mRNA_P-littoralis_Contig1378.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1378.11.1
Unique NamemRNA_P-littoralis_Contig1378.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.680e-32
Identity = 60/99 (60.61%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEK 297
            +N+DE LPLPL Y++YVKT+  L L + +  T KQ ++ +Q+VCIVY+CLAVKRNAG++  E+K AAAA+GY EIAVPGFFRWARDNDI  P+ LT+++
Sbjct:    3 INVDEVLPLPLVYNDYVKTSINLALENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKR 101          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.320e-30
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVE 294
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFE 101          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.510e-29
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVE 294
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFE 101          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.730e-29
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVE 294
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFE 101          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.230e-26
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 294
            M LD    LPLE++ Y +T   ++   +  +T  +LL H+Q+VCIVYACLAVKRNAGI+  ++K AAA +GY++IAVPGFF+W ++N    D  L  WLT E
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAPQGYKDIAVPGFFKWLQENLDKEDFFLQLWLTFE 105          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.450e-23
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNED--ITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 294
            M LD    LPLE++ Y +T   + L D     +T  +LL H+Q+VCIVYACLAVKRNAGI+  ++K AA AKGY++IAVPGFF+W ++N          WLT E
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISM-LRDKRSSGLTDTKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAVAKGYKDIAVPGFFKWLKENLEADQYFSQPWLTFE 106          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.040e-23
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 294
            M LD    LPL+++ Y +T   ++   +  +T  +LL  +Q+VCIVYACLAVKRNAG++  ++K A AA+GY++IAVPGFF+W ++N    D  L  WLT E
Sbjct:    4 MKLDGVQSLPLKFNSYAETVISMLRDRSSGLTDAKLLKPLQNVCIVYACLAVKRNAGMVFTQAKHATAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFE 105          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5K889_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K889_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.130e-21
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARD 258
            M LD    L LE++ Y +T   ++   +  +T  +LL H+Q+VCIVYACLAVKRNAGI+  ++K AAA +GY++IAVPGFF+W ++
Sbjct:    4 MKLDGVQSLSLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAVQGYKDIAVPGFFKWLQE 89          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.580e-21
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWAR 255
            M +D    LPLE + YV+    L+L     +++ +LL H+QSVCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGF++W R
Sbjct:    4 MKIDHVQRLPLELNGYVEGTLDLLLGGGNGLSKIKLLKHLQSVCIVYACLAVKRNAGIVSMEAKHKAAAKGYKDIAVPGFYKWLR 88          
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Match: A0A6H5JPS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.310e-20
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVE 294
            M LD    LPLE++ Y +T   ++   +  +T  +LL H+Q+  IVYACLAVKRNAGI+  ++K AAAA+GY++IAVP FF+W ++N    D  L  WLT E
Sbjct:  400 MKLDGVQSLPLEFNSYAETVVSMLRDRSSGLTDAKLLKHLQNGRIVYACLAVKRNAGIVSTQAKHAAAAQGYKDIAVPSFFKWLQENLDKEDSFLQPWLTFE 501          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1378.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.680e-3260.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDP2_9PHAE2.320e-3058.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY9_9PHAE1.510e-2958.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZP4_9PHAE1.730e-2958.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ8_9PHAE4.230e-2650.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR6_9PHAE2.450e-2350.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF32_9PHAE3.040e-2347.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K889_9PHAE1.130e-2150.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGS6_9PHAE6.580e-2155.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPS0_9PHAE1.310e-2048.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1378contigP-littoralis_Contig1378:16807..17103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.3353093-CDS-P-littoralis_Contig1378:16806..171031680789635.3353093-CDS-P-littoralis_Contig1378:16806..17103Pylaiella littoralis U1_48CDSP-littoralis_Contig1378 16807..17103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1378.11.1prot_P-littoralis_Contig1378.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1378 16807..17103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1378.11.1

>prot_P-littoralis_Contig1378.11.1 ID=prot_P-littoralis_Contig1378.11.1|Name=mRNA_P-littoralis_Contig1378.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACL
AVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEK
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mRNA from alignment at P-littoralis_Contig1378:16807..17103-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1378.11.1 ID=mRNA_P-littoralis_Contig1378.11.1|Name=mRNA_P-littoralis_Contig1378.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1378:16807..17103- (Pylaiella littoralis U1_48)
ATGAATCTCGATGAGACGCTGCCACTTCCGCTGGAGTACTCGGAGTACGT GAAGACCGCCGCGAAGCTCGTCTTATTGGACAACGAGGACATAACACAGA AGCAGCTACTGATACACATGCAGAGCGTGTGTATAGTCTACGCGTGCCTG GCAGTGAAGCGGAACGCCGGCATATTGGATAAGGAAAGCAAACTCGCTGC TGCGGCGAAAGGATATGAGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGG CACGGGACAACGATATCGTGCTTCCTGCGTGGCTGACTGTGGAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1378:16807..17103-

>mRNA_P-littoralis_Contig1378.11.1 ID=mRNA_P-littoralis_Contig1378.11.1|Name=mRNA_P-littoralis_Contig1378.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1378:16807..17103- (Pylaiella littoralis U1_48)
ATGAATCTCGATGAGACGCTGCCACTTCCGCTGGAGTACTCGGAGTACGT
GAAGACCGCCGCGAAGCTCGTCTTATTGGACAACGAGGACATAACACAGA
AGCAGCTACTGATACACATGCAGAGCGTGTGTATAGTCTACGCGTGCCTG
GCAGTGAAGCGGAACGCCGGCATATTGGATAAGGAAAGCAAACTCGCTGC
TGCGGCGAAAGGATATGAGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGG
CACGGGACAACGATATCGTGCTTCCTGCGTGGCTGACTGTGGAGAAG
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