mRNA_P-littoralis_Contig1359.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1359.2.1
Unique NamemRNA_P-littoralis_Contig1359.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1359.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1359contigP-littoralis_Contig1359:13414..14107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FH79
PFAMsFn3-like,Glyco_hydro_3,Glyco_hydro_3_C,Polysacc_lyase,WSC
Model size249
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.95e-07
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC3.2.1.37
Descriptionprotein xylosyltransferase activity
Cds size246
COG categoryU
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789626.3066044-CDS-P-littoralis_Contig1359:13413..135721680789626.3066044-CDS-P-littoralis_Contig1359:13413..13572Pylaiella littoralis U1_48CDSP-littoralis_Contig1359 13414..13572 +
1680789626.319608-CDS-P-littoralis_Contig1359:14019..141061680789626.319608-CDS-P-littoralis_Contig1359:14019..14106Pylaiella littoralis U1_48CDSP-littoralis_Contig1359 14020..14106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1359.2.1prot_P-littoralis_Contig1359.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1359 13414..14106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1359.2.1

>prot_P-littoralis_Contig1359.2.1 ID=prot_P-littoralis_Contig1359.2.1|Name=mRNA_P-littoralis_Contig1359.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
CYCVIDPDLESINKYSDELSAADHCLMACAGDVEEVCGDSYEMSVYEIIT
EPEGEYTSLGCFPDPRDGSKAMEIMMTAPAMS
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mRNA from alignment at P-littoralis_Contig1359:13414..14107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1359.2.1 ID=mRNA_P-littoralis_Contig1359.2.1|Name=mRNA_P-littoralis_Contig1359.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=694bp|location=Sequence derived from alignment at P-littoralis_Contig1359:13414..14107+ (Pylaiella littoralis U1_48)
TGTTACTGCGTGATCGACCCGGATCTCGAGAGCATCAACAAGTACAGCGA
CGAGTTGTCTGCTGCGGATCACTGCCTCATGGCGTGTGCGGGTGATGTCG
AAGAGGTGTGCGGCGATTCTTACGAGATGAGTGTCTACGAGATCATCACC
GAGCCTGAGGTAAGATGATAAGAGAACGTCTTTAATAAGCGGTCCACGAA
GACAATCCGTGCAGATTCCCTCGGAAAACAACCGCCGAAAGCTCTTGGGC
GAATAAAGCACTAGCAAATTCGGAGTATCTAGCTTGCGTGTGACCTGCAC
GGCGGGGTGGTGGGATTGGATCAGAGAAGGATGACAAACAATTACACAAC
GTTGGGCTGCAGTTGTTCCTCTCTATCCCGTCTTTTGACCTGTGTGCCTA
CATACTGCATGTAACCACGGTCGACATTTTGTTGTAGGAATATGCTCTGT
AGATCAACGAACACGTTTGTGGAGCCGGAGGCACCAAGCGGTTTTCCCCA
CGTCAATTTTTTTCCCCGTACTGACTCCTCCCCCCACATTCGTTCCTCTT
CCGCTTTTGTACATCACTTAATACCTTCCACCTGTGTCTTTCCACATTTG
TAACAGGGCGAGTACACCTCTCTGGGCTGCTTCCCCGACCCTAGGGACGG
GTCTAAAGCGATGGAAATCATGATGACAGCCCCGGCAATGTCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1359:13414..14107+

>mRNA_P-littoralis_Contig1359.2.1 ID=mRNA_P-littoralis_Contig1359.2.1|Name=mRNA_P-littoralis_Contig1359.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1359:13414..14107+ (Pylaiella littoralis U1_48)
TGTTACTGCGTGATCGACCCGGATCTCGAGAGCATCAACAAGTACAGCGA
CGAGTTGTCTGCTGCGGATCACTGCCTCATGGCGTGTGCGGGTGATGTCG
AAGAGGTGTGCGGCGATTCTTACGAGATGAGTGTCTACGAGATCATCACC
GAGCCTGAGGGCGAGTACACCTCTCTGGGCTGCTTCCCCGACCCTAGGGA
CGGGTCTAAAGCGATGGAAATCATGATGACAGCCCCGGCAATGTCT
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