mRNA_P-littoralis_Contig1385.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1385.3.1
Unique NamemRNA_P-littoralis_Contig1385.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1385.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1385contigP-littoralis_Contig1385:17276..18573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.8738096-CDS-P-littoralis_Contig1385:17275..174701680789639.8738096-CDS-P-littoralis_Contig1385:17275..17470Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 17276..17470 +
1680789639.8837936-CDS-P-littoralis_Contig1385:18121..181941680789639.8837936-CDS-P-littoralis_Contig1385:18121..18194Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 18122..18194 +
1680789639.894017-CDS-P-littoralis_Contig1385:18451..185731680789639.894017-CDS-P-littoralis_Contig1385:18451..18573Pylaiella littoralis U1_48CDSP-littoralis_Contig1385 18452..18573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1385.3.1prot_P-littoralis_Contig1385.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1385 17276..18573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1385.3.1

>prot_P-littoralis_Contig1385.3.1 ID=prot_P-littoralis_Contig1385.3.1|Name=mRNA_P-littoralis_Contig1385.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
SSYATWATTPRIPQAGWRRQEQRRAWQAEERGCAGRDERRDGVDGETGRT
SESEHHLRAWQPCRRDADCGREPRRPHNVREIRVSFSTPDSERGRPRHLP
GSPLRVFFLSGRHQQLPFCLPRLLLGVPKD
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mRNA from alignment at P-littoralis_Contig1385:17276..18573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1385.3.1 ID=mRNA_P-littoralis_Contig1385.3.1|Name=mRNA_P-littoralis_Contig1385.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1298bp|location=Sequence derived from alignment at P-littoralis_Contig1385:17276..18573+ (Pylaiella littoralis U1_48)
AGTTCCTACGCAACGTGGGCAACAACTCCTCGAATCCCCCAGGCAGGGTG
GCGGCGGCAGGAGCAGAGGCGGGCGTGGCAAGCGGAGGAGCGGGGGTGCG
CAGGGCGAGACGAGCGACGGGACGGGGTCGATGGGGAAACCGGAAGGACA
AGTGAATCAGAACATCACCTGCGAGCATGGCAACCTTGTCGGCGGGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGCGTTTGTGTGTGTGTTTGTGTGTGTGTATGTCTGTG
TCTTTGTGTCTCAGTGTCTGTGCCTGTGCCTGTCTGTGTGCGTGCGTGTG
TCTGTGCGTGTGTCTGTGTCTGTGTCTGTATCTGTGTCTTGTGTAAGCCT
GGCCGTTTTACATGCCGCCACATGTGTAGATATGAATAAAGTGACGCGTT
CCCGATGCTTGTACGAAGCAGGCGTTACGCATACATCATGGTGCTTTTTT
CTTGTCGTCTGTCTCGTCCTCCTCTTCTTGTGTTCACCTTCGGCCTCGGC
TGTTTTTTTGACAAGTCTAGCCCCTGCTTTTTGATACGTAGTACTCCGTA
CGAAGTAATCTTCTGTCGTCTTGATGGCGCTCACTGTACGAGATCGGCCT
ACATGAATGTGCTTCGCACTATTTAGTACGAAGTAGTAAGACACGCTTGT
GTGTGTTATTTCCCCTCTTTTGTATTCGTTTGCCCCTTCTCCCCTCTCTC
TTTTTTTTTACTTATCTCCCCTCCCCTCTCTCGCTGTCGACCCCCCTCTC
TGTGTTTTCTTCTGTTTTCATTTTGGTTCAAAACGATTGACGACAGGATG
CTGATTGCGGGCGGGAACCCCGTAGGCCGCACAATGTTCGAGAAATACGC
GTCTCTTTCAGCACACCAGGTACGAATAAAAAAGTGTTGCAGGTGTGGGC
GACGTGATTTCTCTACGAAGGGAGAGCGCAACTGTCACGCACATGAAAAC
TCATATCTCATGCGAAGTTCGTCCACTACAGTTGTACTGCGTCAACACTC
GAAGTACAGTCTACGTGGGGTATTCTTTTGTCGGATCCGGTTTTGGGTGT
CTCGAACATCAGGCAAACGACATGTTTCTCTTCTGTGGTAATCCAATGTG
TTCGCTTCCTCGGCTTTCGCTCACAGACAGCGAACGTGGACGTCCACGGC
ACCTTCCGGGAAGTCCTTTGCGAGTATTTTTCTTGAGCGGCCGTCATCAA
CAGCTGCCATTTTGTCTTCCGCGGTTGCTTCTTGGGGTTCCCAAAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1385:17276..18573+

>mRNA_P-littoralis_Contig1385.3.1 ID=mRNA_P-littoralis_Contig1385.3.1|Name=mRNA_P-littoralis_Contig1385.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1385:17276..18573+ (Pylaiella littoralis U1_48)
AGTTCCTACGCAACGTGGGCAACAACTCCTCGAATCCCCCAGGCAGGGTG
GCGGCGGCAGGAGCAGAGGCGGGCGTGGCAAGCGGAGGAGCGGGGGTGCG
CAGGGCGAGACGAGCGACGGGACGGGGTCGATGGGGAAACCGGAAGGACA
AGTGAATCAGAACATCACCTGCGAGCATGGCAACCTTGTCGGCGGGATGC
TGATTGCGGGCGGGAACCCCGTAGGCCGCACAATGTTCGAGAAATACGCG
TCTCTTTCAGCACACCAGACAGCGAACGTGGACGTCCACGGCACCTTCCG
GGAAGTCCTTTGCGAGTATTTTTCTTGAGCGGCCGTCATCAACAGCTGCC
ATTTTGTCTTCCGCGGTTGCTTCTTGGGGTTCCCAAAGAT
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