mRNA_P-littoralis_Contig1394.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1394.1.2
Unique NamemRNA_P-littoralis_Contig1394.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 469 bits (1207), Expect = 5.430e-161
Identity = 221/265 (83.40%), Postives = 236/265 (89.06%), Query Frame = 3
Query:  414 LFWKHLKLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQSTWEHNV 1208
            +F     LSWMS+  VQK FH+FC+HFATEMYDEHIFLP++ENGELDRVMGQYEKLGFPGA+GSTDVTHI W RCPYNQ RSYTGKEGKPT+GYQVTVNHAGRVLAVTEGFTGSTNDKTIIC D AVDRIR DKQY EK F V+ KDGTT TLKGCYLIVDNGYHKWR LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK+RFRILKLAMTYQ+QER+DYVFFTCCILH MLHT DGM  LEE+VNWV SAELQ+T  HN+
Sbjct:  140 VFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNL 404          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 1.730e-141
Identity = 191/249 (76.71%), Postives = 214/249 (85.94%), Query Frame = 3
Query:  432 KLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSA 1178
            ++SWMS+  VQ  FHKFCKHFA EMYDEHI+LP+++NGELD VM QY++LGF GA+GS DVTHI W +CPYN ARSYTGKEG PT+GYQVTVNHAGR +AVTEGFT STNDKT +CWDA V++IR D QYTEKTFDVYN+DGTT TLKGCYL+VDNGYHKW+ L+EP+KYPLS  D+LFSKRLESVRKDVECFFGILK  FRI K+AM Y EQERID VFFTCCILH MLHT DGMD L EN  WVSSA
Sbjct:  117 QVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSA 365          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 409 bits (1050), Expect = 1.890e-137
Identity = 200/282 (70.92%), Postives = 219/282 (77.66%), Query Frame = 3
Query:  432 KLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYT----------------------------EKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
            ++SWMS+  VQ  FHKFC+HFA EMYDE I LPT+E+G+LD VM QY++LGF GAVGS DVTHIAW RCPYNQARSYTGKEG PTI YQVTV+HAGR +AVTEGFTGSTNDKTI+CWD AV++I  DK YT                            EKTFDVYN+DGTT TLKGCYL+VDNGYHKW+ LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QERID VFFTC ILH MLHT DGMD L EN NWVSSA + +T
Sbjct:  104 QMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGAT 385          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 2.840e-133
Identity = 184/230 (80.00%), Postives = 203/230 (88.26%), Query Frame = 3
Query:  504 MYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
            MYDEHI LPT+E+G+LD V+ QY++LGF GA+GS DVTHIAW RCPYNQARSYTGKEG PTIGYQVTV+HAGR +AVTEGFTGSTNDKT +CWDAAV++IR DKQYTEKTFDVYN+DGTT TLKGCY++VDNGYHKW+ LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK R RIL LAM +Q QERID VFFTCCILH MLHT DGMD L EN NWVSSA + +T
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTT 230          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 2.090e-127
Identity = 183/255 (71.76%), Postives = 203/255 (79.61%), Query Frame = 3
Query:  429 LKLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
             ++SWMS+  VQ  FHKFC+ FA EMYDEHI LP +E+G+L  VM QY++LG                 CPYNQARSYTGK+  PTI YQVTV+HA R +AVTEGFTGSTNDKTI+CWDAAVD+IR DKQYTEKTFD+YN+DGTT TLKGCY + DNGYHKW+ LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QERID VFFTCCILH MLHT DGMD L EN NWVSSA + +T
Sbjct:   38 FQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTT 275          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 2.190e-115
Identity = 169/257 (65.76%), Postives = 198/257 (77.04%), Query Frame = 3
Query:  435 LSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQSTWEHN 1205
            +S++S      TFH+F ++FA EMY EHIFLPT +  +  +VM QY++LGF GA GSTDVTHI WG CPYNQARSYTGKEG PT+ YQVTV+H  RVLAVT GFTGSTNDK+II +D AV +IR+D  Y+EK F VY  DGT   LKGCYL+VDNGYHKW TLI PSKYP+   DL FSKRLESVRKDVECFFGI+K RFRILKL++ Y +QE ID VFFTCCILH MLH+ D   ++EE  NW  +A L + WEHN
Sbjct:  178 MSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHN 432          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 8.990e-115
Identity = 165/252 (65.48%), Postives = 199/252 (78.97%), Query Frame = 3
Query:  435 LSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQS 1190
            +S++S   V  TFH+FCK+FA E+YDE+++LPT E  +L +VM QY+++GFPGAVGSTDVTHI WG CPYNQAR YTGKEGKPT+ +QVTV+H+GRVLAVT GFTG+TNDKTII +D AV RIR D  YTE+ + +Y +DG     KGCYL+VDNGYHKWRTLI PSK P+  GDL+FSKRLES RKDVEC+FGILK RFRI KLA+ + +QE ID VFFTCCILH MLH+ D   D+ E  NW  SA L +
Sbjct:  103 MSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGE--DLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHN 352          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 1.570e-113
Identity = 165/252 (65.48%), Postives = 199/252 (78.97%), Query Frame = 3
Query:  435 LSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQS 1190
            +S++S   V  TFH+FCK+FA E+YDE+++LPT E  +L +VM QY+++GFPGAVGSTDVTHI WG CPYNQAR YTGKEGKPT+ +QVTV+H+GRVLAVT GFTG+TNDKTII +D AV RIR D  YTE+ + +Y +DG     KGCYL+VDNGYHKWRTLI PSK P+  GDL+FSKRLES RKDVEC+FGILK RFRI KLA+ + +QE ID VFFTCCILH MLH+ D   D+ E  NW  SA L +
Sbjct:  194 MSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGE--DLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHN 443          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 4.600e-100
Identity = 151/257 (58.75%), Postives = 182/257 (70.82%), Query Frame = 3
Query:  432 KLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQSTWEH 1202
            +LS MS ++ Q TFHKFC+HFA EM+DEHI+LPT     LD VMG + +LG+ GA GSTDVTHI W  CP+   RS+TGKEG PTI Y VTV+H GR LAVT GFTG+TNDKTII +D+ V++IR   QYTE+ + +   +GT R  +GC+LIVDNGYH+W TLI PSKYP    D  FS+ LESVRKDV CF        RILKL M Y ++E +D +FFTCCILH MLHT DG+D  EEN +W  SA     WEH
Sbjct:   55 QLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTY--LDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEH 301          
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 7.760e-93
Identity = 155/263 (58.94%), Postives = 176/263 (66.92%), Query Frame = 3
Query:  405 QRELFWKHLKLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
            +   F    ++SWMS+  VQ  FHKFC+HFA +MYDEHI L  +E+G+LD V+      G                 CPYNQARSYTGKEG PTI YQV                      TI+CWDAAV++IR DKQYTEKTFDVYN+DGTT TLKG YL+VDNGYHKW+ LIEPSKYPLS  DLLFSKRL+SVR+D     GILK RFRILKLAM YQ QERID VFFTCCI+H MLHT DGMD L EN   VSSA + +T
Sbjct:  182 RNNCFASIFQVSWMSAKTVQGMFHKFCRHFARDMYDEHIHLLAEESGKLDHVVRSGWVYG-----------------CPYNQARSYTGKEGFPTIAYQVV---------------------TIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGAT 406          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE5.430e-16183.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.730e-14176.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.890e-13770.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI2.840e-13380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUX7_9PHAE2.090e-12771.76DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE2.190e-11565.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE8.990e-11565.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.570e-11365.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE4.600e-10058.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE7.760e-9358.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1394contigP-littoralis_Contig1394:15283..18685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size1210
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.81e-136
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size765
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.2576292-UTR-P-littoralis_Contig1394:15282..156601680789644.2576292-UTR-P-littoralis_Contig1394:15282..15660Pylaiella littoralis U1_48UTRP-littoralis_Contig1394 15283..15660 +
1680789644.2698588-UTR-P-littoralis_Contig1394:17532..175971680789644.2698588-UTR-P-littoralis_Contig1394:17532..17597Pylaiella littoralis U1_48UTRP-littoralis_Contig1394 17533..17597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.27823-CDS-P-littoralis_Contig1394:17597..180651680789644.27823-CDS-P-littoralis_Contig1394:17597..18065Pylaiella littoralis U1_48CDSP-littoralis_Contig1394 17598..18065 +
1680789644.2867846-CDS-P-littoralis_Contig1394:18388..186851680789644.2867846-CDS-P-littoralis_Contig1394:18388..18685Pylaiella littoralis U1_48CDSP-littoralis_Contig1394 18389..18685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1394.1.2prot_P-littoralis_Contig1394.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1394 17598..18685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1394.1.2

>prot_P-littoralis_Contig1394.1.2 ID=prot_P-littoralis_Contig1394.1.2|Name=mRNA_P-littoralis_Contig1394.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp
MSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPG
AVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEG
FTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIV
DNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRIL
KLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST
WEHNV
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mRNA from alignment at P-littoralis_Contig1394:15283..18685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1394.1.2 ID=mRNA_P-littoralis_Contig1394.1.2|Name=mRNA_P-littoralis_Contig1394.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3403bp|location=Sequence derived from alignment at P-littoralis_Contig1394:15283..18685+ (Pylaiella littoralis U1_48)
GCAGCAGAGGGAGAAGGTATCGATGGCCTCTTGCCAGAAATTGCATTCGC AACCGCCTTGGCTGTTCTCGATGCGATCCAACAAGACGGCATGCTATCAG ATGTGGAGGACGAGCCCGCTGAGGAACTACCGTGAGTGCAGATGGGGCGA AGACAGAGGCAGAGGAAAGACGGCAGCACGTGTGCTTGGGCACAGCTGCT CCGGGAGGAAGAGCTGCTGAAGGACAGCACGAGCATAGAAGCAAAGAAGT TTCGAGAGGACTTTCGCATCCCGTACCCTTTCTTCCTGCGGCTTATGGAA GTGGTCAAGAGCAAGGACTGGTTTGCCACTGCTCAGCACGACGCATCAGG GCGGCAAGGCCACCCAGTGGAGCATAAGGTGAGGTTAAGAGGTGCTTCAC TCACTACTTTGGCGGTTGTACAGGTGGTGGAAGCAGTAGACCGTCTGCAT GCATGTCTTGCACTATGGAGATGTGAATTAAAAATATCGTACTAAATATA GAGTGCTGCAGGTACTGCTGTACGATATCATTTGTATCATACACCAAGTA CCTCGTATTAAAGTCTACTTCGTTCAGAGATGCCGTACTTAGCAGCAACA GCGTTGCTTCCGTTCCTGTATACGTATCATACATACGAGGATACAAAAAT GATGTGCCCGCCCCTCTTACAGCACTAAAGCTGGTACACCTGTACAGCAC TAGTGAGGCTGCAAAAAATACTACTGTTCTCTCGTTGATGGTCGATGGGC ATTGCTGCATGTATTGGTGTCGCGTTTTACTCGGGTGCAGGCAGTGCCTG GTTGCGTATTTTCTCGTTATCGTAGCGATCCCATAGCTGCGTAAAAAAGG CTTATTTTTCTCATGAAGCCTCAACAACACAATGATCCAGCGATAGGATA TCACATGACCTTCGTATTTCTCCTTGATAAGCGACGTACCCGACAATGTT CGTGTCCGTGTCAGCTGTCGCCTTCTAGAGCAGTACTGGTACTAGAATGT CGGTGCCGCGATGTTCTAGTGTGCAGGCAACTCCTGGATGCCGACATGTG CCGATTAGTATAAGATTATCACACCAGTGACAAAAGACTGCAGTCAGAAC ACCACTAATGAGACCGTTTTTTACGGCTCCGTTATTTGGTCCAGCGTTTT TTCTCCTGAGCTATcCCCCCCCCCCCCCCAATGAAAGAGAGCCCAAACGG TTGAAAAATATACTTCTTGAGCACAACAGGAGATAGCACCGAGCAGAACT CGACCCCTGGGACACCAATCGAGACTATACCTGTTAGACGGTACGCTCTA GTGTTCTCAGGTTGGCCACAGGAAATTGGTGGGTGTGGACTTTGGCTGTG GCGAGGTTTTGGCGGCGGAGTGGGTTGAGGTAGGAAAATCCGATGGAAAA AAAACGCTGTCCGAGCCCGGTTTTTGGCCGGAAAAACAGGAGCGAAGACT GTTATTTTGTTTCATCTGTTTTTCCATCTCCAACACACACCGCCGCCAAA ATCTCGCCACAGCCCGAACCCACTGCCACCAAACTTCCTGTGGTCAACTT GAGAACGTAGGAGCACACGATCTATCAGGTTTGATTGGCATCTGTGTCGT AGGGGTCGAGTTCTGGTTGGTACTGTCTCATGACGTGTGCAATGGCGATC AAACCTATCGCCCCGTCGCTTCAGTGTTCTGCGATTGGCCATGGCAAGTT TGACGGGTGTGGGCCTTAGCTGCTGTAAGATTTTGCCGGTGGTGTACGTC GTGGTAGAATAAACAATGCCAAAAGAATGCTGTTCGAGTAGGCTCGCACG GAAACAAAACAGGCTCGAACACAACAGTCCACACGTATTTTGTTTTTTTG TCATTGTTTGGGATACCTCAACCCACACCGCCGCCAAAACGAATTCGACA CAGCAAAAGCCCACACCCACCAAACTCCTTTCGGCTAAAACCTCAGCACT CGGGAGTGCACGCTCCGACAGGTTTGATCGCCATCGCTGCGTGCCAGAGG CCAAGTTCTGGCTGGTGTTGCCGCGTGATGTGCTCAACAGTGGTTTGTTC GGTCGTTGGGAATCTTCTCCGTTTTCGGGGGGGGGGGGGGGGATCAAAAC GATACAATACTCAGGAAACAAGAACCGTATGACCAGCCTCACATTGTTCG CACCTTCTTATTTTGATAAAGCACAACACCTTACATGACACCTTGTGGCT GATTGCGTGGATTCCCGTCCCATCAACAAATGTTGCGGTTGGTGCTATAG ATGATGGCCTGCCTGACCATACTCGCCAGAGGGAACTGTTTTGGAAGCAT CTAAAGCTTTCGTGGATGAGCAGCGCGGTAGTGCAGAAGACGTTCCACAA ATTCTGCAAGCACTTCGCGACGGAAATGTACGACGAGCACATCTTCCTCC CGACGGACGAGAACGGCGAGCTTGACCGCGTTATGGGACAGTACGAGAAG CTGGGGTTCCCGGGCGCAGTGGGTTCCACTGATGTTACCCATATAGCGTG GGGTAGGTGCCCCTACAACCAAGCCCGTTCGTACACTGGAAAGGAAGGCA AGCCTACCATCGGGTACCAGGTGACGGTCAACCACGCTGGGCGCGTGTTG GCCGTGACAGAGGGGTTCACAGGGTCCACCAACGACAAGACGATCATCTG CTGGGATGCAGCGGTGGACCGGATTCGCAAAGACAAGCAGTACACGGAAA AGACATTTGACGTCTACAACAAGGATGGCACCACGCGAACCCTGAAGGGT TGCTACTTGATCGTTGACAATGGTTACCACAAGGTGAAAAATGTTTGGTA TCACATGGAACGCGATTGTGTTGTTGTCGAATCGCATAGGCATTTTTGGC CTAAAAAAAGTTCCTCCCAGTTAGCCGCGCTTAAAATTGTCCCCCAGGTC CTCTTGGGTGCTGTGGACATGATTGTGTGACACTGAACTGCTCCCCATAA TGGTGTTGTTGAAGCTGTGGGGGGATGAAGCAGCTGACAAGTTTACACAG TTTGTTTAGTACCCAATCCTCAATATGAAACGCGGTACAGGACGAGATAT TGATACTTGATCATTCCAGGTGCACCCTTTTTTTCCTGTTGGTTCGTTCC ATTCAGTGGCGGACGCTGATCGAGCCCTCCAAGTACCCGCTGAGCGTAGG CGACTTGCTCTTCTCGAAGAGGCTGGAGAGCGTAAGGAAGGATGTGGAGT GCTTCTTCGGCATTCTGAAGATTCGCTTCAGAATCCTCAAGCTCGCCATG ACCTACCAGGAGCAGGAGCGCATTGACTACGTGTTCTTCACGTGCTGCAT CCTGCACATCATGCTGCATACCTCCGACGGCATGGACGACCTGGAGGAGA ACGTCAACTGGGTCAGCAGTGCCGAGCTCCAGAGCACGTGGGAGCACAAC GTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1394:15283..18685+

>mRNA_P-littoralis_Contig1394.1.2 ID=mRNA_P-littoralis_Contig1394.1.2|Name=mRNA_P-littoralis_Contig1394.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1394:15283..18685+ (Pylaiella littoralis U1_48)
ATGAGCAGCGCGGTAGTGCAGAAGACGTTCCACAAATTCTGCAAGCACTT
CGCGACGGAAATGTACGACGAGCACATCTTCCTCCCGACGGACGAGAACG
GCGAGCTTGACCGCGTTATGGGACAGTACGAGAAGCTGGGGTTCCCGGGC
GCAGTGGGTTCCACTGATGTTACCCATATAGCGTGGGGTAGGTGCCCCTA
CAACCAAGCCCGTTCGTACACTGGAAAGGAAGGCAAGCCTACCATCGGGT
ACCAGGTGACGGTCAACCACGCTGGGCGCGTGTTGGCCGTGACAGAGGGG
TTCACAGGGTCCACCAACGACAAGACGATCATCTGCTGGGATGCAGCGGT
GGACCGGATTCGCAAAGACAAGCAGTACACGGAAAAGACATTTGACGTCT
ACAACAAGGATGGCACCACGCGAACCCTGAAGGGTTGCTACTTGATCGTT
GACAATGGTTACCACAAGTGGCGGACGCTGATCGAGCCCTCCAAGTACCC
GCTGAGCGTAGGCGACTTGCTCTTCTCGAAGAGGCTGGAGAGCGTAAGGA
AGGATGTGGAGTGCTTCTTCGGCATTCTGAAGATTCGCTTCAGAATCCTC
AAGCTCGCCATGACCTACCAGGAGCAGGAGCGCATTGACTACGTGTTCTT
CACGTGCTGCATCCTGCACATCATGCTGCATACCTCCGACGGCATGGACG
ACCTGGAGGAGAACGTCAACTGGGTCAGCAGTGCCGAGCTCCAGAGCACG
TGGGAGCACAACGTG
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