|
|
Homology
BLAST of mRNA_P-littoralis_Contig136.59.1 vs. uniprot
Match: A0A6H5K5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.590e-6 Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 2
Query: 347 LKAVVYPISGRVFMTHCLKTSCDVTLEVMMRGYHVLGDFLAEVATLVLFSAP------------TRATLFN--TRRSTALPRGKPDSGRSSNGGFACRTARAFQETLWYSVYEFMTGPHSVAHDVGSLHPSLYPNSNIVRFVAPYANAED 754
L ++ I R H T +TL ++ + DFL +V T L A T T+ TR+S A + S GGF ARAFQE+LWY++++FMTGP + ++ S + I+RF+APY +D
Sbjct: 332 LTGLMSRIMWRFTKAHQASTRKALTLGFLLGPERLKDDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWI-------KLSAGGFGSANARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYFVEKD 474
BLAST of mRNA_P-littoralis_Contig136.59.1 vs. uniprot
Match: A0A6H5KF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 6.400e-6 Identity = 44/150 (29.33%), Postives = 68/150 (45.33%), Query Frame = 2
Query: 347 LKAVVYPISGRVFMTHCLKTSCDVTLEVMMRGYHVLGDFLAEVATLVLFSAP------------TRATLFN--TRRSTALPRGKPDSGRSSNGGFACRTARAFQETLWYSVYEFMTGPHSVAHDVGSLHPSLYPNSNIVRFVAPYANAED 754
L ++ + R + T +TL ++ + DFL +V T L A T T+ TR+S A + S GGF ARAFQE+LWY++++FMTGP + ++ S + I+RF+APY +D
Sbjct: 75 LTGLMSRVMWRFTKAYQASTRKTLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWI-------KLSAGGFGSADARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYYVEKD 217
BLAST of mRNA_P-littoralis_Contig136.59.1 vs. uniprot
Match: A0A6H5KHD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD1_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 2.680e-5 Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 2
Query: 575 SNGGFACRTARAFQETLWYSVYEFMTGPHSVAHDVGSLHPSLYPNSNIVRFVAPYANAED 754
S GGF ARA QE+LWY++++FMTGP + ++ S + I+RF+APY +D
Sbjct: 162 SAGGFGSANARAIQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYYVEKD 221
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1586 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Cds size | 525 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789629.3892105-UTR-P-littoralis_Contig136:323535..323833 | 1680789629.3892105-UTR-P-littoralis_Contig136:323535..323833 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig136 323536..323833 + |
| 1680789629.4438474-UTR-P-littoralis_Contig136:329796..330559 | 1680789629.4438474-UTR-P-littoralis_Contig136:329796..330559 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig136 329797..330559 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789629.3982198-CDS-P-littoralis_Contig136:323833..323878 | 1680789629.3982198-CDS-P-littoralis_Contig136:323833..323878 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig136 323834..323878 + |
| 1680789629.4067452-CDS-P-littoralis_Contig136:328323..328452 | 1680789629.4067452-CDS-P-littoralis_Contig136:328323..328452 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig136 328324..328452 + |
| 1680789629.4155247-CDS-P-littoralis_Contig136:328641..328790 | 1680789629.4155247-CDS-P-littoralis_Contig136:328641..328790 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig136 328642..328790 + |
| 1680789629.4264452-CDS-P-littoralis_Contig136:329220..329351 | 1680789629.4264452-CDS-P-littoralis_Contig136:329220..329351 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig136 329221..329351 + |
| 1680789629.4351187-CDS-P-littoralis_Contig136:329725..329796 | 1680789629.4351187-CDS-P-littoralis_Contig136:329725..329796 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig136 329726..329796 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig136.59.1 >prot_P-littoralis_Contig136.59.1 ID=prot_P-littoralis_Contig136.59.1|Name=mRNA_P-littoralis_Contig136.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MWTRDTFSRPCFNGNVLKAVVYPISGRVFMTHCLKTSCDVTLEVMMRGYH VLGDFLAEVATLVLFSAPTRATLFNTRRSTALPRGKPDSGRSSNGGFACR TARAFQETLWYSVYEFMTGPHSVAHDVGSLHPSLYPNSNIVRFVAPYANA EDGREEDRGASATGGGRRWQRQRQ* back to topmRNA from alignment at P-littoralis_Contig136:323536..330559+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig136.59.1 ID=mRNA_P-littoralis_Contig136.59.1|Name=mRNA_P-littoralis_Contig136.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7024bp|location=Sequence derived from alignment at P-littoralis_Contig136:323536..330559+ (Pylaiella littoralis U1_48) CACCGACATGTGCAACGACATGTTGAATCGACTGCTGTGCCTGCAACAGA
GAGCGCACCCTTCTTCTTACGAAGTATGCCGATGTGGACTCGACCAGTAG
ATTGTGGCGTCTCCACCAAAGCCAGAGAGAACAGACGCTTGCCTCGATGC
AGCATTTTCATGCCATCGATCAGCAGGGTGAACATGAAACGGAGAGAGAG
AAGAGGGAGGGGGGGGAGAGAGAGCGCGCGATGACCTTAAATGACGGGGA
GAGAAAGAGAAAGGTCTATGAGCAGGACATGAGGAGCGTGAGGAGTCCAT
GTGGACACGCGACACCTTCTCACGGCCGTGTTTCAACGGAAACGTGAGTA
CTTCCGCAATGCTGTTTGGTAGCAACGCTGCAGGCAGAGTTGCGACGGTT
GTCCCATTCTCTCGGCGGCACAGCGCCAGACTTCGTGTGGGGAAGGGGTG
CTCTTTATCCACTCCCAGCTCCTTTATCTGCTGTTCGTACGAGAGGCGTT
CGTTTGTATGTGCCCACATGCGAACGGGCATCTTTATTTTCTTGTGTACG
GTCTGGTATTCTGGTATTCTTGTACACTGCTGTTATTTCTCAACAAATTT
TCTGAAATGCAAATCACGGCGAAGTACGGTACGGAGGATAAGGCGGTTTC
TTGTAGGGCCGGATTTTTTTTCACTTTTGATAGATTCCGATTTTTTTTTA
AATCAGGCTTCTTATAGGCTCGGAAACTTCTTATAGGCTCGGAAAACACC
TTTTTCCGCACAACATTTTCCGAACAAAATTTTTCAAACAGCTTCTAATC
GGATTTCAGTCGGAAAATCGGACATTTTCCGAACGCTGGCTCAGTTCGGA
AAATACGATCGGAAAATATATTTAAAAAAAAATGTGTGAAGTTATCTCTC
TCTTTGTATGTGTGGACAAAACAAAAGATATTATTCACAACAGAGCATCA
GAGGAAGGAGAGCTGCTGCTACAAGTACTACTTTCTGTGTTGTTGCAGCT
TCTGCTCCTGCTGCTGCTGCTGCTACTACTGCTTGCTGCTGTCCATACAT
GTGTCCACCATCTTTCTGTGTACGCTTGCCGTGTCATCATCCATTCCATC
GTGTTCATCAGCAACCAAAACCAACAGTATGTAGCAGCAGCAGCATCAGC
ACAGCAGCAGCAAGAGGAGGAGTATCAAAGCTTCCTCTGAGTGAGACCAC
AGTTTGCATCTTCGCTCGTAAATCCCCAATGAATGAAGCCACAGCGATGA
CAAATCCGTCTCCCGTGAGCTGTGCGTATGGCTCCCCTCGTGTGGTAATC
GTTTGGGCGAGGATCACACTGGCATGTTCGCAAAATGATCATCGCTCGTG
GCTGTGGCATGTTGTTGTGTCGTAAAAAAGAACCCGAGCTGTCATCTCCT
TTATCTACTGCTGTACAACTACTATACATACAGCAGTAGACCGGCTGACA
CATCTTTCTCAATTTGTTTCGCATGAGTTGGCCATGAGCAAACCTACGTT
GCGAATGTACGGACGTAACCCTAACACAAGCGATCACGACACGAGGGGGA
TCATATGCACAGCTCACGGAAGATGCCTTCGTCATTGCTGTGTCTTCGTT
CGTTCGAAAGTTACGAGCGGCGATCCAAACGGGTTTCAGCGCAAGAAACA
CCACCATGCGGTCCTTCGATGCAGATATACCGGTATACTCTGGAGCCGAC
TCTTCAACCACTTTCTTAAAAAAAGGATCACCGAAAATCCGAACACCTAT
TTACCTATAAGAACAGCGGATCGCCAACCGTTGGCCGGAAAAAGTTCGGT
CGGATTCTATCAAAAAATGAAAAAAAAATCCGGCCCTACAAGAAACCGCC
TAACACCCAACGGGCCATTTTCCACCGTCCGAGATACCCCGCAACAAAGA
TGTGTCTTTATGCCATTCTGGCATGCCGTCTAGCTTAGCTACCATGCTGG
TCTTCCCTTGAGGATTTATAACTACGTTGTTTGTGGAGAAGGAAAATGTT
GAAATCGTGGGGGTAAGATATGACGAGTAATTTCATCTGTCCTCATGATA
CTGCTGCTGCTCCTCTGTCCTTGATGTACTGCTGGAGCCCGAAATCACTG
CAGTTGGGTATTCTATCATACGAGTACCATGTATCTACTGTTGTACCATT
TGGCTTCTCTTCGACTTGCGCACGATTTTCTCCGCCGTCAAAGCGAGTTT
TGTCGCGCTTTTTTCTGCAGAGCACGCAACAGGTCCGTGGCCACACGGCC
ACACAAGAGTTGGGCTGTGTCGACGCCCGTAGCCTCTGTGCTCGACGCAC
AAAGTCGAACGCACTGGCTCTATTTCGCGGGAACGTGTTCTCAGGAAAAA
AAACACTGCTTGCTGTTAGGCAACCCCACCCCCCGGGGGTGCCCATAAAT
GCATACTGGTTATGCAAGCGCGTGCATACCGAATAACGCCTACAGAACCA
CCCACAACAAACCTGACAGCACGAAGAAAACAACAAAACACTCACAACAC
ACAAAACACACAACAGAAGACACAACAGAGGCACTGTCCTTAAAAGCAGA
ACTACTGCTGTACACACGACAGCAGTCCACAACACACACACGAGACACAC
ATCTACGCACACGCGCGCACATGAATAGGAATAGCCACACACAGAAAGCA
CAGCAGTGGCAGCAGACAGCAGTACCCCATACACACATGCATGCTTTTTC
GTCCAGGGCCAAGTTGTCTCGGGCTGCCTCGTTTTGACCACGGGCTGTGA
CTCTTTGCCCACTCTCGTCTTCTTCTTGATGATGCTGATGCTGAACACTG
CTGAACACTGCTACATTTGTTCTTGTTTAGTGCACAATGTGTGAATCAAC
ACAACAGCAGCAGCAGAGCGGTATGACGCACACACATGAAATCACACCTC
GAACGGACACACACGCACAGAGAGCAGTGATCGCGTGGTCGCACACAAAC
ATACCGCACCGCACACGCACAGCACAGCGACAAAAGGAGTGCCGCGTATA
CGATGATGTCGCACAAGGCACAGCGGCAGGAAGGAGGAGGAGCAGTAGTA
GGACACACACACGCGAGCATAGAGAGAAAAGGAGAGCATGGGTGCGCGTG
GCACGCGCTGGGTGCACTGCGTGTGTTTATTTTATTAATTGTGTGATTGC
ACGTATGTTCGCGTGGTGCTCTGCTGCTGCTGCTCTGTTGTTATTTCACA
CACATTCATAAAAAAACTCACTGAAGGTGGTTGCAGAGGAAAGTGGGTAG
AGAGTCACAGCCCGTGGTCACAAACGACGCACGAGACAACTTGCCAGGAC
GAAAAAAGCATGTTGTATGTGGGGGGTACTGCTGTTTACTGCTGCCACTG
CTGCTGTGCTATCTATGTACATGGCTGTTACTGTTCATGTGCGCGCGTGT
GCGTAGATGTGCGTGTCTCGCGAATGTTGTGGACTGCCGTGTGTACAGCA
GTAGTTCTGCTGTTGAGGACAACACTTGAGCTCTCTGTTGTGTGTCTTCT
ATTGTGTGTGTTGAGTGCGTTGTGTTTGTTTTCTTGTTTTCTTCGTGCTG
TCAGGTTTGTTGTGGGTGGTTCTGTAGGCGTTATTCGGTATGCACAAACG
CGCTTGCATACCCGGTATGCATTTAGGGGCACCCAACTCCCGGTGGCCGT
GCGGTGTGTGGTACCAATGATACAAGTGACAATGAACAAAGTGCTAGCAG
ATCAACGGCGGCATCGTACGCGTGTGTGCAACAAGTGGCGGTGTGTGTGC
ATACTTTTCTTGGCAGCAGTGGCAATAGCATCCTCTGCCCATGCTCGGGT
GGCGGTTCGGTATCCACGCTCTACAGCATGACTATACTGACCGAAATCAC
ACGCAGCACACCCCCGGGAGGGCCCGTACTGTTGTACCATTAAATCAGCC
TCATGAAACATTAGAAAATGCTTCGTATGGAGCATCGCATAAAAAAATGA
AAAGACGACAAAAACATGTTGCTGAAGAATATTTTACGTTGTTCTGCTGT
ATTTCACACACCCGAGCAGCGGAAAGCGGATAATGGCGAGTAAACACAAT
TCGATTCGAAAGTCGACGGCCAACCCTTCTAGCGATAAAAATTAAAGCAC
GCACCGAAAGGAAGGTGGAAAAAAAAACATTGAGCTGTGCTGTCACCTTC
CTCTCGTGTGTGCGGCCCCGGCTGATGCACCCACACATCCCGGAAGGTGT
AGACTGGCGTCCAGAATAGATAGGATGACAACACACATTGCATACTCAGG
GGTCGCGTGCTTGAAGGCAATGCAAAAAAAGAGGTGCTGAGTACTGCTAT
GATCATACAGGAAAGGAGACAGTTAGTACGAAAAGCTACCCAGCAACAAT
CGGCAAATAAAAAATAAAATGATGAACAAACACGGTAAGACAGCGCAAGA
AACGACTCTACATACAAGAAGAGCAGGACGTGTGGGTATCGCGTAATGTA
CGGCAGCACGCAGTAGTAGCCCACGGCAAACAGCAGTGTACGACGGGACC
CGGTGCCAACGGTACGGGCCAGGGTGAACGGGCTGGACGAAGACGAGGCA
TCTATCTGGAGAACTTGGAGCTCTTTGCAGTTTTTATTTCACGTGCCTGC
CCCGATTCCTAGCTCTTCTCATTCTGTTCTGGTTCGTGTATCGATTCTGG
ATGCATCGCACCTGAAGATCCAGCAAAAAAGTTAACCTTTGGGATACATG
CACATCATTTCGCACCCATGTTTCGCACCCAGTAAACAACAACGTTCAAC
TTGAAAATGCCAACGACTCCGTATGTTGTTTCGCGCAGGTGTTGAAGGCC
GTTGTCTACCCGATTTCCGGCCGGGTCTTCATGACCCACTGCCTGAAGAC
CAGCTGCGATGTCACCCTCGAAGTCATGATGAGGGGCTACCACGTCCTCG
GCGACTTCCTAGCGGAGGTGACATTAATTGGCCCTGACAGAAGCATCTCG
TGTACAATTGTCTTGGTGAAGACGGTTGTTGCTGCCTCGAGAAGCCGAGA
CCCATGCTCCTAATTAGTTTCCTCATTTATCGCGTACAATCTCTATTCCC
CGCTCCTAATCTAGTCTGCCCTTTTCATGTGTGCGCTTGCCCTGATTCTT
ACGCAGGTCGCGACACTGGTGCTGTTCAGCGCACCGACGCGGGCGACCCT
TTTCAATACGAGACGGTCGACTGCCTTGCCGCGCGGGAAGCCAGACAGTG
GAAGAAGCTCTAACGGAGGCTTCGCTTGCAGGACGGCCAGGGCTTTCCAG
GAAACGTATGTACGCAAGATTTTTGTTCTCAAAAAAGGGAAGAGATTGAA
GAAAAAGTCCGTTGTTAACTTGTGGTCGTTGGTGAATCATTGTATGATGC
TTTTGTGCTCTCATACACGCAGTATAGGCTCGACACAACTCTGCGAGTGT
GTGTGTGCGGCAGGCAGCACGCGGCAACGTTTTGCCCCGGACTTGCTGTC
TCGTCACTTTCGAACATGTCACCTCCTTGTTTCGGATATTTTTTTCTGCC
CATCCCGGGGCTGGATCAGACTTATGTACGGGAGGCTGGTATCGCCATGC
GTCACGGCCCGAAGTTCTGTTGCGTCATCCGCGCATGGTAACCAGAAATT
AAGATGGGACAAATCGACTGGCACTTAATGTCACACTTTTTCGTTCTCTT
GCGTCGCTTCTGCTCCACTGTGCGTTTTACGATAGTCTGTGGTACTCCGT
GTACGAATTCATGACAGGCCCACACAGTGTGGCCCACGACGTCGGGAGCC
TACATCCCTCACTGTATCCGAACAGCAACATCGTTCGTTTCGTGGCACCG
TACGCCAACGCTGAAGGTCAGTGAATCTTTTCCCGTTCGTTACATGCGCG
TGGTTCTTTGTTGCCCCCTTTGGGACGATACTATCTGTTTGAGTTCAACA
GACACCGCCGCCTTGTAATATTTTCAGCCGGTTTGGCTCTCCCACTTTGG
GGGAGAAGAGGGGGGAGGATGAACGAAAGTTGGTCGTCCTTTCATTGATA
CACAGCGTGTCCTTCAAACGGCCCTCAACCATGTGGAACTTTGAAAAACG
ATATACCCAAACCGTTAATACGGCCCGAGACTCACACCATGCGTTTCGTT
CCCGTCTTGATTGGCATGTCTTTTAACCCCTCCCCCCTGCTCGCTATCGC
GTCACATCGATTCGATCATGCGCGCGCTTTATTTTCACAGACGGCCGCGA
AGAAGACCGTGGTGCTAGCGCTACGGGGGGGGGGCGCAGGTGGCAGCGGC
AGCGGCAATGATTTCCGCGGATTGGTGGTGGAGAAACTGCTCCGTCTCGC
CGACGACGGCGGCGGCGACAACGGGTCGTGGACTCCTTCTTTCCTTGAAG
AGTTGGTTTGGCTCATGCCATCCCCATACTGGAGAAGTACAGGGGGCGGG
GGTGCAAGCGCTTGCGGGAGGAAACCCGTGCACTGTGGCGACGCCCCACC
GGACACCGTCTTTTCCCCGGCATTTTACTTGTCGCTCCTGTTCCTGAAGC
GTGACAAAGTCGTCAAAAATCGTTGGCAAGGAGTGCAAATCGTGCGTTAT
TGGTCCGTTCATCCCCGTGTTTTTTTCGTGGATTTTTCGTCTTTTTGTCA
TCCACTGCCAGTTGTGGCGTCCGTGAGACTCGACAAGGGGTTACAGCCTT
TTCGCCAAAGAAACACGTTTCGCTGTCGAGATGACCGAGGGAGGGCCCAT
GGGGGAAGGGGCTAGTGCCTTGACTATTGATATTTTTCCAAGCCACGGGT
TTCCTGGTGGGGTGAGGAAGGGCTCGTCGCCGTACGTGTCATGGGTTGAG
GCGTGTTTTGGGGAGTGTAATTGACTCGTACCAGTTATCCTGACATTGTA
TGGTATGGTACGCAGAAATTAAACTGTTTTTTCAATTCCATTTGATGGTG
CTTCCACTCATGCGCCCTTTTTCGAGGGCTCGTGAACGCCGCGTCGACAT
TAAGCGAAATAAAATGTTACTTTCGAGAAATAAATGCAAACGCAAGGTCA
CGATCTCGCCCTCGGCAAGCAACG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig136:323536..330559+ >mRNA_P-littoralis_Contig136.59.1 ID=mRNA_P-littoralis_Contig136.59.1|Name=mRNA_P-littoralis_Contig136.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig136:323536..330559+ (Pylaiella littoralis U1_48) ATGTGGACACGCGACACCTTCTCACGGCCGTGTTTCAACGGAAACGTGTT GAAGGCCGTTGTCTACCCGATTTCCGGCCGGGTCTTCATGACCCACTGCC TGAAGACCAGCTGCGATGTCACCCTCGAAGTCATGATGAGGGGCTACCAC GTCCTCGGCGACTTCCTAGCGGAGGTCGCGACACTGGTGCTGTTCAGCGC ACCGACGCGGGCGACCCTTTTCAATACGAGACGGTCGACTGCCTTGCCGC GCGGGAAGCCAGACAGTGGAAGAAGCTCTAACGGAGGCTTCGCTTGCAGG ACGGCCAGGGCTTTCCAGGAAACTCTGTGGTACTCCGTGTACGAATTCAT GACAGGCCCACACAGTGTGGCCCACGACGTCGGGAGCCTACATCCCTCAC TGTATCCGAACAGCAACATCGTTCGTTTCGTGGCACCGTACGCCAACGCT GAAGACGGCCGCGAAGAAGACCGTGGTGCTAGCGCTACGGGGGGGGGGCG CAGGTGGCAGCGGCAGCGGCAATGA back to top
|