mRNA_P-littoralis_Contig1350.3.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: D8LP41_ECTSI (Mannuronan C-5-epimerase (Partial) (Fragment) n=2 Tax=root TaxID=1 RepID=D8LP41_ECTSI) HSP 1 Score: 289 bits (740), Expect = 6.030e-88 Identity = 179/288 (62.15%), Postives = 217/288 (75.35%), Query Frame = 3
Query: 534 LGFEASESWGISWKLRGLCDDVSNLGAYEEIGVYGDLTGSDTHHLYYGHYSFRAIRVLITGNRFHDNVQYCCDPHHASSNLTITHNEMFNCGNHGLIISKYYDNTVIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFLESSRGVVYNNTVRNNVHGIRLSVGSRDAVVAGNTFEDNTGFDVYTYGGTDPVVEAESSNITGSIFFDNVFSGNAGGSRLDDSVDTQFVSNSVGDWERVELRGSDNLLIVGNVFPASVKYVFSDSCVNTASDVGFAEVCDNA 1397
LG+E +ESWGISWKLRG+C+D SNL YE +GVYG+L GS+ H LYYGHY +R L++ N ++N Y DPH S N+TI+HN+++ NHG+I SKY N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAFLESS G+VYNNTVR NVHGIR SVGSR VVA NTFE N+G+D+Y Y G+D VVE +S N TG++ + N+FSGN GG+RLDDS+DTQ + NSV DW +E+ S N L+ GN FP + Y S SC+N+ASDV F EVC +A
Sbjct: 198 LGYEEAESWGISWKLRGVCNDKSNLDMYEGVGVYGNLLGSEVHDLYYGHYGYRQSFALLSRNSVYNNEVYGFDPHDDSVNITISHNDVYFNFNHGVIWSKYCHNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIAFLESSGGLVYNNTVRENVHGIRFSVGSRQNVVAENTFEANSGYDLYQYAGSDEVVEVDSGNPTGNVIYANLFSGNVGGARLDDSIDTQLIINSVEDWASIEMVDSMNTLVQGNSFPDDMMYTSSGSCINSASDVSFGEVCTDA 485
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: A0A6H5KU33_9PHAE (MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU33_9PHAE) HSP 1 Score: 287 bits (734), Expect = 2.390e-84 Identity = 180/288 (62.50%), Postives = 212/288 (73.61%), Query Frame = 3
Query: 534 LGFEASESWGISWKLRGLCDDVSNLGAYEEIGVYGDLTGSDTHHLYYGHYSFRAIRVLITGNRFHDNVQYCCDPHHASSNLTITHNEMFNCGNHGLIISKYYDNTVIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFLESSRGVVYNNTVRNNVHGIRLSVGSRDAVVAGNTFEDNTGFDVYTYGGTDPVVEAESSNITGSIFFDNVFSGNAGGSRLDDSVDTQFVSNSVGDWERVELRGSDNLLIVGNVFPASVKYVFSDSCVNTASDVGFAEVCDNA 1397
LG+E ESWGISWKLRG+C+D SNL YE +GVYG+L SD H +YYGHY +R L++GN ++N Y DPH S N+TI+HNE++ NHG+I SKY N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAFLESS G+VYNNTVR NVHGIR SVGSR VVA NTFE+NTG D+Y Y G D VVE +S N T ++ F N FSGN GG+RLDDSV TQ V+N+V DW ++ S N LI GN FP + Y S SC+N+ASDV F ++C NA
Sbjct: 493 LGYEEVESWGISWKLRGVCNDKSNLDLYEGVGVYGNLLDSDVHDMYYGHYGYRQSFALLSGNSVYNNEVYGFDPHDDSVNITISHNEVYFNFNHGVIWSKYCHNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIAFLESSGGLVYNNTVRENVHGIRFSVGSRQNVVADNTFEENTGHDLYQYAGNDAVVEVDSGNPTSNVIFANQFSGNTGGARLDDSVGTQLVANTVEDWASFDMGDSVNTLIEGNTFPVDMMYTSSGSCINSASDVTFGDICTNA 780
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: O39824_9PHYC (GP-1 (Fragment) n=4 Tax=Phaeovirus TaxID=181085 RepID=O39824_9PHYC) HSP 1 Score: 217 bits (552), Expect = 1.580e-64 Identity = 105/152 (69.08%), Postives = 127/152 (83.55%), Query Frame = 1
Query: 85 RVYLESADGSRVGCVSPTDIYKSLGVASPLYPLETPGEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEILISG 540
R+YLES DGSR GC SPT IY++LG ASPL+PLET GEWML+E L VLDGI LN+YGT +GGD D++KLRSDS V IRAHGGSLDL++T+VTSWDS+K DVD+++ DGR+++SAISEVV D +ETC G AKN+MGEAR+DIE CEI G
Sbjct: 1 RIYLESVDGSRGGCASPTTIYEALGDASPLFPLETAGEWMLSESLHVLDGITLNLYGTDVGGDVDYIKLRSDSEMTVSIRAHGGSLDLLNTKVTSWDSSKGDVDTDWSDGRSFLSAISEVVLDTSETCVGSAKNDMGEARMDIENCEIAFLG 152
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 181 bits (460), Expect = 1.620e-49 Identity = 95/185 (51.35%), Postives = 129/185 (69.73%), Query Frame = 1
Query: 4 ASANTPIPKPVCDSSKTVSVRYSSTSERVYLESADG-SRVGCVSPTDIYKSLGVASPLYPLETP---------GEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEI 528
AS N PI KP CDS VS+RY+S+++R+YLESADG +R GCV+ I+++ +PLY ++ G W+L E+L+V DGI L VYGTG GGD D L+L S + ++++RAHGGSLD V T+V SWD++ + D + DGR+Y+SAISE++ D ETC+G AKN MGEAR+DIE EI
Sbjct: 31 ASPNDPISKPDCDSDIAVSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGKAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEI 215
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.110e-47 Identity = 96/184 (52.17%), Postives = 127/184 (69.02%), Query Frame = 1
Query: 7 SANTPIPKPVCDSSKTVSVRYSSTSERVYLESADG-SRVGCVSPTDIYKSLGVASPLYPLETP---------GEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEI 528
S N PIPKP CD S VS+RYSS ER+YLESAD +R GCV+ I++ +PLY +++ G W+L E+LFV DGI L V+GT GGD D L+L S S F+++RAHGGSLD +ST+V +WD++ + D + EDGR+YVSA+SEV+ D ++TC G AKN MGEAR+DIE E+
Sbjct: 26 SPNEPIPKPECDESIAVSIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEM 209
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 179 bits (454), Expect = 5.180e-47 Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1
Query: 4 ASANTPIPKPVCDSSKTVSVRYSSTSERVYLESADG-SRVGCVSPTDIYKSLGVASPLYPLETP---------GEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEI 528
AS N PI KP CDS VS+RY+ T++R+YLESADG +R GC + I++S +PLY ++ G W+L E+L+V DGI L VYGT GGD D L+L S S ++++RAHGGSLD V T+V SWD++ + D + DGR+Y+SA+SE+V D ETC+G AKN MGEAR+DIE EI
Sbjct: 32 ASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEI 216
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.550e-46 Identity = 91/185 (49.19%), Postives = 124/185 (67.03%), Query Frame = 1
Query: 4 ASANTPIPKPVCDSSKTVSVRYSSTSERVYLESADG-SRVGCVSPTDIYKSLGVASPLYPLETP---------GEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEI 528
AS N PI KP CDS VS+RY+ ++R+YLESADG +R GC + +++S PLY ++ G W+L E+L+V DGI L VYGT GGD D L+L S S ++++RA+GGSLD V T+V SWD++ + D DGR+Y+SA+SE+V D E+C+G+AKN MGEAR+DIE EI
Sbjct: 32 ASPNDPISKPDCDSDIEVSIRYAGNTKRLYLESADGETRGGCATLGQVWESRAGKGPLYAVDPDSGDVSETQTGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDTYINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDGRSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEI 216
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 170 bits (431), Expect = 4.800e-44 Identity = 89/182 (48.90%), Postives = 123/182 (67.58%), Query Frame = 1
Query: 25 PKPVCDSSKTVSVRYSSTSERVYLESADG-SRVGCVSPTDIYKSLGVASPLYPLE---------TPGEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEILISG 540
PKP CDSS VSVRY++ S R+Y+ESA+G +R GCV+ I++ SPLY ++ G W+L E+++V DGI L V+G GGD D L+L S S F+H+RA+GGSLD +ST+V +WD++K+ D + DGR+Y+SA+SEV+ D +TC G AKN MGEAR+DIE E+ G
Sbjct: 6 PKPDCDSSIAVSVRYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLG 187
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 171 bits (432), Expect = 5.570e-44 Identity = 93/189 (49.21%), Postives = 124/189 (65.61%), Query Frame = 1
Query: 4 ASANTPIPKPVCDSSKTVSVRYSSTSERVYLESADGS-RVGCVSPTDIYKSLGVASPLYPLETP---------GEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEILISG 540
AS N I KP C SS VS+RYS TS+R+YLESADG+ R GCV+ DI++ L +PLY ++ G W+L E L+V DGI L V+G GG D L+L S S F+++RAHGGSLD VST+V +WD++K+ V ++ GR+Y+SA+SEV+ D + C G AK MGEAR+DIE E+ G
Sbjct: 25 ASRNKAIAKPSCKSSTKVSIRYSKTSKRLYLESADGNTRGGCVTLEDIWRDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLG 213
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 170 bits (431), Expect = 8.140e-44 Identity = 91/189 (48.15%), Postives = 128/189 (67.72%), Query Frame = 1
Query: 4 ASANTPIPKPVCDSSKTVSVRYSSTSERVYLESADG-SRVGCVSPTDIYKSLGVASPLYPLE---------TPGEWMLNEDLFVLDGIALNVYGTGIGGDCDHLKLRSDSTGFVHIRAHGGSLDLVSTRVTSWDSTKDDVDSNYEDGRAYVSAISEVVADPTETCQGYAKNEMGEARLDIEKCEILISG 540
+S N I KP C SS VS+RYS++S+R+YLESADG +R GCV+ +I+K L ++PLY ++ G W+L EDL+V DGI L V+GT GG+ + L+L S S F+++RAHGGSLD VST+V +WD++K+ V ++ R+Y+SA+SE++ D E C G AK MGEAR+DIE E+ G
Sbjct: 28 SSKNKAISKPSCKSSTKVSIRYSASSKRLYLESADGKTRGGCVTLEEIWKDLDGSAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLG 216 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1350.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1350.3.1 >prot_P-littoralis_Contig1350.3.1 ID=prot_P-littoralis_Contig1350.3.1|Name=mRNA_P-littoralis_Contig1350.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp MFNCGNHGLIISKYYDNTVIASNHIHDNGGVGIFPHFISDDAQISHNVVEback to top mRNA from alignment at P-littoralis_Contig1350:9348..10744- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1350.3.1 ID=mRNA_P-littoralis_Contig1350.3.1|Name=mRNA_P-littoralis_Contig1350.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1397bp|location=Sequence derived from alignment at P-littoralis_Contig1350:9348..10744- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1350:9348..10744- >mRNA_P-littoralis_Contig1350.3.1 ID=mRNA_P-littoralis_Contig1350.3.1|Name=mRNA_P-littoralis_Contig1350.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig1350:9348..10744- (Pylaiella littoralis U1_48)back to top |