mRNA_P-littoralis_Contig1386.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1386.8.1
Unique NamemRNA_P-littoralis_Contig1386.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: A0A6H5K995_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.920e-16
Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 ATSLDPEDQYPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTC--KGDGVDSRAICLDGHYECLDTSASCFGAPTPAPTP 255
            +TS+D  D YPDCE E  +   GDGYCD AT N EECGFDGGDCCEC C    D  + +       + C DTS++C+  P P PTP
Sbjct:   32 STSVDLIDLYPDCEGE--LDHIGDGYCDDATNNLEECGFDGGDCCECDCVVPADASEDQLAYSCVQFSCDDTSSACYVVPAPTPTP 115
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: D7G9A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.530e-15
Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   25 DQYPDCEEE-DIILFFGDGYCDSATLNTEECGFDGGDCCECTC--KGDGVDSRAICLDGHYECLDTSASCFGAPTPAPTP 255
            D YPDCE E D+I   GDGYCD AT N EECGFDGGDCCEC C    D  + +       + C DTS++C+  P P PTP
Sbjct:    3 DLYPDCEGELDLI---GDGYCDDATNNLEECGFDGGDCCECDCVIPADASEDQLAYSCVQFSCDDTSSACYVVPAPTPTP 79
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 9.310e-7
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:   70 GDGYCDSATLNTEECGFDGGDCCECTCKGDGVDSRAICLDGHYECLDTSASCFGAPT 240
            GDG+CDS   N E CG+DGGDCC CTC+    D      D  ++C D SA+CFG  T
Sbjct:   62 GDGWCDSNN-NKEACGYDGGDCCSCTCESVWDDDYTCGEDAFFDCKDPSAACFGEET 117
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.340e-6
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   31 YPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTCKGDGVDSRAICLDGHYECLDT---SASCFGAPTPAPTPG 258
            YPDCEE   +  + DG CD   LNT  CG+DGGDCC CTC+       + C    Y+C+D    SA    +PTP+P  G
Sbjct:  142 YPDCEE--YLYEWQDGVCDD-NLNTAACGYDGGDCCRCTCRDYSSWGYSTCGYYGYDCMDPDAPSACSTDSPTPSPAAG 217
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.340e-6
Identity = 37/81 (45.68%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:   19 PEDQYPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTCKGDGVDSRAICLDGH--YECLDTSA--SCFGAPTPAP 249
            P   YPDCE +  ++  GD  CD    N  ECGFDGGDCCECTC   G     +C +G   Y C+D  A   C  AP+P P
Sbjct:   57 PAALYPDCEADTALV--GDSICD-LDFNVAECGFDGGDCCECTCVDTG---DQVCGEGGGGYFCVDPDAPQDCASAPSPTP 131
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.430e-6
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   19 PEDQYPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTCKGDGVDSRAICLDGH--YECLDTSASCFGAPTPAPTP 255
            P   YPDCE +  ++  GD  CD   +N  ECGFDGGDCCECTC   G     +C +G   Y C+D  A    A +P+PTP
Sbjct:   55 PTALYPDCEADMALV--GDSLCDF-DVNVAECGFDGGDCCECTCVDTG---DQVCGEGGTGYFCVDPDAPQDCASSPSPTP 129
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: D7FI78_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI78_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.290e-6
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   25 DQYPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTCKGDGVDSRAICLDGH--YECLDTSASCFGAPT 240
            D   +CE+   I   GDGYC+   ++T ECG+DGG+CC CTC+    D    C  G+   +C D SASCFG  T
Sbjct:   26 DMLENCEDAADI---GDGYCNE-DVDTPECGYDGGNCCSCTCQSAPGDDIFSCRGGYRSIDCQDPSASCFGEGT 95
[Close]
BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.280e-6
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   31 YPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTCKG-DGVDSRAICLDGHYECLDTSA--SCF-GAPTPAPTPG 258
            YPDCEE   +  + DG CD   LNT ECG+DGGDCC CTC+  +       C    Y+C+D  A  SC   +PTP+P  G
Sbjct:  142 YPDCEE--YLYEWQDGVCDD-NLNTAECGYDGGDCCRCTCRDYNSWGYYTNCGYYGYDCMDPDAPSSCSTDSPTPSPAAG 218
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BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 5.410e-6
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    1 AATSLDPEDQYPDCEEE-DIILFFGDGYCDSATLNTEECGFDGGDCCECTCKGDGVDSRAICLD-GHYECLDTSASCFGAPT 240
            +A  +D +D   D  E    +   G+G+CD    N EECG+DGGDCC CTC+    D  +   + G+++C D +ASCFG  T
Sbjct:    9 SAPCVDDDDVTVDMVENCGYVSGIGNGWCDRNN-NKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPTASCFGEGT 89
[Close]
BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 6.300e-6
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   25 DQYPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTCKGDGVDSRA----ICLDGH----YECLDTSASCFG 231
            +QY  C     +   GDG CD    N EECGFDGGDCC+CTC    V S A     C + +    ++CLDTSASC+G
Sbjct:  302 EQYEHCG---WVTRIGDGMCDDEN-NKEECGFDGGDCCDCTCV---VPSSAWSDYACQEVYNINSFDCLDTSASCYG 371
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1386.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K995_9PHAE2.920e-1651.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9A3_ECTSI2.530e-1553.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI9.310e-750.88LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J6K0_9PHAE1.340e-644.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE1.340e-645.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX76_ECTSI1.430e-645.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI78_ECTSI3.290e-644.59LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FX77_ECTSI5.280e-646.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI88_ECTSI5.410e-640.24Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
D8LEP6_ECTSI6.300e-646.75Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1386contigP-littoralis_Contig1386:18933..22585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FX76
PFAMsNotch
Model size2263
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.58e-09
EggNOG OGs2E9KF@1|root,2SFXU@2759|Eukaryota
Ec32 ortholog descriptionNotch domain
Ec32 orthologEc-03_004250.1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.9809084-CDS-P-littoralis_Contig1386:18932..190591680789639.9809084-CDS-P-littoralis_Contig1386:18932..19059Pylaiella littoralis U1_48CDSP-littoralis_Contig1386 18933..19059 +
1680789639.9931397-CDS-P-littoralis_Contig1386:20450..207281680789639.9931397-CDS-P-littoralis_Contig1386:20450..20728Pylaiella littoralis U1_48CDSP-littoralis_Contig1386 20451..20728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.0018122-UTR-P-littoralis_Contig1386:20728..225851680789640.0018122-UTR-P-littoralis_Contig1386:20728..22585Pylaiella littoralis U1_48UTRP-littoralis_Contig1386 20729..22585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1386.8.1prot_P-littoralis_Contig1386.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1386 18933..20728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1386.8.1

>prot_P-littoralis_Contig1386.8.1 ID=prot_P-littoralis_Contig1386.8.1|Name=mRNA_P-littoralis_Contig1386.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
AATSLDPEDQYPDCEEEDIILFFGDGYCDSATLNTEECGFDGGDCCECTC
KGDGVDSRAICLDGHYECLDTSASCFGAPTPAPTPGVDPPTEGDDAIVTE
DSSVSLSRATSATVAATSAFVATALGGVVAGMLG*
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mRNA from alignment at P-littoralis_Contig1386:18933..22585+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1386.8.1 ID=mRNA_P-littoralis_Contig1386.8.1|Name=mRNA_P-littoralis_Contig1386.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3653bp|location=Sequence derived from alignment at P-littoralis_Contig1386:18933..22585+ (Pylaiella littoralis U1_48)
GCGGCCACTTCTTTGGACCCGGAGGACCAGTACCCTGACTGTGAGGAAGA
GGACATTATTTTGTTTTTCGGGGATGGCTACTGCGACAGCGCAACGCTTA
ACACGGAGGAGTGCGGCTTCGACGGCGGTGAGTTCCCCTACGCCTCGCCA
CCTGTGGGAGAGGGAGGTTCGTACCGCCCCCCGCTCGCTAGTCTGTGATG
GCACTTTTACGACCTACCCACCGCCGTACTTACATGCCCCGCTAGCCTGA
AAATGACATGTTTAGCCATTTAATGTGCTCTGTCCAATTCAATTAATTCT
TGTCGGGGGAACCCTGACAGACAAGATAGACAGACAGACAGGCGTGATTG
TGCTCCCGGCTTTCTTTGGGTGTTAGGCGCTACGCAATCCCGTACGTATG
TCGCATCAGATACAAATACAGAAACCACGAGGCCCCCTTGACTGATTTTC
AGAGCTCCATCGGTGCTTTCCTGATCGAAAAGAGTGTTCGTGTCGCAAAG
AATGATTGACCAGCGTTGTAAACATCCCGCTGAACACTACGGCTTTCCGG
ACACGTGAACATCATGAGGTAGTGGCTCATCATCCATTTACTTCGCTGTG
GAGTACCGTGATCGAGAATTGAAAATCGGCCCAGCGGGCCCCACGGTACA
GTGTCTATATCGTATGCGACCTACGGTATTCCGCTGTCGGCATGGATGTC
ACAGGGGCGGCAAGAAGTCAACGGCTGTGTTCGAGAGACGGCGAAAGCGG
GAATTGTAAAATAAATGCACGGGTTCACGTGTAATTTCCGTCTCGCCGTA
GTTTGAACTTTGGAGGTTTGTGAAGACCCGTGCTGGATGCCAACCAGTCG
ATTGACTTACATAATGGTTCGGTCAGCCGCGGTGAGCTGCATGGTGGCGC
GTTCAATTTTGTGGAAACATTTTCATACCTCCGCGATAGTGGCCAAGCTT
GTAGGAGACTCGAGGACGGAGGGGTAAGGCGTCTCATTGTTGAGCTCCCC
ACCTGCTTCAAATTTTTATCAGGATTAAGGCGCATTCGAGTAGAGGTCCA
AACGGACTATGTATCATATCTACTGCTGTATATCGGCACTTTCGTAGTAT
TTCCGTTCATCGAGGTGACAATTCCTTCGTATTGTTTTTTGACGTTCACA
AACGGGGAGAGGGCGCACTTCTATCTCACGAGTACGCATACCACGCCCAT
CTTGTCTCTAGAAGGGTTCCACAGACATAATGGAATGCAGGGAATGTTGA
GTAGAGAACCCTTTCGAGGAAAAAAACGCTGCCGAGACAGTTCTTACGCG
AATATAAGTCGCTCCGTCATTTGAGGTGTGACATTGTCTGTTTTTGTCGA
AATAACAAGAACGTTATGCTGGTTTACCTTCATTTCGCACCACAGAGCTG
CCAAAGAAAATTAGTTTTGCTCTGCCATGCACGAGTTCGTTTCCGTCCCT
CACTTTCACCACAACCGTGTTTGGCTTCCTGACCAAACCAACCTCCAATC
GTCCCACGACTTTTGCAGGAGATTGCTGTGAGTGCACCTGTAAAGGCGAC
GGTGTCGATTCGCGCGCGATCTGCCTTGATGGTCATTACGAATGCTTAGA
CACATCGGCCTCGTGCTTCGGGGCGCCCACCCCAGCGCCCACGCCGGGAG
TGGACCCTCCGACCGAAGGGGATGATGCCATCGTGACGGAAGACAGTTCG
GTTTCTCTTTCTAGAGCGACATCGGCCACCGTCGCTGCCACCAGCGCCTT
TGTCGCGACTGCCCTCGGCGGTGTCGTCGCAGGGATGCTCGGATAGTGTG
GCAAGCCGTGTTGGTTTTCGTTCCTGGCGGTCGAGCGATTCCTTACCGTT
GGGTGTTGCTGGATGGCGGGGAGGAGGAGGCATGAGTGTTAATGGCGTCT
TTTTTCTTTCTCCTCCAGAACTATTCGCGGCAACTCTGTCGAGTTCGGCC
GCGTTTGTTATGTGGCTGCTTCTGCTGCTGCTGCTGCTTCGCGTGAATGA
TTATTCACCAAAGAGACGAAGGAGGCAGAATCTGACCTTCTGTTTTTGGG
CACAGGTGATCGGCTACGATCGTTGTTGATTGTTTTTTTGGTGTCCTCGC
GAGCGTTCCTGGCGGCAGCCGCGCATTTGGCGAGGATTTCCATCTGTGCG
ACCTTTGCGGTCGTGCGTGATTATCGGAGTAGGATCCGATGGGTTGTTTT
TTTGCCTTGGTAAAACCAACAACCAGGTAGGAATCGGCGCGCCCGTTGTG
CGATTTCCTTGTACTTAAAAAAAGTAGTGACGCTACACGCACATTGGCCG
CGGTGTCCAAGTTATGTGTCTCTTTCGTATCAACTCTGTATCGTGTTTGA
TTGCAGAAGAGTGTCAACTTTTTCTGCATTTTGTTTTACTCACGGCTTGC
ATCAATCAGCACAGTATACGCGAGAGTAAAAGTCGGGGAGCTGCCTGCTG
TGATGGGTATTTCGATTGTTCTGTCGCCGCTTGTGTGATGCAGAAGAGCG
TGAGAGAAGTAAGTTTCGGGCTTACGGGTGGAAGGAGAATGCGGGGTTGA
GCTGACATTGGAGCTACTCATCTTTTCGAAGGCTTGAAATTATATATTAC
GTCATTCTGGGTGAGCAAGACTCCACGTTAGTTCGAGTGGCTTGATCACT
GTTGTATACTTTGCGGGGAAGGGGGTGGAAAATATGTGAACCTTTCTTGT
GATAATTTTTCAGATGCTCTCATGGCCGAACCTTTGGACCAAACAATCCA
TCACACTATCTCATTGGTGAGAGACTCACCGTAGTCCGTGGGGGTGAACA
TTGCCGCCCCCTTTGCGCGGCCGAACACACCACGAATTTTAGTCGCCGTT
GTTGGGTTGTTCTAGCGGGATCAAGAGATTTTTTCCCATTTCGACAATAC
ATACCAGCTTTTTTCCTTATTGAAGAAGGTGTACTGCTGTAACGTAAGGT
AGAATGTTTAATTTGTATGAGTGAATGTCGCTGGATGGAGTAAGTTCCGT
GTCTGCGTTGATCCATCACGTGGGGCACACATAACGTGCGTTTTGTGTGA
TTCCATGATGGGGATTGTTTGTTTCGGTTATTTGGGGGAGGGACGTGCGC
ATGGTAGTCGCACTGCATTTTCGGTGGGGGCGGGAACGCGTAATCGTGCG
TCCGCACTCTTACCCAACACTCGGTGGTTACGGATTACTGGGGGTATTGG
TACTTCGAGACGGGTTGGAGTTCCGAAAGTTTTACTTCGTACTTATTTTT
TGAGGTATCGCCGCAGACAGATGCTAAATGTTGTGCCCAGATATAAAATG
TTTTTCTCGAAGGTTTTTTGCCGAAAATTTTGCTTCTGGTTCTCAGCATT
CTTGTCTCACTCCCGTTGGCTGTGGTACTGATGCACGAAAAATATGCATC
AAATGTTCACTGTTTGTTGCTTTGTGTCTCCTTGCTGTCGTGACGCTCGG
GCTGAACAGTCGCGTACACCTAACGTCCAGCATCAAGCTGTGGGCAAGGG
GATGGACGTACAACCAGCATGCACCCACCCAGCTGCTTGCCTGATGCACC
CACCCAGCTGCTTGCCTGGTGGATGTTGTCGCAAGTCAACCCTGCAAGGT
GGATGCTGTAACACGCCTGGCTGGCTGGTCTCAGATTTTGCCGCACCCTC
TAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1386:18933..22585+

>mRNA_P-littoralis_Contig1386.8.1 ID=mRNA_P-littoralis_Contig1386.8.1|Name=mRNA_P-littoralis_Contig1386.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig1386:18933..22585+ (Pylaiella littoralis U1_48)
GCGGCCACTTCTTTGGACCCGGAGGACCAGTACCCTGACTGTGAGGAAGA
GGACATTATTTTGTTTTTCGGGGATGGCTACTGCGACAGCGCAACGCTTA
ACACGGAGGAGTGCGGCTTCGACGGCGGAGATTGCTGTGAGTGCACCTGT
AAAGGCGACGGTGTCGATTCGCGCGCGATCTGCCTTGATGGTCATTACGA
ATGCTTAGACACATCGGCCTCGTGCTTCGGGGCGCCCACCCCAGCGCCCA
CGCCGGGAGTGGACCCTCCGACCGAAGGGGATGATGCCATCGTGACGGAA
GACAGTTCGGTTTCTCTTTCTAGAGCGACATCGGCCACCGTCGCTGCCAC
CAGCGCCTTTGTCGCGACTGCCCTCGGCGGTGTCGTCGCAGGGATGCTCG
GATAG
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