mRNA_P-littoralis_Contig1354.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1354.12.1
Unique NamemRNA_P-littoralis_Contig1354.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1354.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1354contigP-littoralis_Contig1354:27942..28357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size416
Hectar predicted targeting categorymitochondrion
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.7056599-UTR-P-littoralis_Contig1354:27941..279911680789624.7056599-UTR-P-littoralis_Contig1354:27941..27991Pylaiella littoralis U1_48UTRP-littoralis_Contig1354 27942..27991 +
1680789624.7306058-UTR-P-littoralis_Contig1354:28312..283571680789624.7306058-UTR-P-littoralis_Contig1354:28312..28357Pylaiella littoralis U1_48UTRP-littoralis_Contig1354 28313..28357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.7202978-CDS-P-littoralis_Contig1354:27991..283121680789624.7202978-CDS-P-littoralis_Contig1354:27991..28312Pylaiella littoralis U1_48CDSP-littoralis_Contig1354 27992..28312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1354.12.1prot_P-littoralis_Contig1354.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1354 27992..28312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1354.12.1

>prot_P-littoralis_Contig1354.12.1 ID=prot_P-littoralis_Contig1354.12.1|Name=mRNA_P-littoralis_Contig1354.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MYCAAVVQQCKSFRARFFRFVLAVAFGSSRSIRRVHSFFALCGAKDSSPA
DMLYGWNETVQLSFLRSVSVSVLCWRSVTVVFPFLCFWCAGQGTTDVLRR
CSASGV*
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mRNA from alignment at P-littoralis_Contig1354:27942..28357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1354.12.1 ID=mRNA_P-littoralis_Contig1354.12.1|Name=mRNA_P-littoralis_Contig1354.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=416bp|location=Sequence derived from alignment at P-littoralis_Contig1354:27942..28357+ (Pylaiella littoralis U1_48)
GTGTTCCATATTTTTATGCGCCGCGTTGTGCAACGGACAGGGCATGTCGG
ATGTACTGCGCCGCTGTAGTGCAACAGTGCAAATCATTCCGTGCTCGCTT
TTTTCGTTTTGTGCTGGCGGTGGCGTTTGGTTCATCCCGAAGTATTCGTA
GGGTTCATTCATTTTTTGCGCTGTGTGGTGCGAAGGACAGTAGCCCAGCG
GATATGCTGTACGGCTGGAATGAAACAGTGCAATTGTCCTTCCTGCGCTC
CGTTTCTGTGTCCGTCTTGTGTTGGCGGTCGGTTACGGTGGTGTTTCCTT
TTTTGTGTTTTTGGTGCGCAGGACAGGGCACGACGGATGTACTGCGCCGC
TGTAGTGCGTCTGGAGTGTAAGGGGTGCACTCATTCTTCTGTCTTCCTTT
GTTTCGCCTTGTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1354:27942..28357+

>mRNA_P-littoralis_Contig1354.12.1 ID=mRNA_P-littoralis_Contig1354.12.1|Name=mRNA_P-littoralis_Contig1354.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1354:27942..28357+ (Pylaiella littoralis U1_48)
ATGTACTGCGCCGCTGTAGTGCAACAGTGCAAATCATTCCGTGCTCGCTT
TTTTCGTTTTGTGCTGGCGGTGGCGTTTGGTTCATCCCGAAGTATTCGTA
GGGTTCATTCATTTTTTGCGCTGTGTGGTGCGAAGGACAGTAGCCCAGCG
GATATGCTGTACGGCTGGAATGAAACAGTGCAATTGTCCTTCCTGCGCTC
CGTTTCTGTGTCCGTCTTGTGTTGGCGGTCGGTTACGGTGGTGTTTCCTT
TTTTGTGTTTTTGGTGCGCAGGACAGGGCACGACGGATGTACTGCGCCGC
TGTAGTGCGTCTGGAGTGTAA
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