mRNA_P-littoralis_Contig1395.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1395.2.1
Unique NamemRNA_P-littoralis_Contig1395.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1395.2.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.940e-7
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 LSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKV 156
            LSQP  LG+Y G+ PEEILR++ ESP VQ +W AC  AR+G   +   DP++
Sbjct:  301 LSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQAREGG--SFHADPEM 350
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1395.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7M3_9PHAE2.940e-751.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1395contigP-littoralis_Contig1395:2540..2886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size349
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.479106-CDS-P-littoralis_Contig1395:2539..28841680789644.479106-CDS-P-littoralis_Contig1395:2539..2884Pylaiella littoralis U1_48CDSP-littoralis_Contig1395 2540..2884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1395.2.1prot_P-littoralis_Contig1395.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1395 2540..2884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1395.2.1

>prot_P-littoralis_Contig1395.2.1 ID=prot_P-littoralis_Contig1395.2.1|Name=mRNA_P-littoralis_Contig1395.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
LSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDP
KVSREVFEFVTRKYQNCRMGDWNLDLTDTSTMEWEKEYSQGVKECDDDFM
KQPVVLPGEIEGGSE
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mRNA from alignment at P-littoralis_Contig1395:2540..2886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1395.2.1 ID=mRNA_P-littoralis_Contig1395.2.1|Name=mRNA_P-littoralis_Contig1395.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=347bp|location=Sequence derived from alignment at P-littoralis_Contig1395:2540..2886+ (Pylaiella littoralis U1_48)
CTGTCACAGCCATTTCTTTTGGGCGCGTATCGCGGCGACTTTCCGGAGGA
GATTTTGCGGGTGATACTAGAATCACCCGCAGTTCAAAGTAGTTGGGCAG
CTTGCTGGACGGCTCGTGACGGGGACGGTGAAGCCATCGCTGTTGATCCC
AAAGTGTCACGTGAAGTGTTCGAATTCGTGACTCGTAAATACCAGAATTG
CCGTATGGGAGACTGGAACCTTGACTTGACGGATACATCCACGATGGAAT
GGGAAAAGGAATATAGCCAGGGAGTCAAGGAGTGCGACGATGACTTCATG
AAGCAACCAGTCGTCCTTCCGGGTGAGATCGAGGGGGGTTCCGAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1395:2540..2886+

>mRNA_P-littoralis_Contig1395.2.1 ID=mRNA_P-littoralis_Contig1395.2.1|Name=mRNA_P-littoralis_Contig1395.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig1395:2540..2886+ (Pylaiella littoralis U1_48)
CTGTCACAGCCATTTCTTTTGGGCGCGTATCGCGGCGACTTTCCGGAGGA
GATTTTGCGGGTGATACTAGAATCACCCGCAGTTCAAAGTAGTTGGGCAG
CTTGCTGGACGGCTCGTGACGGGGACGGTGAAGCCATCGCTGTTGATCCC
AAAGTGTCACGTGAAGTGTTCGAATTCGTGACTCGTAAATACCAGAATTG
CCGTATGGGAGACTGGAACCTTGACTTGACGGATACATCCACGATGGAAT
GGGAAAAGGAATATAGCCAGGGAGTCAAGGAGTGCGACGATGACTTCATG
AAGCAACCAGTCGTCCTTCCGGGTGAGATCGAGGGGGGTTCCGAG
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