAAGGA
GGACAGTAGCAACTACAGGTGGCTGTACGGCAGGATGAAGAAGAACACCG
AGATGGAGGCGATGCTCAACAGCCCCAAGACGACCGTCTACACGGACCAG
CATGCTTCTCATGGGCCTGCGCTGGCTCAGTTTGCCAAAAACTGCTGGCG
AAGGTTTTGCCTGGTGCACCTGATACGGCATTTACCTGCCGTGAAGGAGC
TGTGTGGGCGAATCGAG
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