mRNA_P-littoralis_Contig1381.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1381.1.1
Unique NamemRNA_P-littoralis_Contig1381.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1381.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1381contigP-littoralis_Contig1381:10992..12116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size527
Hectar predicted targeting categoryother localisation
Exons2
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.3481464-UTR-P-littoralis_Contig1381:10991..109931680789639.3481464-UTR-P-littoralis_Contig1381:10991..10993Pylaiella littoralis U1_48UTRP-littoralis_Contig1381 10992..10993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.3573198-CDS-P-littoralis_Contig1381:10993..114361680789639.3573198-CDS-P-littoralis_Contig1381:10993..11436Pylaiella littoralis U1_48CDSP-littoralis_Contig1381 10994..11436 +
1680789639.3652787-CDS-P-littoralis_Contig1381:12034..121161680789639.3652787-CDS-P-littoralis_Contig1381:12034..12116Pylaiella littoralis U1_48CDSP-littoralis_Contig1381 12035..12116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1381.1.1prot_P-littoralis_Contig1381.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1381 10994..12116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1381.1.1

>prot_P-littoralis_Contig1381.1.1 ID=prot_P-littoralis_Contig1381.1.1|Name=mRNA_P-littoralis_Contig1381.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MLCNLPAHGFWRQQQDVDRSLALEAGALSSYFQALGRGPNSQTRSRKVSK
DLSRGGVYRHESLAVGKRVRWMAFVGEGGRKKVFEEKGEDDSIPSEDGRA
GVTGPETAVGVTSPKAAVAPATTPETGGSSSAPLGEDIQPGPEVMQQRVA
WVQGDVLRMMMISPTWGYAFNAHEM
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mRNA from alignment at P-littoralis_Contig1381:10992..12116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1381.1.1 ID=mRNA_P-littoralis_Contig1381.1.1|Name=mRNA_P-littoralis_Contig1381.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1125bp|location=Sequence derived from alignment at P-littoralis_Contig1381:10992..12116+ (Pylaiella littoralis U1_48)
CGATGCTGTGCAATCTCCCGGCACACGGCTTTTGGCGCCAGCAGCAAGAC
GTAGATAGGTCATTGGCGCTCGAAGCTGGGGCACTTAGTTCGTATTTTCA
GGCACTGGGCCGAGGACCAAACTCTCAGACGAGGAGTAGGAAGGTCTCCA
AGGATCTGTCCAGGGGTGGTGTGTATCGCCACGAGAGTTTGGCAGTAGGC
AAGAGGGTCCGGTGGATGGCCTTTGTTGGTGAAGGAGGAAGAAAAAAAGT
ATTCGAGGAGAAGGGAGAGGATGACTCCATACCATCAGAGGATGGCAGAG
CCGGAGTAACGGGGCCCGAGACTGCTGTTGGAGTAACGAGCCCCAAGGCC
GCTGTTGCACCCGCCACCACACCAGAGACGGGAGGCAGTAGTTCTGCCCC
CTTGGGCGAGGACATCCAACCCGGTCCAGAGGTCATGCAACAAAGGCACA
CTTGGTACACGATACAGCTGAGCATAATTTTATTGGAGTTTATACGCTCC
CATGTAGTTACAGTACCAGTTATCGGTACCGTAATTGTCGTCAGCGTCTG
CGTACAGCAGCAGCAGGAGAAGCAGTGGAAATATAATTTGCCTGCTCTTT
CTGTACGGCAGTATTTATACAATAATCTGGTGCTGTTATCAAATTGACAT
TACAGCGACCATCACACTTGCCCACATTACAACCTTCAACTTAATCACCT
ATGAACTTTGATTTACTGGAAAACGCACAACGTCACGCTACAGTATGCTA
CAGTATTATCCCATTGCTCCAAAAGCTTGGGGTCATGGTGACAAATGAAT
TTTTCATGGCGGGGTGTCCCGGGATATGACTCGGGGGTTCCCCAAGTATA
GTTAGCACTAAATACCCAGATTGGAAGGTACAGGGTGCTCTGGGGAGCGG
TGCTGCCGTCTGCCCCGAAATTATTTAGAACTATATTTGGTTTTGTCCTC
TCGCTAATCCGCTGTCTCTCTTCCCAATTGTCTTTTTGCGGGCGTAATTT
ACGCTATGTTTCTGTTTTTTCGTGGTGTTGCCCTACCTTTTAGGGTGGCG
TGGGTCCAGGGCGACGTTCTACGGATGATGATGATCTCCCCGACCTGGGG
CTACGCTTTCAACGCGCACGAGATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1381:10992..12116+

>mRNA_P-littoralis_Contig1381.1.1 ID=mRNA_P-littoralis_Contig1381.1.1|Name=mRNA_P-littoralis_Contig1381.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig1381:10992..12116+ (Pylaiella littoralis U1_48)
ATGCTGTGCAATCTCCCGGCACACGGCTTTTGGCGCCAGCAGCAAGACGT
AGATAGGTCATTGGCGCTCGAAGCTGGGGCACTTAGTTCGTATTTTCAGG
CACTGGGCCGAGGACCAAACTCTCAGACGAGGAGTAGGAAGGTCTCCAAG
GATCTGTCCAGGGGTGGTGTGTATCGCCACGAGAGTTTGGCAGTAGGCAA
GAGGGTCCGGTGGATGGCCTTTGTTGGTGAAGGAGGAAGAAAAAAAGTAT
TCGAGGAGAAGGGAGAGGATGACTCCATACCATCAGAGGATGGCAGAGCC
GGAGTAACGGGGCCCGAGACTGCTGTTGGAGTAACGAGCCCCAAGGCCGC
TGTTGCACCCGCCACCACACCAGAGACGGGAGGCAGTAGTTCTGCCCCCT
TGGGCGAGGACATCCAACCCGGTCCAGAGGTCATGCAACAAAGGGTGGCG
TGGGTCCAGGGCGACGTTCTACGGATGATGATGATCTCCCCGACCTGGGG
CTACGCTTTCAACGCGCACGAGATG
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