mRNA_P-littoralis_Contig138.45.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.45.2
Unique NamemRNA_P-littoralis_Contig138.45.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig138.45.2 vs. uniprot
Match: D8LHK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.550e-23
Identity = 71/125 (56.80%), Postives = 81/125 (64.80%), Query Frame = 2 
Query:  359 GLSSVHRRSV--AATESFMMTTKDFLANGSSPTTSNCGLKLYNDLTRGTYEACETYGNDKLVGAAIPDFAVTFVEVYAVE*FPFFFFWDGKKEK*GYTKYSEVLYRRRTPCLHFDTKGG--VVIC 721
            GL SVH++     ATESFMMTTKDFLA GSSP TSNCGLKLYNDLTRG+ +ACETYGN++LVG    DFAVT VEVYA +       WD  K   G  K + +   RR   L  D  G   VV+C
Sbjct:  601 GLGSVHKKQPPSVATESFMMTTKDFLAMGSSPVTSNCGLKLYNDLTRGSSDACETYGNERLVGPTTADFAVTCVEVYAFD-------WDEGK---GRGKKTPLNGERRV--LMIDQSGTCLVVLC 713
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.45.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHK6_ECTSI1.550e-2356.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:220737..224874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHK6
Preferred nameTBC1D24
PFAMsRabGAP-TBC,TLD
Model size1153
Max annot lvl2759|Eukaryota
KEGG koko:K21841
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0008047,GO:0008150,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010605,GO:0010646,GO:0010647,GO:0010720,GO:0010769,GO:0010770,GO:0010941,GO:0010975,GO:0010976,GO:0016020,GO:0016043,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030234,GO:0030334,GO:0030335,GO:0030424,GO:0030695,GO:0031175,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031594,GO:0031644,GO:0031646,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0033267,GO:0040012,GO:0040017,GO:0042391,GO:0042995,GO:0043005,GO:0043085,GO:0043087,GO:0043195,GO:0043547,GO:0043679,GO:0044057,GO:0044093,GO:0044306,GO:0044424,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050804,GO:0050806,GO:0051049,GO:0051051,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060341,GO:0060548,GO:0060589,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0098693,GO:0098772,GO:0098793,GO:0098815,GO:0098916,GO:0099177,GO:0099536,GO:0099537,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0150034,GO:1900006,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1902083,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204,GO:1903421,GO:1903422,GO:2000026,GO:2000145,GO:2000147,GO:2000169,GO:2000463,GO:2001222,GO:2001224
Exons4
Evalue2.51e-26
EggNOG OGsCOG5142@1|root,KOG2801@2759|Eukaryota
DescriptionGTPase activator activity
Cds size450
COG categoryL
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.45.2prot_P-littoralis_Contig138.45.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 221295..222810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789637.1684515-UTR-P-littoralis_Contig138:220736..2212941680789637.1684515-UTR-P-littoralis_Contig138:220736..221294Pylaiella littoralis U1_48UTRP-littoralis_Contig138 220737..221294 -
1680789637.2201874-UTR-P-littoralis_Contig138:222810..2228561680789637.2201874-UTR-P-littoralis_Contig138:222810..222856Pylaiella littoralis U1_48UTRP-littoralis_Contig138 222811..222856 -
1680789637.2287672-UTR-P-littoralis_Contig138:224775..2248741680789637.2287672-UTR-P-littoralis_Contig138:224775..224874Pylaiella littoralis U1_48UTRP-littoralis_Contig138 224776..224874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789637.1864574-CDS-P-littoralis_Contig138:221294..2214531680789637.1864574-CDS-P-littoralis_Contig138:221294..221453Pylaiella littoralis U1_48CDSP-littoralis_Contig138 221295..221453 -
1680789637.196905-CDS-P-littoralis_Contig138:221920..2220541680789637.196905-CDS-P-littoralis_Contig138:221920..222054Pylaiella littoralis U1_48CDSP-littoralis_Contig138 221921..222054 -
1680789637.2057743-CDS-P-littoralis_Contig138:222653..2228101680789637.2057743-CDS-P-littoralis_Contig138:222653..222810Pylaiella littoralis U1_48CDSP-littoralis_Contig138 222654..222810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.45.2

>prot_P-littoralis_Contig138.45.2 ID=prot_P-littoralis_Contig138.45.2|Name=mRNA_P-littoralis_Contig138.45.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
MEAVNGEGGGTGEDGGLSDPAGSLAAAVAAGTGLAFSTKVSSHPALPSAR
RPSSNGQSPSAARRNAALRVVGLSSVHRRSVAATESFMMTTKDFLANGSS
PTTSNCGLKLYNDLTRGTYEACETYGNDKLVGAAIPDFAVTFVEVYAVE*
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mRNA from alignment at P-littoralis_Contig138:220737..224874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.45.2 ID=mRNA_P-littoralis_Contig138.45.2|Name=mRNA_P-littoralis_Contig138.45.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4138bp|location=Sequence derived from alignment at P-littoralis_Contig138:220737..224874- (Pylaiella littoralis U1_48)
GGGCGATGGCATGGAGGGCAGTGGCGGCGGCGATGGTGGCGTGCCCCCCA
GCGCGTACTGCAGCGTTAATGGCAAGACCGTGGCGGTCGTGGTCAGAAGG
TGAGAGAAACGGACGATGGTTTCCCTCAAGGAGCCTCAAGGAGGTCTTTG
TCGCTGTCGCGGCACTTCACGTCACCCTTCGAGGAGGGGGATTGGATATT
TGCTCGCGTATACAGTATACATTGATTACGTGGGATCAGATTTGATGGGA
CAAGTTTTTTTCATCTTCGAAGACGGCGTCCCTTTTTTTAGCCCGGCAAT
ACCCGATTCTGTCTGCTGCATGTATGACCTCCCTGTCGACCCGCCCATCA
AAAAGAGGCATTTTTCTTCAAACGTTCGCACAGAAAGAGGGAAATGGTAG
AGAGTTTGCGCAAAAGGATTTCTTATCTCGAATTTCCTTTCTTGGTTTCC
CCGAGCTTTCCCGAGAGGCTCCGTGACTGCACTGAAAAGAAAAGGACGTT
TGATCTTCCAAGCGGGCCCGCGTCGGCACGCCATGTCATTGGTCAAATCA
ACCCGGCACCATCCCGACCTGATGTTTGTGTGTGTCAGAGTATTTGCCCG
GACCCGGACCAAAAGTGTGCACAGCAGTATTTCTGTACAGCAGTGGAGGG
TGGCTCCACACAACACACCATGCAACTGCTGCTGCGGTAGAGTACAAGAG
CTGGCAAGTTTGTTGTGTTATTTGTTTCTTCTACAGCAGCAGCAGCAGCA
GCAGGAGAGAGATGAGAGTGTGTGCCTGTTCTGTTGGGTTGTTGTGATAC
TCTCTGTGATCTGTGACAGCAAGCGTTTTTTTTTCGTATTCCTTCGCCTG
ACCCGGCACTACTACTAACTGCACCACAGCAGGAGACTCACCGTATTGGC
TCTTCTACAGCACCGGCAGATAGGGCGTGTGCTGTGTGTATGTTGCTTTG
ACATCAGCAGTGGATTATGGGTGTGGTGGGGCACGGCGCGCGTTTGTGTG
ATGGTGCGAAGTGGGGGTACCCTACAGCAGTAGAGACGCCGAAAAATGAA
TTCCCAACCTGAAATACGAACGACCTTCTCTTTGCACTTGAGAATAATAT
AACCCTTGTTACTCCGGCTTCTAAAACCACTAGTCACACAGCGATGCTTT
TCTCAAGCCTCTCTGCTCTGCCGAGACCCCTGAGTTCGCATTTCCTTCGC
CTGAATTGGCACCCTCCACCACCACTACGACAGCCGTAAGACTCATGGTG
TCGGCTCCTCTACAGCAGCAGCAGCAGCAGCAGTGGGTACATGTATTTTG
TGTGTGAAATGCTCTCTGTACGCGGCAGTGTGTGTGGGACCGGGTGTGCG
TTGACACCTTGTTTGTCCTCCAGAAAGCAACTGAAACGAGTTTTCTTTTT
CCCTTTTGCGCGAATTCTTTTTCAAATTTCGGGTATAGGAAATTCTTATT
TCGCCGCACTTTTTTATTTATATATTCAAGAAAGGAAATTTGAGATCGGA
AATCCTTTTGCGCATACTCTCTAATCATGGAACTTGTCTTCCGGGGGGGG
CGGGGGGGAGGGCTCGACGCCGTGATACGAACCCACTTTTGAAGAGGCAG
GCAGACATCACTGCAGCAGGTAGTAGTGCTCATCCTGTCCTCCCTTTCTG
CTTGACGTTTTCCGTGAAGGGCAGCGGGCGTGGTCGCGAGTGATAGGGGT
GTTGCTCAACGTGTCCCTGCCGAAGACTAGAAAGGCCGCCGTCGCGGGCG
AGATAGGCTAACGGTGGTACCGGTAATGCCACACGGCATAATCATGACTG
GATTCACACAACATGATGCCACCATTTTTGCTGTCTAAAAGTCACCCACA
GCAACTCTCGCGCAAGGTCCTCAAAACGGATTTGTGATTTTTGTGCGTCA
CGCTTTTCTCAAGTTTCACGCTCTGCTGTGCTGTACGTTGCGTAACAAGC
CCCCCCCGCCCCCGCCCTCAACCCTTCTCCCCCCCCCCCCCACTCGCCCC
GCTCCCCACCGCGCGCAGGTTACAACCTTCACAGCTGCTGCTGAGCCTAA
CCTGAACCTGTCGTATGGAGGCGGTGAACGGGGAAGGGGGAGGCACCGGC
GAAGACGGCGGCTTGTCTGACCCCGCGGGCTCGCTTGCAGCTGCCGTCGC
TGCCGGTACTGGGCTGGCTTTCTCGACGAAGGTCTCGTCCCACCCAGCCT
TGCCCTCCGCGCGTCGGCCGAGTAAGTACTGCAGTAATTGCGAGCAGTAT
TTTGTCTCTTTTTTAGCACCTAATGTTGCAGTAGGTAATATTGCAGTGTA
TGGTCATGGTCTCAAAAGAAATCTCGTTGCCAACGAAGATGGTACTTCGA
AGTATGAAGCAGCAGCAGCAGCAGCAGCAGCCTAAATAGGCGAGGGTGGG
CCTAGACATGTGGAAGTATTCAAGAAAGTCAACTTCAGCACCCTTCCTTT
CTCTGCGACCCGATCGATTTGGGCACATTTCGGAACGAGCTGTCTTTGTA
CCAATTTTCAAGTTAGTTGGTCTGTGTCTCGAGCTGTATCGTTCGTCAGT
ATGGTTATCGTTTCGTTTCAGATTCAATGTGACAGCTCATGCTGGCATTC
AAAATATCCGTATCGTACAGCAGTACGCATTTCACGAACACACCGACCGG
TATTCTGTCGACAATTTTGTATCGACGACATTTTTCTGTTGACCCCTTTC
TTTTGTTTTTCGAAGCAAGCCACGCATCGTACGAACGCAGTAGTAGCTCC
ACAAATATGCAAGCGCATGCCCTCGTATTAGGAAAACACTCGTGTTTTAT
TATATTTTGTTTGTTTCTAGGTTCGAACGGCCAGTCTCCATCAGCAGCGC
GGCGGAATGCTGCGCTCAGAGTTGTCGGGCTTAGCAGCGTTCACCGGAGG
TCCGTCGCAGCTACGGAGAGCTTTATGATGACCACGAAGGACTTCCTCGC
CAATGTGCGTTTTTTCTTTCTTCTTTTCCGTCTCTGTGTGTGTCGTTCTT
TTGAACATTGGGCGGTTTGTGTTGAGTCACCAAGCTTGTGCTCGCCACTG
CTGGCTGATGGTGTTGGTGTCGGTGGTGCTGTTGTTGCCCCATCAGACTA
CTACTGTGTTGATGATGATTTATTGTTGTCACCATACATCCGTGTCGCAT
TAAATGTGTTGTGCACTCAAGGCTGTGTCCCTCGGACCACCACCACAACG
GCCATCGATGATGGCGACGATGATCTAGCAGTCCAAGAGCTGTTCTGTTA
TCCTAGCCCTATTTGTAAGCGGGATCTAGAGTTGATCGCCCCCACTCCTC
GGGGTGTGTAGTACCAGGGTATACTGTACTGTAGCAGTATTTTGTTAAAC
AAAGAATCTGAGGCTCGTTTTCTACCTTACCGCGCTGTAAATATAAATTT
ACGACGCCACCACGTAATCAGGGCTCGAGCCCTACGACGTCGAACTGCGG
GCTGAAGCTGTACAACGACCTGACGCGAGGGACGTACGAGGCGTGCGAGA
CTTACGGCAACGATAAGCTGGTGGGAGCGGCGATACCGGACTTTGCGGTG
ACCTTCGTCGAAGTCTACGCGGTCGAGTGATTTCCCTTTTTTTTTTTCTG
GGATGGAAAAAAAGAAAAATAAGGATATACGAAGTACTCCGAAGTATTAT
ACAGAAGGAGGACCCCCTGCCTGCATTTTGACACTAAGGGAGGTGTAGTA
ATATGTGTCTTGCATCGCTGCGCTTGATGATTACTCTGCTCCTCCCCCTC
CTCCCTTCTTTTTTACGGGAATTATATTTCGACAACTGGCCGTCAATCGG
TTCGGCAGTGATCGTTTGGTTCTGAGTGGAGGGGATACCGTGTGGGTGCG
TTTGTGTGAGTGTTGGTTTGACTGTAAGGGGAGTATGATAGGAATGTAGA
CAGGCAAAGGAAACTGAGGGCAAGACGTCGTATTCGGCTAGGTTTTTACG
GAGGCAGAGCGAGGGGCCGACCAGCAGTATCACCCACCACCAGCATCAGG
ACCAGCCGTGACCGTACCCCATACTCTCTGATCTCAAGCTTTACCTGGAT
TTTCGTGCTTTTATAGCCCAAAGTTTTTTCATGACCTTTTGTATCCTAGA
GTTCGAATCGTTGTCATGATTTACACAACAGACAGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig138:220737..224874-

>mRNA_P-littoralis_Contig138.45.2 ID=mRNA_P-littoralis_Contig138.45.2|Name=mRNA_P-littoralis_Contig138.45.2|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig138:220737..224874- (Pylaiella littoralis U1_48)
ATGGAGGCGGTGAACGGGGAAGGGGGAGGCACCGGCGAAGACGGCGGCTT
GTCTGACCCCGCGGGCTCGCTTGCAGCTGCCGTCGCTGCCGGTACTGGGC
TGGCTTTCTCGACGAAGGTCTCGTCCCACCCAGCCTTGCCCTCCGCGCGT
CGGCCGAGTTCGAACGGCCAGTCTCCATCAGCAGCGCGGCGGAATGCTGC
GCTCAGAGTTGTCGGGCTTAGCAGCGTTCACCGGAGGTCCGTCGCAGCTA
CGGAGAGCTTTATGATGACCACGAAGGACTTCCTCGCCAATGGCTCGAGC
CCTACGACGTCGAACTGCGGGCTGAAGCTGTACAACGACCTGACGCGAGG
GACGTACGAGGCGTGCGAGACTTACGGCAACGATAAGCTGGTGGGAGCGG
CGATACCGGACTTTGCGGTGACCTTCGTCGAAGTCTACGCGGTCGAGTGA
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