mRNA_P-littoralis_Contig139.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.15.1
Unique NamemRNA_P-littoralis_Contig139.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig139.15.1 vs. uniprot
Match: A0A6H5KW71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.320e-5
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = 3 
Query:  276 CKHVGCTKSPSYGVAGAKAAEFCSGHAKDGMVDVL 380
            C H GC K P YGVAG K  EFCSGH K GMVDV+
Sbjct:    4 CGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVV 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KW71_9PHAE9.320e-568.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:47597..51103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2870
Hectar predicted targeting categoryother localisation
Exons2
Cds size1758
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.236019-UTR-P-littoralis_Contig139:47596..484451680789640.236019-UTR-P-littoralis_Contig139:47596..48445Pylaiella littoralis U1_48UTRP-littoralis_Contig139 47597..48445 -
1680789640.2742-UTR-P-littoralis_Contig139:50840..511031680789640.2742-UTR-P-littoralis_Contig139:50840..51103Pylaiella littoralis U1_48UTRP-littoralis_Contig139 50841..51103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.2555943-CDS-P-littoralis_Contig139:48445..484811680789640.2555943-CDS-P-littoralis_Contig139:48445..48481Pylaiella littoralis U1_48CDSP-littoralis_Contig139 48446..48481 -
1680789640.265348-CDS-P-littoralis_Contig139:49118..508401680789640.265348-CDS-P-littoralis_Contig139:49118..50840Pylaiella littoralis U1_48CDSP-littoralis_Contig139 49119..50840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.15.1prot_P-littoralis_Contig139.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 48446..50840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.15.1

>prot_P-littoralis_Contig139.15.1 ID=prot_P-littoralis_Contig139.15.1|Name=mRNA_P-littoralis_Contig139.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=586bp
MPRKCKHVGCTKSPSYGVAGAKAAEFCSGHAKDGMVDVLRNKCTHRGCTK
KPSYGVAGTKTADFCSGHAKDGMVDVRHKKCTHRGCTTRPKYGVAGTKTA
EFCSGHAKDGMVDVCCKKCARRGCIKRPSYGVAGTKTAEFCSGHAKDGMV
DVRSKKCTHRGCTNYPSYGVAGTKAAEFCSGHAKDGMVNVGVKKCTHPGC
TTKPCYGVAGTKTAEFCSGHAKDGMVNVVNKRCTHPGCTKQPSYGVAGIK
TAEFCSGHANHGMVNVVGKKCTHHDCTKQPSFGMAGTKTGEFCSGHAKDG
MVDVRSKKCTHPGCNTGRSYGVAGTKTAKFCSWHADDGMVDVYSKKCTHR
GCTKRPSYGVAGTKTAEFCSGHAKDGMVNVVSKKCTYRGCTKKPTYGVAG
GIRTVCARHTETGMVHFSTSKVASGVHNSTCGTRGCRALELDGGTVRRAG
TAGKRKARSPSSTQTETTVGTSRADTKRTRQHPFATIVTPAPINAAEDRC
HPVEDASIQEPDDAAIKTEVAVPSKTDPGELGQMKKLLENGPPPLNILRV
LSQNLWSRRKRGLYSHRKILRPPEVSSIARGTKAD*
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mRNA from alignment at P-littoralis_Contig139:47597..51103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.15.1 ID=mRNA_P-littoralis_Contig139.15.1|Name=mRNA_P-littoralis_Contig139.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3507bp|location=Sequence derived from alignment at P-littoralis_Contig139:47597..51103- (Pylaiella littoralis U1_48)
CAACCATGACATGACATGCACACCTACGCTACCCACCCCGACCCTGACCC
CGACCCTAACCCTAACTCTCACGACCGACCGAGGAGGGCCGAAGCGAGCA
CAACCGCGGCTGCGCCGCGGTCGTGGAACGCTGGTGTTCTGATTTCAGGA
GGGGCGGAGGGGCGGAGGGACGGAGGGACGGAGGGACGGAGGGACGGAGG
GACAGGCGCGCGTTATCAACCCTGGCGTGAGCCTATCCCCAATTTTGCGC
CTATGATAGCAGGATGCCGAGGAAGTGCAAACATGTTGGTTGCACCAAGA
GCCCGAGCTATGGTGTGGCAGGTGCCAAGGCGGCGGAGTTCTGCTCTGGA
CACGCCAAGGACGGGATGGTGGACGTCCTCAGGAATAAGTGCACCCACCG
TGGCTGCACCAAGAAGCCGAGCTATGGCGTGGCAGGTACCAAGACGGCGG
ATTTCTGCTCCGGACACGCCAAGGATGGGATGGTCGACGTCCGCCACAAG
AAGTGCACCCACCGTGGATGCACCACGAGGCCAAAGTATGGCGTGGCAGG
TACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGGTGG
ACGTCTGCTGCAAGAAGTGCGCCCGTCGTGGCTGCATCAAGCGGCCGAGT
TATGGCGTGGCAGGTACCAAGACAGCGGAGTTCTGCTCTGGACACGCCAA
AGATGGGATGGTGGACGTCCGCAGCAAGAAGTGCACTCACCGTGGCTGCA
CCAACTACCCGAGCTATGGCGTGGCAGGTACCAAGGCGGCGGAGTTCTGC
TCTGGACACGCCAAGGACGGGATGGTGAATGTCGGCGTCAAGAAGTGCAC
CCATCCTGGCTGCACCACGAAACCGTGCTATGGTGTGGCAGGTACCAAGA
CAGCGGAGTTCTGCTCCGGCCACGCCAAGGACGGGATGGTAAACGTCGTC
AACAAGAGGTGCACCCACCCTGGCTGCACCAAACAGCCGAGCTATGGCGT
GGCAGGTATCAAGACGGCGGAGTTCTGCTCTGGACACGCCAACCACGGGA
TGGTGAACGTTGTCGGCAAGAAGTGCACCCATCATGACTGCACGAAGCAG
CCCAGCTTTGGCATGGCAGGTACCAAGACGGGGGAGTTCTGCTCTGGACA
CGCCAAGGACGGGATGGTGGACGTCCGCAGCAAGAAGTGCACCCACCCTG
GATGCAACACGGGCCGGAGCTATGGCGTGGCAGGTACCAAGACGGCGAAG
TTCTGCTCCTGGCACGCCGACGACGGGATGGTGGACGTCTACAGCAAGAA
GTGCACCCATCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTGGCAGGTA
CCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGGTGAAC
GTTGTCAGCAAGAAGTGCACCTACCGTGGCTGCACCAAGAAGCCGACCTA
TGGCGTGGCCGGCGGCATTCGAACGGTTTGCGCGCGACACACTGAAACAG
GTATGGTGCACTTTTCTACGTCAAAGGTTGCATCTGGTGTCCACAATAGT
ACGTGCGGCACACGAGGGTGTAGAGCTTTGGAGCTGGATGGGGGCACTGT
CCGCCGTGCCGGTACCGCTGGAAAGAGAAAGGCTCGCTCTCCCTCATCCA
CCCAGACGGAGACAACTGTCGGCACGAGTAGGGCAGACACCAAGCGAACT
CGCCAGCACCCGTTCGCCACAATTGTGACTCCGGCCCCAATCAATGCAGC
TGAAGATCGATGTCATCCAGTTGAAGACGCTTCGATACAGGAGCCAGACG
ACGCTGCGATCAAGACAGAAGTGGCGGTCCCTTCCAAGACGGACCCGGGG
GAGCTTGGCCAGATGAAGAAGTTGCTGGAGAACGGGCCACCCCCGTTGAA
TATTCTTCGTGTGCTGAGCCAGAATCTGTGGTCAAGACGGAAGCGAGGAT
TGTATTCCCATCGAAAAATACTGCGGCCACCAGAGGTGCGTTGTAAAACA
ATCATTACTGCTCTGCGGCAGCTGAGTTCGTACAAGAATGTCACCCCTCT
TCATCCATTTACCTCGCGCCACCTGAAATTTGATTTTCATGTTGAACAAA
ATGAAAAGCGGGCAGTTCGTTGCTTTCACTGTGGTCGCTTTAATTTTGGT
ATAGTGAGTGAAGCTTGTAGAAGATCGACATGCGTGTGTTGCCTAGAAAA
CGCTGGGATGGTGTTTAGAAACGTAAGTACTGTTTGACCGCTTCATTTCA
TGCGGCTTGTTTATTGTCTCCTTCCTGCTTACTGAGAAAGTCAATTTCGA
GTTGTCAATTCAGCGTATTTTCCAAGTATTGTTCTTTTTCTCTTGTTCTT
TTTCTCATGAGATATGTCTCGCGCAACATTTCCAAGGCTGCCTGTTCCTT
ACCGCATCCTTCGGTATTAATGCTGCTTGATACTCTGGCGGTATCGATGG
GCACCATACAAGTACATGCTGCTGGTTTAGAGCCCCACTGTCCACATCTA
TGGTAGTGACGAAATCGACCGCAATACACCGACGGCGATCTGACAGCTAT
ACCCGACGGCCACCGCCGTCACTTGGAGCTCCTGCCAACCGTTTCCGATT
TTTCGTTGCGTTCTTGAAACAGGTGAGCTCAATCGCAAGGGGGACGAAAG
CCGATTGAGAGAGGCGCGGAGGTAGCACGGTTCTCCCCTTGAGGGTGATC
TTCACCGCTACGGGCACCTTTTCTGCTGTGGGCGATGTTTGGCGATCGGC
CGTTCTCCCCTGTTGTCGTGCTAACAACATTCCATACTGAAGCGGTACCA
ACACAGGAATGTGTCAGCCTTCGGCGGTCGCTTGTGGCGCCACCAAACGT
ATCAGCCGAACTATTGCTCCTATTTGAGCGTGCACGAAGGCGCACGACGT
CCGGTACGGCTCAACTACCTCGTTCTGCACCGTTTTCTGTTCCTGTGTAA
AACATTGTCTTTAAGCGCATGTGGTTGAGAAAGCAATCTCATGCTAGTCC
CCTTCCGGTCTCTTTTTTTTTCACCAGTACGGTACGAGCGGTTTGTGCAG
GGGTAGGTTTGATGAAAATGTCTTTCCCACCCCCTGTCTATGTCGTTGGC
ATACTAGGATTGGAAAGCACATTTTTGAAACGTGGTTATCCATATGAATA
TATGCACATGTGACTGTTTTTGGAGTGAAAGCTAGTTGTGGTTTTGGCCG
AGACAAGTCTACGTAGACTCACACGCCCACCGAGTTGTTTTTGCTGTCGA
CCGAAGTACAGGGGAAGAGGCAGGCCAAGTACGAAACATACCCGATTGAC
TGGTTGAGGATGGGTGGGCATCTTGAGACAGTACGTCGGGCTGTTTTGGG
CGACTGGCTGATCCCCTTGTGTCATCATCTATTTGGTTTTTGCCTTGTCC
TTGACTGTCTTGTTTTCGTTTATTCTGGTGTGCCCGCATGGAGTAGGGAA
TAATCTTTGGTTCACATGCCGTTGATGGTTAACTATTGCAAGTTTTATGT
CTTACCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:47597..51103-

>mRNA_P-littoralis_Contig139.15.1 ID=mRNA_P-littoralis_Contig139.15.1|Name=mRNA_P-littoralis_Contig139.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1758bp|location=Sequence derived from alignment at P-littoralis_Contig139:47597..51103- (Pylaiella littoralis U1_48)
ATGCCGAGGAAGTGCAAACATGTTGGTTGCACCAAGAGCCCGAGCTATGG
TGTGGCAGGTGCCAAGGCGGCGGAGTTCTGCTCTGGACACGCCAAGGACG
GGATGGTGGACGTCCTCAGGAATAAGTGCACCCACCGTGGCTGCACCAAG
AAGCCGAGCTATGGCGTGGCAGGTACCAAGACGGCGGATTTCTGCTCCGG
ACACGCCAAGGATGGGATGGTCGACGTCCGCCACAAGAAGTGCACCCACC
GTGGATGCACCACGAGGCCAAAGTATGGCGTGGCAGGTACCAAGACGGCG
GAGTTCTGCTCTGGACACGCCAAGGACGGGATGGTGGACGTCTGCTGCAA
GAAGTGCGCCCGTCGTGGCTGCATCAAGCGGCCGAGTTATGGCGTGGCAG
GTACCAAGACAGCGGAGTTCTGCTCTGGACACGCCAAAGATGGGATGGTG
GACGTCCGCAGCAAGAAGTGCACTCACCGTGGCTGCACCAACTACCCGAG
CTATGGCGTGGCAGGTACCAAGGCGGCGGAGTTCTGCTCTGGACACGCCA
AGGACGGGATGGTGAATGTCGGCGTCAAGAAGTGCACCCATCCTGGCTGC
ACCACGAAACCGTGCTATGGTGTGGCAGGTACCAAGACAGCGGAGTTCTG
CTCCGGCCACGCCAAGGACGGGATGGTAAACGTCGTCAACAAGAGGTGCA
CCCACCCTGGCTGCACCAAACAGCCGAGCTATGGCGTGGCAGGTATCAAG
ACGGCGGAGTTCTGCTCTGGACACGCCAACCACGGGATGGTGAACGTTGT
CGGCAAGAAGTGCACCCATCATGACTGCACGAAGCAGCCCAGCTTTGGCA
TGGCAGGTACCAAGACGGGGGAGTTCTGCTCTGGACACGCCAAGGACGGG
ATGGTGGACGTCCGCAGCAAGAAGTGCACCCACCCTGGATGCAACACGGG
CCGGAGCTATGGCGTGGCAGGTACCAAGACGGCGAAGTTCTGCTCCTGGC
ACGCCGACGACGGGATGGTGGACGTCTACAGCAAGAAGTGCACCCATCGT
GGCTGCACCAAGCGGCCGAGCTATGGCGTGGCAGGTACCAAGACGGCGGA
GTTCTGCTCTGGACACGCCAAGGACGGGATGGTGAACGTTGTCAGCAAGA
AGTGCACCTACCGTGGCTGCACCAAGAAGCCGACCTATGGCGTGGCCGGC
GGCATTCGAACGGTTTGCGCGCGACACACTGAAACAGGTATGGTGCACTT
TTCTACGTCAAAGGTTGCATCTGGTGTCCACAATAGTACGTGCGGCACAC
GAGGGTGTAGAGCTTTGGAGCTGGATGGGGGCACTGTCCGCCGTGCCGGT
ACCGCTGGAAAGAGAAAGGCTCGCTCTCCCTCATCCACCCAGACGGAGAC
AACTGTCGGCACGAGTAGGGCAGACACCAAGCGAACTCGCCAGCACCCGT
TCGCCACAATTGTGACTCCGGCCCCAATCAATGCAGCTGAAGATCGATGT
CATCCAGTTGAAGACGCTTCGATACAGGAGCCAGACGACGCTGCGATCAA
GACAGAAGTGGCGGTCCCTTCCAAGACGGACCCGGGGGAGCTTGGCCAGA
TGAAGAAGTTGCTGGAGAACGGGCCACCCCCGTTGAATATTCTTCGTGTG
CTGAGCCAGAATCTGTGGTCAAGACGGAAGCGAGGATTGTATTCCCATCG
AAAAATACTGCGGCCACCAGAGGTGAGCTCAATCGCAAGGGGGACGAAAG
CCGATTGA
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