mRNA_P-littoralis_Contig135.98.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.98.1
Unique NamemRNA_P-littoralis_Contig135.98.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:387633..388427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789620.7388136-CDS-P-littoralis_Contig135:387632..3877131680789620.7388136-CDS-P-littoralis_Contig135:387632..387713Pylaiella littoralis U1_48CDSP-littoralis_Contig135 387633..387713 +
1680789620.7538245-CDS-P-littoralis_Contig135:388344..3884251680789620.7538245-CDS-P-littoralis_Contig135:388344..388425Pylaiella littoralis U1_48CDSP-littoralis_Contig135 388345..388425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.98.1prot_P-littoralis_Contig135.98.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 387633..388425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.98.1

>prot_P-littoralis_Contig135.98.1 ID=prot_P-littoralis_Contig135.98.1|Name=mRNA_P-littoralis_Contig135.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
AKQDRSHANRPQRLLGSSPGCSNPRWVEIEAALHSDGVYCRRPYRCSNRP
PMSA
back to top

mRNA from alignment at P-littoralis_Contig135:387633..388427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.98.1 ID=mRNA_P-littoralis_Contig135.98.1|Name=mRNA_P-littoralis_Contig135.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig135:387633..388427+ (Pylaiella littoralis U1_48)
GCAAAGCAAGACCGATCTCACGCCAACAGACCACAACGATTACTTGGCTC
CAGCCCGGGTTGCAGTAACCCACGGTGGGTGGTGCGTTAAGTGGCATGAC
TGGACGTTGATTGTTGTACACTTCGGATGTTAAGATAGACAGGCTGCGTG
TCCGAAGGTTTGTTTCTAATCGTTTTTTTTATCCGTAAAATAGTGCGCAG
CACACGCCCTCGGGATTGGTGGGGTTTGTTTGCCATGCTGTGTTATTTGG
GGACAGGAGTGATGTCACAGCCTGCGTGTATATTTTCGTTGCTTTTGCAT
TTCGGCGGGTTCACGAATCAAACGCGTGCATAGTGCAAATCGCGTGGGCC
GCTTATTCTATTACTTCGAAACATTTGTCATGCGGATCGCAGGGTCGCAA
GGAGTTGATGGCGGCGGTCGCACATTATGAGAACGTTGTCTGGGACTCAC
TTCTGGATTACCGCTGCCTGATGTTGAACGACTACTTGTACACGAAATAT
TCAGGTAGTCTAGAACGCCGGACTAAACCGCCCCCCCTTCCGATGTCGTT
GCCTGCTTGTTGGGTGTCACGCGTCACGGGTGGTAGCCAGTGATATGCCA
TAAGTCTGCGGTGCAACGCCAACAATGTGATGTATCTTGCGCGGCGTTTC
AGTCGAAGAATCATTCTCACCCGTTTCACCGACCAACCCCTTTATCGCGC
CTGCAATACCAGGAAATCGAGGCAGCGCTTCACTCTGATGGTGTATACTG
CCGTCGTCCATACCGTTGCTCGAACCGGCCACCCATGAGCGCCAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig135:387633..388427+

>mRNA_P-littoralis_Contig135.98.1 ID=mRNA_P-littoralis_Contig135.98.1|Name=mRNA_P-littoralis_Contig135.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig135:387633..388427+ (Pylaiella littoralis U1_48)
GCAAAGCAAGACCGATCTCACGCCAACAGACCACAACGATTACTTGGCTC
CAGCCCGGGTTGCAGTAACCCACGGTGGGTGGAAATCGAGGCAGCGCTTC
ACTCTGATGGTGTATACTGCCGTCGTCCATACCGTTGCTCGAACCGGCCA
CCCATGAGCGCC
back to top