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Homology
BLAST of mRNA_P-littoralis_Contig136.37.1 vs. uniprot
Match: D7FN12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN12_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 2.730e-9 Identity = 87/250 (34.80%), Postives = 119/250 (47.60%), Query Frame = 3
Query: 1827 GGNNVGFASGYA----GSRSRVTMRVPQLPQSFSGPSEEGNQKERAEQSKGHQQGKPTILDALDDMCVSDETHHGLDA-HSSATNHSNKSGFGEETKAISGGIYGNGRIDGSNGCDEGHTEDNIENPRKACGVTTPISGDD-------GSLAAMETAK-----YSGQSGAYGDSD----ERGVG-IVKRVGAFLETLESA-TCRKTMVTLEVGMGSAVQV-MNERKFLDLHDTKEGIGELLVALGATASA 2504
GGN+ G SG+A GS R P F+G + EG E+ + H Q T+L A ++ VSD +A H S T + +G +A GIYG +G+ +GH + G+ +PI+ + S AA ET + S YG S RG ++ R G FLE LE + + ++ LEV S V+V M ERKFL+LH+TKEG+GELL ALGAT SA
Sbjct: 171 GGNDAGVGSGFARLDIGSPPTAAKRFSVPPLVFAGLAGEGKGVEKWV-GQPHGQHALTLLHAPEENDVSDAGSGSFEALHPSLTTPNIHTG---RERAAGSGIYGR-FSEGTRYDHDGH----VAGTAADSGMGSPIASAETARNLVSASGAATETPGGAEKLFRDYSNTYGSSACGIAGRGAKELILRAGTFLERLEKVGSGEEGLIMLEVDGCSVVKVVMEERKFLELHETKEGVGELLTALGATCSA 411
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3620 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 2247 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789628.5796375-UTR-P-littoralis_Contig136:196570..197680 | 1680789628.5796375-UTR-P-littoralis_Contig136:196570..197680 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig136 196571..197680 - |
| 1680789628.623339-UTR-P-littoralis_Contig136:201171..201356 | 1680789628.623339-UTR-P-littoralis_Contig136:201171..201356 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig136 201172..201356 - |
| 1680789628.6348667-UTR-P-littoralis_Contig136:201888..201966 | 1680789628.6348667-UTR-P-littoralis_Contig136:201888..201966 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig136 201889..201966 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789628.600482-CDS-P-littoralis_Contig136:197680..197734 | 1680789628.600482-CDS-P-littoralis_Contig136:197680..197734 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig136 197681..197734 - |
| 1680789628.6129901-CDS-P-littoralis_Contig136:198978..201171 | 1680789628.6129901-CDS-P-littoralis_Contig136:198978..201171 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig136 198979..201171 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig136.37.1 >prot_P-littoralis_Contig136.37.1 ID=prot_P-littoralis_Contig136.37.1|Name=mRNA_P-littoralis_Contig136.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=749bp
MEETAQQPQFGHPAEAVDVSYQKPAGAVQQETVGFICSSGQEREPDVLLS PVKPSQFHMSENKAITGGPETPESDSGRNGEHNDSRAAPTLTLQDTDHKG DIGSGSGNHASVPRNSDVEIDGLFDGLKIESGGDLVKAKNEKQESEGRET LRASTQGLKNRVELESFKRLDAESRTETLEVEVQVLADRWSSEIAAREAA EANAKRYMDLFTEARAAWQHTQGIVENKEKELIAAEHKINRKTGDWGSMQ SRLEEAKKTKELHRQHSLVLKQALEGSLSKESTFSPISSAETIVALPSPE NEDKALPENIDACGSGGKAKSPSAPSSKVAAGPEAGGIRYVPSSQPKLEE EREAAAEARLQMAITIAAARSKTVTATSLVQKKAQLKHVQQQGPMQQGNY AWPSSPRRQRAPTSKGTPLSPMTVSCVPPTTTSTALQHHAHQQHARRQQD GNQARLCRELEKPVPAAQKGDDAQLPLDDPYTPGTTPTAFTSFPQPLPCR SRSVSATKQPEVGEGNGRSNNGGNNVGFASGYAGSRSRVTMRVPQLPQSF SGPSEEGNQKERAEQSKGHQQGKPTILDALDDMCVSDETHHGLDAHSSAT NHSNKSGFGEETKAISGGIYGNGRIDGSNGCDEGHTEDNIENPRKACGVT TPISGDDGSLAAMETAKYSGQSGAYGDSDERGVGIVKRVGAFLETLESAT CRKTMVTLEVGMGSAVQVMNERKFLDLHDTKEGIGELLVALGATASAF* back to topmRNA from alignment at P-littoralis_Contig136:196571..201966- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig136.37.1 ID=mRNA_P-littoralis_Contig136.37.1|Name=mRNA_P-littoralis_Contig136.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5396bp|location=Sequence derived from alignment at P-littoralis_Contig136:196571..201966- (Pylaiella littoralis U1_48) CACGCAGTAGTTAGCGGAAAAGAGACCAGGAGATTCAGGAGGAGGGTCAA
TAGCGTTCGCTCGAGGAGCACTTGAAAGGTGAGGGCGGGTACCTCGTTGG
TGTCGGCTGGTCTCCATGACATAAACTAAACGGGTGAGCTACAGCATGTT
ACTGCACATTGCGCCTCGGTGCGTTGTCCTGGGGCTGGCTTCGTGAATCT
ATTCATTTCTCTGGTACTTCCATCCAGCACTCACTTCTCGATCAGCAGCA
TCCACAACAACCCTTGCAAAACACAAACGGCGCTCTGACAACACCTCGCA
AAAATCCCGCGACCAGAGAGAGGTCGGGCGGCGGCGAATTCCCCCGCTAC
ACTATTTTTCAGGTAGACTCGGTAGCGGGTCGTAGTCTTGGGGTGTCTTG
ATTCCATCTTGTAAAGACTGCTGTGCCCTGTCTAGAACACAATCAACAAG
CTGCGTGCCGCATGGTGTCCACTACGCTACTCTACTGCTTCAGATAGTGG
CACCCGTAAGCCTCGAGATCTTGCTGGTGTGCGCTTCGCCTTTCCTGTCT
GCGTTTTTGCACAACTGGTTCATAATATGCATTTTGCTCGAAATCCTGTC
CAATTCTCAGGGAAGCCGCTGACGCCCCGAGCTTCCCACTGCAGTCACGA
CGTGGGCGACAAAAACACGGGGATCCTCCGTCTTTGCTGTGTCCTATAAC
AGTAGACGCGCACAACGCGGAGCAAGCCGTGCTACTTGTCATCAAACCAA
CTCGACAAGGAAGCTACATATAGCGTGAGTCGTTGGTCTCAAAGCATGGA
GGAAACGGCACAGCAACCACAATTTGGTCATCCTGCCGAAGCGGTAGATG
TGTCGTACCAAAAGCCAGCTGGAGCCGTCCAGCAGGAAACGGTCGGCTTT
ATTTGCAGTAGTGGCCAAGAAAGAGAGCCCGATGTATTGCTCTCGCCCGT
GAAGCCGTCACAGTTCCACATGTCGGAAAACAAGGCGATCACCGGTGGTC
CCGAAACGCCCGAAAGCGATAGCGGCAGGAATGGTGAGCACAACGATAGC
CGCGCCGCCCCCACTTTGACTCTGCAAGACACTGATCACAAAGGGGATAT
CGGCAGCGGCAGTGGCAACCACGCTTCTGTTCCCCGAAACTCAGATGTCG
AAATCGATGGCCTCTTCGACGGGCTAAAAATTGAATCGGGAGGTGACCTG
GTAAAAGCCAAAAACGAAAAGCAGGAGTCCGAGGGCCGTGAAACTCTGCG
AGCTAGCACCCAGGGCCTCAAAAATCGTGTCGAGCTCGAGAGTTTCAAGC
GCTTAGATGCGGAGTCCCGAACCGAGACCCTCGAAGTCGAGGTACAGGTC
CTGGCGGATCGCTGGAGCTCGGAGATCGCCGCTCGCGAAGCCGCGGAGGC
CAACGCGAAGCGCTACATGGACTTGTTCACCGAAGCCAGGGCGGCTTGGC
AGCACACTCAGGGCATCGTAGAGAACAAGGAAAAGGAGCTCATCGCCGCG
GAACACAAGATCAATAGAAAGACCGGTGACTGGGGTTCTATGCAAAGCCG
TCTGGAGGAGGCGAAGAAGACCAAGGAGCTACACCGGCAGCATTCGCTTG
TGCTAAAGCAGGCTTTGGAAGGGTCTCTTTCCAAAGAGAGCACGTTCTCC
CCCATTTCTTCCGCCGAAACCATCGTCGCACTGCCCTCTCCTGAGAATGA
GGACAAAGCTCTTCCAGAAAACATCGACGCGTGTGGGAGCGGTGGAAAGG
CCAAAAGTCCATCCGCGCCCTCCAGCAAGGTTGCTGCGGGCCCTGAGGCA
GGGGGGATTAGGTATGTACCGTCGTCCCAGCCGAAACTTGAGGAGGAGCG
AGAGGCGGCGGCAGAGGCGCGGTTGCAGATGGCGATTACGATTGCGGCAG
CGAGGTCCAAAACGGTAACAGCTACATCCCTCGTGCAGAAGAAAGCCCAG
TTGAAGCATGTCCAACAGCAGGGACCAATGCAGCAGGGCAATTACGCGTG
GCCCTCATCGCCTCGCCGCCAGCGGGCACCCACCTCCAAGGGCACGCCAC
TCTCGCCTATGACCGTGTCGTGCGTCCCCCCCACCACTACATCGACAGCC
CTCCAGCACCATGCCCATCAGCAGCATGCACGGCGGCAGCAGGACGGCAA
TCAGGCAAGACTCTGTCGGGAGCTGGAGAAACCCGTGCCCGCCGCCCAAA
AAGGAGATGATGCACAGCTCCCCCTTGATGATCCGTATACCCCTGGGACC
ACCCCCACGGCCTTCACCTCCTTTCCGCAGCCTCTCCCGTGTCGCTCCCG
CAGTGTCTCGGCGACTAAACAGCCTGAAGTAGGTGAAGGTAACGGAAGGA
GCAACAACGGAGGAAACAATGTTGGCTTTGCTTCCGGCTATGCCGGATCG
CGGTCAAGGGTGACGATGCGCGTACCGCAACTGCCCCAGAGCTTCTCAGG
CCCATCCGAGGAGGGCAATCAGAAGGAGAGGGCTGAGCAATCGAAGGGAC
ATCAGCAAGGAAAGCCTACTATATTGGACGCGCTGGATGACATGTGTGTC
TCCGATGAAACCCACCACGGCCTCGACGCTCACTCTTCAGCGACCAACCA
CAGCAACAAAAGCGGTTTTGGTGAGGAGACAAAAGCGATCTCGGGCGGGA
TTTATGGTAACGGCCGTATTGACGGTAGCAACGGTTGCGACGAGGGTCAC
ACGGAGGACAACATCGAAAACCCCAGGAAGGCGTGCGGAGTGACGACGCC
CATCAGCGGTGACGATGGGTCCCTGGCTGCCATGGAGACGGCAAAATACT
CGGGACAAAGCGGTGCTTACGGCGACAGCGATGAGAGGGGGGTTGGTATC
GTCAAGCGGGTGGGCGCGTTTCTTGAAACGTTGGAGAGCGCTACGTGCAG
GAAGACCATGGTTACGCTCGAGGTTGGCATGGGGTCAGCGGTGCAGGTCA
TGAACGAGAGGAAATTTCTTGATCTCCATGACACCAAGGTAGGAACAGCA
AAGGGATGTGTACCTGATACCTAGTATGTGCACGGTGTCCCCTTTTAATG
AAAACTGCGTTCGAACGTTGGGGTATCTGTAGATCTGGTACCAAACGAAC
GGCATGAACGTACCATACAAGCCAAAAAGCACCTTAGTTCCTTCGAAATT
TCTGTGAAAGTAAGAGTTCATGGCGGCGGTCAAATGTCAGCAATAGAACA
GCCTGCAGGTCTAACGGGACATAAATACTCGCAGATCAGAGCATCGGTTC
TAAAATTTATGTAATGCAGGCATTGCAGGTAGTTGCGAAGGTGATTTGGC
CGCTCTTGGTCCAACTGGAATTCCAAGGTCCCTAGGTGCCCAGGTGAAAA
ACAGTTCCGAGTGTTATTAAAGCACCGAACCTCGGAGACATATATTTTGG
ACGGGAAGCATTACATTCAAGCAAGCCGCTACCAAATTGGACAAATGAGA
AAAGTTAATCAGAACACATCTTCATTGCCGGTATCGCCGGCGCCGCGTTA
GTACTTGAGTGTTACAACTGTCGTATTGTGGCGATTCTGACCCCTACTCG
CCCACCAACACACTTTTGCGGTAGAGGTCAGCACCACGGTGTCTTCGTAC
AAATGAATTTCGAAGGAAAGTTGGCGACATTCCGTCTACGCGCGAGCACC
TCCTGACTTCCCCAGACAGATTCCCCCATGTCTTCCAAGCTCGAGCTGTG
TCGGAATGTTTGCGGTGACACAACGATATTCCTGCTCGGTGATCCAAAAA
GTGTATTCTCGAAAGCTGTAGAGGTGTTTTCAAGAAGTCACCGTGTCCAC
GCTAGGAAGCTCAAGCATTTGAGTGTGAAAGGCTACCAAACACATCGCCG
TGTTCTCCTCTCCAGTTTATATCGCATATCACAGCAAACATGTACGAAGT
AGGTGTTACCATCTGCACAATTAGTGGTCGAGGGTCAACGCTCCATCACC
CCCCCAAGCACTACATGTATCGTAGCACTGAGGAATTCTTCACCGCCGCA
CGTAATTTGATGCTTCTTGTTTGAGGTGTCAGCATCGCGAGCGTATTGTT
TTCCAATTGAATTGTTCATCAACTTATGGTTGTTTGAACGCTACAAGATT
TTCTATTTCATGTGTCATTCTACCACTGCAGTCGACACGACATGAAGTTC
GTCGGACTACTTCGAAGTACAGCAGTATAGCTTGTCAAGGACTGACTGTC
TCCATGGAATTTTCTTCCTTTTCTTCGTGCAGGAAGGCATTGGCGAACTT
CTCGTGGCTTTAGGCGCTACGGCATCCGCATTTTGAAGTGATGGTGCAGT
TCACTCAAGCTCACTATGAATTATGGCCACGGTGGATATCCACGGAAGAG
AAGGAACATGGGCAGCATCTCTTACAGGAAAACGTTGCCCTTGGTATGTA
TGACCCTACTCAGGCTCAAAAATGCAACTTGTTATTTTTTCGTACTGGCG
ACGGAAACGCAACTGGAGGAATGCTGACCGCATTTGTTCTGTTAGCAGCC
CTTCCGCGTGTTCGGGTTCTTACGTGACAGCCTGTGTATAGTAGCCGTGC
GTTATCGCTAGCTTCGCCGGCCCGAGACAATGGGGTGCATGAAAGTGTGC
CGAACCCGAGTGATGACCGGTTGGGCCGCAGTACGAATAGAGTAGGGGGT
GTAGGGGGGGGTGAATTGAAACGGAAAAGTATGTCGCCGAGTGCAAACAC
TACATTTGATCTAATCCGTTCGATGGTGAAAACAGACAGGGCCGAAATCG
ATGAAATATGGGTCTACGATATACTTTGAAGTCTATACGTAAGCAGGGAT
CACGTCAAGTCGGAGTGCGCGGTTGTTACCCATTGTAGGTGAGATACGGT
TGGTGTGGAGGAAAGCGAAGAAACCGTGAGAATTCGAGTGGAAGAACTAT
TGGTTGGGGTTGGGCGTTGATGGAATGTAAAACTATGTACGAATGAAATG
TAAAGGGAAATTATGTGAATGCTTTGAAATGCAATGAAATGAAAGGAAAG
GAAAGGAAATGGGATGAAATGGAATGAAATGGAATGAGATGGAATGAAAT
GAAACGGAAACGGAACGCAGCGTGTTCAGTAAAATACTGATGGTGCAAGG
TCCTGTCAAATCGAAAATGGGTATTTTTGATTCGTGTGTTGGGTCAGCAC
TGGGGACGATACGTCAACCGCAATCAACCGCAAGGATGCCAGTATACTGC
GACGACGGCATGGTCACTGGGGTATTGCAAACGAGGGGGGCGAGTCGGAA
ATAATTCAAACGCAGCCGGGCACAGCCAATGATAAGATTGGCGAAGGTGG
TGGTTGGAGCGGCGTTTAGAATTTTAACCTCCCAAAGCGCGCATGGTTTC
CCCAGCGCAACTTTGAATATCGCAGAATCGATAGGGCCGAGATGCC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig136:196571..201966- >mRNA_P-littoralis_Contig136.37.1 ID=mRNA_P-littoralis_Contig136.37.1|Name=mRNA_P-littoralis_Contig136.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2247bp|location=Sequence derived from alignment at P-littoralis_Contig136:196571..201966- (Pylaiella littoralis U1_48) ATGGAGGAAACGGCACAGCAACCACAATTTGGTCATCCTGCCGAAGCGGT AGATGTGTCGTACCAAAAGCCAGCTGGAGCCGTCCAGCAGGAAACGGTCG GCTTTATTTGCAGTAGTGGCCAAGAAAGAGAGCCCGATGTATTGCTCTCG CCCGTGAAGCCGTCACAGTTCCACATGTCGGAAAACAAGGCGATCACCGG TGGTCCCGAAACGCCCGAAAGCGATAGCGGCAGGAATGGTGAGCACAACG ATAGCCGCGCCGCCCCCACTTTGACTCTGCAAGACACTGATCACAAAGGG GATATCGGCAGCGGCAGTGGCAACCACGCTTCTGTTCCCCGAAACTCAGA TGTCGAAATCGATGGCCTCTTCGACGGGCTAAAAATTGAATCGGGAGGTG ACCTGGTAAAAGCCAAAAACGAAAAGCAGGAGTCCGAGGGCCGTGAAACT CTGCGAGCTAGCACCCAGGGCCTCAAAAATCGTGTCGAGCTCGAGAGTTT CAAGCGCTTAGATGCGGAGTCCCGAACCGAGACCCTCGAAGTCGAGGTAC AGGTCCTGGCGGATCGCTGGAGCTCGGAGATCGCCGCTCGCGAAGCCGCG GAGGCCAACGCGAAGCGCTACATGGACTTGTTCACCGAAGCCAGGGCGGC TTGGCAGCACACTCAGGGCATCGTAGAGAACAAGGAAAAGGAGCTCATCG CCGCGGAACACAAGATCAATAGAAAGACCGGTGACTGGGGTTCTATGCAA AGCCGTCTGGAGGAGGCGAAGAAGACCAAGGAGCTACACCGGCAGCATTC GCTTGTGCTAAAGCAGGCTTTGGAAGGGTCTCTTTCCAAAGAGAGCACGT TCTCCCCCATTTCTTCCGCCGAAACCATCGTCGCACTGCCCTCTCCTGAG AATGAGGACAAAGCTCTTCCAGAAAACATCGACGCGTGTGGGAGCGGTGG AAAGGCCAAAAGTCCATCCGCGCCCTCCAGCAAGGTTGCTGCGGGCCCTG AGGCAGGGGGGATTAGGTATGTACCGTCGTCCCAGCCGAAACTTGAGGAG GAGCGAGAGGCGGCGGCAGAGGCGCGGTTGCAGATGGCGATTACGATTGC GGCAGCGAGGTCCAAAACGGTAACAGCTACATCCCTCGTGCAGAAGAAAG CCCAGTTGAAGCATGTCCAACAGCAGGGACCAATGCAGCAGGGCAATTAC GCGTGGCCCTCATCGCCTCGCCGCCAGCGGGCACCCACCTCCAAGGGCAC GCCACTCTCGCCTATGACCGTGTCGTGCGTCCCCCCCACCACTACATCGA CAGCCCTCCAGCACCATGCCCATCAGCAGCATGCACGGCGGCAGCAGGAC GGCAATCAGGCAAGACTCTGTCGGGAGCTGGAGAAACCCGTGCCCGCCGC CCAAAAAGGAGATGATGCACAGCTCCCCCTTGATGATCCGTATACCCCTG GGACCACCCCCACGGCCTTCACCTCCTTTCCGCAGCCTCTCCCGTGTCGC TCCCGCAGTGTCTCGGCGACTAAACAGCCTGAAGTAGGTGAAGGTAACGG AAGGAGCAACAACGGAGGAAACAATGTTGGCTTTGCTTCCGGCTATGCCG GATCGCGGTCAAGGGTGACGATGCGCGTACCGCAACTGCCCCAGAGCTTC TCAGGCCCATCCGAGGAGGGCAATCAGAAGGAGAGGGCTGAGCAATCGAA GGGACATCAGCAAGGAAAGCCTACTATATTGGACGCGCTGGATGACATGT GTGTCTCCGATGAAACCCACCACGGCCTCGACGCTCACTCTTCAGCGACC AACCACAGCAACAAAAGCGGTTTTGGTGAGGAGACAAAAGCGATCTCGGG CGGGATTTATGGTAACGGCCGTATTGACGGTAGCAACGGTTGCGACGAGG GTCACACGGAGGACAACATCGAAAACCCCAGGAAGGCGTGCGGAGTGACG ACGCCCATCAGCGGTGACGATGGGTCCCTGGCTGCCATGGAGACGGCAAA ATACTCGGGACAAAGCGGTGCTTACGGCGACAGCGATGAGAGGGGGGTTG GTATCGTCAAGCGGGTGGGCGCGTTTCTTGAAACGTTGGAGAGCGCTACG TGCAGGAAGACCATGGTTACGCTCGAGGTTGGCATGGGGTCAGCGGTGCA GGTCATGAACGAGAGGAAATTTCTTGATCTCCATGACACCAAGGAAGGCA TTGGCGAACTTCTCGTGGCTTTAGGCGCTACGGCATCCGCATTTTGA back to top
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