mRNA_P-littoralis_Contig1390.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1390.2.1
Unique NamemRNA_P-littoralis_Contig1390.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1390.2.1 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.310e-35
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 PTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEVG 246
            PTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW  RL+ WI+ P VLEAG +  +EE ALHYL CIINHVEEVG
Sbjct:   74 PTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGWEGRLRAWISQPEVLEAGLQDYQEERALHYLSCIINHVEEVG 155
[Close]
BLAST of mRNA_P-littoralis_Contig1390.2.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.520e-29
Identity = 57/82 (69.51%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    1 PTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEVG 246
            PT  LI   W G+VDG+AAL+HRKADT  A AFTL RFAGW  RL  WIN P VLE GFK   EE ALHYL CIINHVEEVG
Sbjct:   71 PTARLISEAWNGHVDGVAALKHRKADTMAAAAFTLARFAGWEGRLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVG 152
[Close]
BLAST of mRNA_P-littoralis_Contig1390.2.1 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.550e-29
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 PTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEVG 246
            PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW  RL+ WI+ P VLEAG +  +EE  LHYL CIINHVEEVG
Sbjct:  229 PTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGWEGRLRAWISQPEVLEAGLRDYQEEKELHYLSCIINHVEEVG 310
[Close]
BLAST of mRNA_P-littoralis_Contig1390.2.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 8.460e-25
Identity = 51/80 (63.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 PTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEE 240
            PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W  RLQ WI+ P VLE GFK    + ALHYL CIIN V +
Sbjct:  154 PTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADWPGRLQAWIDHPDVLERGFKMYPTKKALHYLSCIINQVAQ 233
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1390.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KFA5_9PHAE2.310e-3573.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE1.520e-2969.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE6.550e-2967.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR5_9PHAE8.460e-2563.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1390contigP-littoralis_Contig1390:21444..21692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size251
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.0838149-CDS-P-littoralis_Contig1390:21443..216921680789644.0838149-CDS-P-littoralis_Contig1390:21443..21692Pylaiella littoralis U1_48CDSP-littoralis_Contig1390 21444..21692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1390.2.1prot_P-littoralis_Contig1390.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1390 21444..21692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1390.2.1

>prot_P-littoralis_Contig1390.2.1 ID=prot_P-littoralis_Contig1390.2.1|Name=mRNA_P-littoralis_Contig1390.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
PTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWIN
DPSVLEAGFKTAREEIALHYLCCIINHVEEVG*
back to top

mRNA from alignment at P-littoralis_Contig1390:21444..21692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1390.2.1 ID=mRNA_P-littoralis_Contig1390.2.1|Name=mRNA_P-littoralis_Contig1390.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1390:21444..21692+ (Pylaiella littoralis U1_48)
CCTACAACGCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGACGGACT
CGCCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGCGACAGCGTTCA
CCTTGACCCGTTTTGCTGGCTGGGGGGAGAGACTCCAAACCTGGATAAAC
GACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGC
ATTGCACTACCTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1390:21444..21692+

>mRNA_P-littoralis_Contig1390.2.1 ID=mRNA_P-littoralis_Contig1390.2.1|Name=mRNA_P-littoralis_Contig1390.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1390:21444..21692+ (Pylaiella littoralis U1_48)
CCTACAACGCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGACGGACT
CGCCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGCGACAGCGTTCA
CCTTGACCCGTTTTGCTGGCTGGGGGGAGAGACTCCAAACCTGGATAAAC
GACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGC
ATTGCACTACCTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGA
back to top