mRNA_P-littoralis_Contig136.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig136.90.1
Unique NamemRNA_P-littoralis_Contig136.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Match: A0A6H5LNB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNB5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.580e-7
Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 2 
Query:  206 LPAPRQF-QCGRRQRNCPSVLAVVSLNLQFHMGTNMGTPENLSDSCVQLSDVYAIDQLPFNIFSLHQAQNRQLIVLNQDGITCLVVALRFLVVN 484
            +PA +QF Q G        V  V  +N+ FHM      P   +D CVQ+SDVY +  + FN+FSLH  Q RQ I L  D +TC+ +   F +++
Sbjct:    7 IPAGKQFIQVGNGAHL--RVQCVEGINMAFHMPG----PSGETDFCVQMSDVYVVPGITFNLFSLHHTQRRQRITL--DKMTCISLMASFPLLS 92
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BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.290e-6
Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 2 
Query:  206 LPAPRQF-QCGRRQRNCPSVLAVVSLNLQFHMGTNMGTPENLSDSCVQLSDVYAIDQLPFNIFSLHQAQNRQLIVLNQDGITCLVVALRFLVVNV 487
            +PA R+F Q G        V  V S N+ FHM      P   +D CVQ+SDVY +  + FN+FSLH  Q RQ I L+ +G+      L F   +V
Sbjct:    7 IPAGREFIQVGNSAYL--RVQCVGSNNMTFHMPD----PSGEADFCVQISDVYVVPGITFNLFSLHHTQRRQRITLDDNGVHLFNGQLSFAYSDV 95
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BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.310e-5
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 2 
Query:  251 CPSVLAVVSLNLQFHMGTNMGTPENLSDSCVQLSDVYAIDQLPFNIFSLHQAQNRQLIVLNQDGI 445
            C  V  + ++N+ FHM    G      D CVQ+SDVY +  + FN+FSLH  Q +Q IVL++ G+
Sbjct:   21 CLRVQCLGTVNMAFHMQDQGGE----RDVCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGV 81
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BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Match: A0A6H5KNR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.000e-5
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:  206 LPAPRQF-QCGRRQRNCPSVLAVVSLNLQFHMGTNMGTPENLSDSCVQLSDVYAIDQLPFNIFSLHQAQNRQLIVLNQDGI 445
            +P  +++ Q G     C   L  V  N+ FHM    G      D CVQ+SDVY +  + FN+FSLH  Q +Q IVL++ G+
Sbjct:    7 VPTSKEYIQVGNGAYLCVQCLGTV--NMAFHMQDQGGE----RDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGV 81
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BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.540e-5
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 2 
Query:  260 VLAVVSLNLQFHMGTNMGTPENLSDSCVQLSDVYAIDQLPFNIFSLHQAQNRQLIVLNQDGITCLVVALRFLVVNV 487
            V  V  +N+ FHM    G      D CVQ+SDVY +  + FN+FSLH  Q +Q IVL++ G+      L F   +V
Sbjct:   24 VQCVGKVNMAFHMQDQGGE----LDFCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDV 95
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BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.570e-5
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 2 
Query:  260 VLAVVSLNLQFHMGTNMGTPENLSDSCVQLSDVYAIDQLPFNIFSLHQAQNRQLIVLNQDGI 445
            V  V S+NL FHM    G      D CVQL+DVY +  + FN+FSLHQ Q +  I+L++ G+
Sbjct:   24 VECVGSVNLAFHMA---GGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQKKHRIMLDERGV 82
[Close]
BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.860e-5
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 2 
Query:  260 VLAVVSLNLQFHMGTNMGTPENLSDSCVQLSDVYAIDQLPFNIFSLHQAQNRQLIVLNQDGI 445
            V  + ++N+ FHM    G      D CVQ+SDVY +  + FN+FSLH  Q +Q IVL++ G+
Sbjct:  378 VQCLGTVNMAFHMQDQGGE----RDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGV 435
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig136.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5LNB5_9PHAE2.580e-738.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW31_9PHAE6.290e-638.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX85_9PHAE1.310e-541.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNR6_9PHAE2.000e-538.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU31_9PHAE3.540e-539.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKY9_9PHAE3.570e-545.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCK7_9PHAE8.860e-541.94Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig136contigP-littoralis_Contig136:481257..481801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3750.XP_008359393.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Model size545
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.69e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3G9AM@35493|Streptophyta
Descriptioncysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size270
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789630.7113998-UTR-P-littoralis_Contig136:481256..4812671680789630.7113998-UTR-P-littoralis_Contig136:481256..481267Pylaiella littoralis U1_48UTRP-littoralis_Contig136 481257..481267 +
1680789630.7330356-UTR-P-littoralis_Contig136:481537..4818011680789630.7330356-UTR-P-littoralis_Contig136:481537..481801Pylaiella littoralis U1_48UTRP-littoralis_Contig136 481538..481801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789630.7244825-CDS-P-littoralis_Contig136:481267..4815371680789630.7244825-CDS-P-littoralis_Contig136:481267..481537Pylaiella littoralis U1_48CDSP-littoralis_Contig136 481268..481537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig136.90.1prot_P-littoralis_Contig136.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig136 481268..481537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig136.90.1

>prot_P-littoralis_Contig136.90.1 ID=prot_P-littoralis_Contig136.90.1|Name=mRNA_P-littoralis_Contig136.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MARSVSRGESSVASVSGNFGLGGFALFNQDAIAFDVVEDGAEKWVADTGA
THHTTGSLDQLFTLRCPPPGNSNVVVGNGTVLPSWLLLV*
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mRNA from alignment at P-littoralis_Contig136:481257..481801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig136.90.1 ID=mRNA_P-littoralis_Contig136.90.1|Name=mRNA_P-littoralis_Contig136.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=545bp|location=Sequence derived from alignment at P-littoralis_Contig136:481257..481801+ (Pylaiella littoralis U1_48)
TTCACCTGTGCATGGCACGTTCAGTGTCACGAGGCGAGTCCAGTGTTGCT
TCTGTTTCGGGGAATTTCGGGCTGGGTGGTTTTGCTTTGTTCAATCAGGA
TGCTATAGCCTTCGATGTTGTGGAGGATGGTGCAGAAAAATGGGTAGCAG
ACACTGGTGCAACTCATCACACGACTGGTAGCCTAGACCAGCTGTTCACC
CTGCGTTGCCCGCCCCCAGGCAATTCCAATGTGGTCGTAGGCAACGGAAC
TGTCCTTCCGTCTTGGCTGTTGTTAGTCTGAACCTGCAATTTCACATGGG
CACCAATATGGGAACCCCAGAAAATCTGTCTGACTCCTGTGTGCAGTTGA
GCGATGTGTACGCGATTGACCAACTTCCTTTCAATATTTTCTCGCTGCAC
CAAGCCCAGAATAGGCAGCTCATTGTTCTCAATCAGGACGGGATCACTTG
TTTGGTGGTAGCCTTACGTTTCCTCGTGGTGAACGTGCATCCTCGTTGCG
CGCAACGCGCTTGGTGCCCACGTATAACCTTCCCCTGGCGACCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig136:481257..481801+

>mRNA_P-littoralis_Contig136.90.1 ID=mRNA_P-littoralis_Contig136.90.1|Name=mRNA_P-littoralis_Contig136.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig136:481257..481801+ (Pylaiella littoralis U1_48)
ATGGCACGTTCAGTGTCACGAGGCGAGTCCAGTGTTGCTTCTGTTTCGGG
GAATTTCGGGCTGGGTGGTTTTGCTTTGTTCAATCAGGATGCTATAGCCT
TCGATGTTGTGGAGGATGGTGCAGAAAAATGGGTAGCAGACACTGGTGCA
ACTCATCACACGACTGGTAGCCTAGACCAGCTGTTCACCCTGCGTTGCCC
GCCCCCAGGCAATTCCAATGTGGTCGTAGGCAACGGAACTGTCCTTCCGT
CTTGGCTGTTGTTAGTCTGA
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