mRNA_P-littoralis_Contig137.98.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig137.98.1
Unique NamemRNA_P-littoralis_Contig137.98.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.600e-49
Identity = 82/108 (75.93%), Postives = 98/108 (90.74%), Query Frame = 1
Query:  178 YSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 501
            +SGNFGRSEYAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R
Sbjct:  548 WSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQR 655          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 5.840e-45
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  166 CTCIYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 501
            C  I++GNFGRS+YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+    D P ++N R
Sbjct:   31 CVRIHAGNFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLR 140          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.110e-38
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1
Query:  187 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRH 504
            NFGRS+YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+    D P ++N R+
Sbjct:  428 NFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRY 533          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.380e-32
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:  184 GNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFV 417
            GNFGRS+YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + T+G   WK +FIT++SWTDIRV ILG V
Sbjct:   24 GNFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.120e-28
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  238 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVS 465
            GYI S DDSKL+ELMDIL FF++WR +LE + T+GD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKIS 78          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.990e-26
Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = 1
Query:  175 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTVGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV-SRPRDTPRYVNPRHHCQ 513
            I++GN+GRS+  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++ S   +  R+++PR+  Q
Sbjct:   62 IFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQ 179          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.790e-21
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  175 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 447
            I +G +G +E  RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  471 IMNGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.250e-19
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  238 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVS 420
            GYI SAD SKLE LMDILRFF++WR +LE + T+GD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.910e-15
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  235 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYS 381
            AGYI SADDSKLEELMDILRF  +WR +LE ++T+GD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.170e-6
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  190 FGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 447
            + R      K +D +   ITS D   L+ L++IL +F+ W  +L       D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  493 YNRDPIDVSKRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLN-LFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDD 577          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig137.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.600e-4975.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE5.840e-4566.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE2.110e-3864.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE6.380e-3271.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE1.120e-2867.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE1.990e-2648.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.790e-2150.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE2.250e-1967.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE1.910e-1569.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE4.170e-634.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig137contigP-littoralis_Contig137:468537..469050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size514
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789634.3678443-CDS-P-littoralis_Contig137:468537..4690501680789634.3678443-CDS-P-littoralis_Contig137:468537..469050Pylaiella littoralis U1_48CDSP-littoralis_Contig137 468538..469050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig137.98.1prot_P-littoralis_Contig137.98.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig137 468538..469050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig137.98.1

>prot_P-littoralis_Contig137.98.1 ID=prot_P-littoralis_Contig137.98.1|Name=mRNA_P-littoralis_Contig137.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
STYLDEAITNIVSRPNAIEQKGEHGPTCFFFLYISSRNVHTLCASFVSSH
TAPCTCTCIYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFF
EKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDS
RFKVSRPRDTPRYVNPRHHCQ
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mRNA from alignment at P-littoralis_Contig137:468537..469050-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig137.98.1 ID=mRNA_P-littoralis_Contig137.98.1|Name=mRNA_P-littoralis_Contig137.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=514bp|location=Sequence derived from alignment at P-littoralis_Contig137:468537..469050- (Pylaiella littoralis U1_48)
TCGACATATCTCGACGAGGCGATCACTAATATTGTTTCACGTCCCAACGC GATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTTTTTTTTTTATATA TTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCAC ACGGCCCCATGTACGTGTACGTGTATATATTCAGGAAACTTCGGCCGCTC GGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACAT CGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTC GAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCAC CTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGT CCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCG AGGTTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCG GCACCATTGCCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig137:468537..469050-

>mRNA_P-littoralis_Contig137.98.1 ID=mRNA_P-littoralis_Contig137.98.1|Name=mRNA_P-littoralis_Contig137.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig137:468537..469050- (Pylaiella littoralis U1_48)
TCGACATATCTCGACGAGGCGATCACTAATATTGTTTCACGTCCCAACGC
GATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTTTTTTTTTTATATA
TTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCAC
ACGGCCCCATGTACGTGTACGTGTATATATTCAGGAAACTTCGGCCGCTC
GGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACAT
CGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTC
GAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCAC
CTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGT
CCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCG
AGGTTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCG
GCACCATTGCCAG
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