mRNA_P-littoralis_Contig1384.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1384.9.1
Unique NamemRNA_P-littoralis_Contig1384.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A2D8LL73_9FLAO (PHB domain-containing protein n=5 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A2D8LL73_9FLAO)

HSP 1 Score: 288 bits (737), Expect = 3.620e-95
Identity = 149/163 (91.41%), Postives = 151/163 (92.64%), Query Frame = 1
Query:  139 LAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            L P F +  P    VLLLFGKYIGTIKKNGLYWVNPFY+KQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEER   IAGIEVLESRIGYLAYANE
Sbjct:   48 LLPGFVLVNPNGSRVLLLFGKYIGTIKKNGLYWVNPFYTKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEER-LAIAGIEVLESRIGYLAYANE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A167KA90_9FLAO (PHB domain-containing protein n=1 Tax=Cochleicola gelatinilyticus TaxID=1763537 RepID=A0A167KA90_9FLAO)

HSP 1 Score: 277 bits (708), Expect = 9.140e-91
Identity = 141/164 (85.98%), Postives = 150/164 (91.46%), Query Frame = 1
Query:  136 ILAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            ++ P F +  P    VLLLFGKYIGTI+KNGL+WVNPF++K KISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEG DEDITLRSSMAEVNEALE+ELEER   IAGIEVLESRIGYLAY+NE
Sbjct:   47 VMLPGFVLVNPNGSRVLLLFGKYIGTIRKNGLFWVNPFFTKTKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGLDEDITLRSSMAEVNEALEKELEER-LAIAGIEVLESRIGYLAYSNE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A1G7IW11_9FLAO (SPFH domain / Band 7 family protein n=1 Tax=Ulvibacter litoralis TaxID=227084 RepID=A0A1G7IW11_9FLAO)

HSP 1 Score: 273 bits (697), Expect = 4.410e-89
Identity = 140/168 (83.33%), Postives = 149/168 (88.69%), Query Frame = 1
Query:  124 IRITILAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            + I I+ P F +  P    VLLLFGKYIGTIK NGLYWVNP + K+KISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVD+YENFVRIQTDAAVRELASKYPYDNFADEG DEDITLRSSM EVNEALE+ELE+R   IAGIEVLESRIGYLAY+NE
Sbjct:   44 LTIIIMIPGFVLVNPNGSRVLLLFGKYIGTIKSNGLYWVNPLFVKKKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDDYENFVRIQTDAAVRELASKYPYDNFADEGLDEDITLRSSMTEVNEALEKELEDR-LAIAGIEVLESRIGYLAYSNE 210          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A5J4J3A2_9FLAO (PHB domain-containing protein n=1 Tax=Patiriisocius marinus TaxID=1397112 RepID=A0A5J4J3A2_9FLAO)

HSP 1 Score: 271 bits (692), Expect = 2.450e-88
Identity = 141/177 (79.66%), Postives = 152/177 (85.88%), Query Frame = 1
Query:   97 KDAMVWCTDIRITILAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            K+ + +   I   IL P F +  P    VLLLFG+YIGTIKKNGL+WVNP Y K KISLRARNFDSERLKVNDK+GNPIIISTILVWRV DTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEG DEDITLRSSM+EVN ALE+EL+ER  +IAGIEVLESRIGYLAYANE
Sbjct:   34 KNPLPFLGTIIGLILLPGFVLVNPNGSRVLLLFGEYIGTIKKNGLFWVNPLYKKSKISLRARNFDSERLKVNDKMGNPIIISTILVWRVSDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGLDEDITLRSSMSEVNVALEKELDER-LSIAGIEVLESRIGYLAYANE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A3L9YCV0_9FLAO (SPFH domain/Band 7 family protein n=1 Tax=Ulvibacter antarcticus TaxID=442714 RepID=A0A3L9YCV0_9FLAO)

HSP 1 Score: 270 bits (689), Expect = 6.980e-88
Identity = 138/164 (84.15%), Postives = 147/164 (89.63%), Query Frame = 1
Query:  136 ILAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            +L P F +  P    VLLLFGKYIGTI+ NGL+WVNP Y K+KISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVR+LASKYPYDNFADEG DE+ITLRSSM EVNEALE+ELEER   IAGIEVLESRIGYLAY+NE
Sbjct:   47 MLIPGFVLVNPNGSRVLLLFGKYIGTIRNNGLFWVNPLYVKKKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRQLASKYPYDNFADEGLDEEITLRSSMTEVNEALEKELEER-LAIAGIEVLESRIGYLAYSNE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A5J4G024_9FLAO (PHB domain-containing protein n=1 Tax=Patiriisocius marinistellae TaxID=2494560 RepID=A0A5J4G024_9FLAO)

HSP 1 Score: 269 bits (688), Expect = 9.900e-88
Identity = 138/164 (84.15%), Postives = 146/164 (89.02%), Query Frame = 1
Query:  136 ILAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            I+ P F +  P    VLLLFG+Y GTI+KNGLYWVNP Y+K K+SLRARNFDSERLKVNDK+GNPIIISTILVWRV DTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEG DEDITLRSSM EVNEALE+ELEER   IAGIEVLESRIGYLAYANE
Sbjct:   47 IMLPGFIMVNPNGSRVLLLFGEYKGTIRKNGLYWVNPLYTKTKMSLRARNFDSERLKVNDKMGNPIIISTILVWRVNDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGLDEDITLRSSMGEVNEALEKELEER-LAIAGIEVLESRIGYLAYANE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: UPI00193A4AB6 (SPFH domain-containing protein n=1 Tax=Luteirhabdus pelagi TaxID=2792783 RepID=UPI00193A4AB6)

HSP 1 Score: 266 bits (681), Expect = 1.140e-86
Identity = 135/163 (82.82%), Postives = 146/163 (89.57%), Query Frame = 1
Query:  139 LAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            L P F +  P    VLLLFG+Y GT+KKNGL+WVNPFY+K+KISLRARNFDSERLKVNDKLGNP+IISTILVWRVRDT+KAAFDVDNYENFVR+QTDAAVRELASKYPYDNFADEG DEDITLRSSM EVNEALE  L+ER   IAG+EVLESRIGYLAYANE
Sbjct:   48 LLPGFILVNPNGSRVLLLFGEYKGTVKKNGLFWVNPFYAKKKISLRARNFDSERLKVNDKLGNPVIISTILVWRVRDTYKAAFDVDNYENFVRVQTDAAVRELASKYPYDNFADEGMDEDITLRSSMDEVNEALEMGLQER-LAIAGVEVLESRIGYLAYANE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A2S7KQ99_9FLAO (PHB domain-containing protein n=1 Tax=Aureitalea marina TaxID=930804 RepID=A0A2S7KQ99_9FLAO)

HSP 1 Score: 262 bits (669), Expect = 7.540e-85
Identity = 135/163 (82.82%), Postives = 144/163 (88.34%), Query Frame = 1
Query:  139 LAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            + P F +  P    VLLLFGKY+GTIKKNGL+WVNP Y K+KISLRARNFDSERLKVNDKLGNPI ISTILVWRVRDT KAAFDVD+YENFVR+QTDAAVRELASKYPYDNFADEG DE+ITLRSSM EVNEALE ELE+R   IAGIEVLESRIGYLAYANE
Sbjct:   48 MLPGFVLVNPNGSRVLLLFGKYMGTIKKNGLFWVNPLYVKKKISLRARNFDSERLKVNDKLGNPINISTILVWRVRDTFKAAFDVDDYENFVRVQTDAAVRELASKYPYDNFADEGMDEEITLRSSMKEVNEALEAELEDR-LAIAGIEVLESRIGYLAYANE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A2U0I5G3_9FLAO (PHB domain-containing protein n=4 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A2U0I5G3_9FLAO)

HSP 1 Score: 260 bits (665), Expect = 3.050e-84
Identity = 135/161 (83.85%), Postives = 142/161 (88.20%), Query Frame = 1
Query:  145 PRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            P F +  P    VLLLFGKY+GTIKKNGL+WVNP Y K+KISLRARNFDSERLKVNDKLGNP+IISTILVWRVRDT KAAFDVDNYE FVRIQTDAAVRELASKYPYDNFADEG D DITLRSSM EVNEAL + L+ER  TIAGIEVLESRIGYLAYANE
Sbjct:   50 PGFVLVNPNGSRVLLLFGKYMGTIKKNGLFWVNPLYVKKKISLRARNFDSERLKVNDKLGNPVIISTILVWRVRDTFKAAFDVDNYEEFVRIQTDAAVRELASKYPYDNFADEGMDADITLRSSMKEVNEALVKGLDER-LTIAGIEVLESRIGYLAYANE 209          
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Match: A0A0P0D136_9FLAO (PHB domain-containing protein n=3 Tax=Flavobacteriales TaxID=200644 RepID=A0A0P0D136_9FLAO)

HSP 1 Score: 259 bits (663), Expect = 6.130e-84
Identity = 131/179 (73.18%), Postives = 155/179 (86.59%), Query Frame = 1
Query:   91 YHKDAMVWCTDIRITILAPRFCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSERLKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELASKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESRIGYLAYANE 627
            Y ++AM     + + I+ P F + +P    VLLLFGKYIGTIKKNGLYWVNPFY+K+KISLRA NFDSERLKVNDK+GNPI+ISTILVWRV++T+KAAFDVDN+ENFVR+QTDAAVR+LAS YPYDNFADEG DEDITLRSS+ EV+E LE+E++ER  +IAGIEVLE+RIGYLAYA E
Sbjct:   32 YKENAMFALLLVAVFIILPGFIMVQPNNSRVLLLFGKYIGTIKKNGLYWVNPFYTKKKISLRASNFDSERLKVNDKMGNPIMISTILVWRVKNTYKAAFDVDNFENFVRVQTDAAVRKLASMYPYDNFADEGLDEDITLRSSVNEVSETLEKEIDER-LSIAGIEVLEARIGYLAYAQE 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1384.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LL73_9FLAO3.620e-9591.41PHB domain-containing protein n=5 Tax=Flavobacteri... [more]
A0A167KA90_9FLAO9.140e-9185.98PHB domain-containing protein n=1 Tax=Cochleicola ... [more]
A0A1G7IW11_9FLAO4.410e-8983.33SPFH domain / Band 7 family protein n=1 Tax=Ulviba... [more]
A0A5J4J3A2_9FLAO2.450e-8879.66PHB domain-containing protein n=1 Tax=Patiriisociu... [more]
A0A3L9YCV0_9FLAO6.980e-8884.15SPFH domain/Band 7 family protein n=1 Tax=Ulvibact... [more]
A0A5J4G024_9FLAO9.900e-8884.15PHB domain-containing protein n=1 Tax=Patiriisociu... [more]
UPI00193A4AB61.140e-8682.82SPFH domain-containing protein n=1 Tax=Luteirhabdu... [more]
A0A2S7KQ99_9FLAO7.540e-8582.82PHB domain-containing protein n=1 Tax=Aureitalea m... [more]
A0A2U0I5G3_9FLAO3.050e-8483.85PHB domain-containing protein n=4 Tax=Flavobacteri... [more]
A0A0P0D136_9FLAO6.130e-8473.18PHB domain-containing protein n=3 Tax=Flavobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1384contigP-littoralis_Contig1384:24070..24726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1392490.JHZX01000001_gene2844
PFAMsBand_7
Model size659
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-84
EggNOG OGsCOG0330@1|root,COG0330@2|Bacteria,4NEBV@976|Bacteroidetes,1HZ2R@117743|Flavobacteriia
DescriptionMembrane protease subunits, stomatin prohibitin homologs
Cds size657
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.7889361-CDS-P-littoralis_Contig1384:24069..247261680789639.7889361-CDS-P-littoralis_Contig1384:24069..24726Pylaiella littoralis U1_48CDSP-littoralis_Contig1384 24070..24726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1384.9.1prot_P-littoralis_Contig1384.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1384 24070..24726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1384.9.1

>prot_P-littoralis_Contig1384.9.1 ID=prot_P-littoralis_Contig1384.9.1|Name=mRNA_P-littoralis_Contig1384.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
EQRKNFQSVQRIPNAVLIYRTIFWWYCRYIYHKDAMVWCTDIRITILAPR
FCIGKPKWFSVLLLFGKYIGTIKKNGLYWVNPFYSKQKISLRARNFDSER
LKVNDKLGNPIIISTILVWRVRDTHKAAFDVDNYENFVRIQTDAAVRELA
SKYPYDNFADEGTDEDITLRSSMAEVNEALEQELEERHCTIAGIEVLESR
IGYLAYANERIQSVKIDF*
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mRNA from alignment at P-littoralis_Contig1384:24070..24726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1384.9.1 ID=mRNA_P-littoralis_Contig1384.9.1|Name=mRNA_P-littoralis_Contig1384.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1384:24070..24726+ (Pylaiella littoralis U1_48)
GAGCAACGAAAAAATTTCCAATCCGTCCAGCGGATACCTAATGCTGTTCT TATCTATCGCACTATTTTTTGGTGGTATTGCCGCTATATTTATCACAAGG ATGCCATGGTTTGGTGTACTGATATTCGCATCACTATTCTTGCTCCCAGG TTTTGTATTGGTAAACCCAAATGGTTCTCGGTATTACTTCTCTTCGGAAA ATATATAGGGACCATCAAGAAAAATGGGCTGTATTGGGTAAACCCGTTTT ATTCAAAACAAAAAATCTCGTTACGCGCAAGAAATTTTGATAGTGAGCGT CTAAAAGTGAACGATAAGCTGGGAAATCCCATCATTATTAGTACTATTTT GGTTTGGCGGGTACGCGACACACACAAAGCTGCTTTTGACGTAGACAACT ACGAAAACTTCGTGAGAATCCAGACCGATGCTGCCGTGCGTGAACTAGCC AGCAAATATCCATACGACAATTTTGCAGATGAAGGTACTGATGAAGACAT CACCCTTCGCTCTAGTATGGCAGAGGTAAATGAAGCGTTAGAACAGGAAC TTGAAGAGCGCCATTGCACCATTGCAGGTATCGAAGTGTTAGAATCTAGA ATTGGGTATTTGGCTTACGCTAATGAAAGAATACAAAGTGTTAAAATCGA CTTTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1384:24070..24726+

>mRNA_P-littoralis_Contig1384.9.1 ID=mRNA_P-littoralis_Contig1384.9.1|Name=mRNA_P-littoralis_Contig1384.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1384:24070..24726+ (Pylaiella littoralis U1_48)
GAGCAACGAAAAAATTTCCAATCCGTCCAGCGGATACCTAATGCTGTTCT
TATCTATCGCACTATTTTTTGGTGGTATTGCCGCTATATTTATCACAAGG
ATGCCATGGTTTGGTGTACTGATATTCGCATCACTATTCTTGCTCCCAGG
TTTTGTATTGGTAAACCCAAATGGTTCTCGGTATTACTTCTCTTCGGAAA
ATATATAGGGACCATCAAGAAAAATGGGCTGTATTGGGTAAACCCGTTTT
ATTCAAAACAAAAAATCTCGTTACGCGCAAGAAATTTTGATAGTGAGCGT
CTAAAAGTGAACGATAAGCTGGGAAATCCCATCATTATTAGTACTATTTT
GGTTTGGCGGGTACGCGACACACACAAAGCTGCTTTTGACGTAGACAACT
ACGAAAACTTCGTGAGAATCCAGACCGATGCTGCCGTGCGTGAACTAGCC
AGCAAATATCCATACGACAATTTTGCAGATGAAGGTACTGATGAAGACAT
CACCCTTCGCTCTAGTATGGCAGAGGTAAATGAAGCGTTAGAACAGGAAC
TTGAAGAGCGCCATTGCACCATTGCAGGTATCGAAGTGTTAGAATCTAGA
ATTGGGTATTTGGCTTACGCTAATGAAAGAATACAAAGTGTTAAAATCGA
CTTTTAA
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