mRNA_P-littoralis_Contig135.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.92.1
Unique NamemRNA_P-littoralis_Contig135.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.92.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.680e-9
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 VLFGAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAW 129
            ++ G+ LPMQGST TPDR A AG+QRRHTTPSLSTQAW
Sbjct:   49 IINGSVLPMQGSTHTPDRPARAGSQRRHTTPSLSTQAW 86
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BLAST of mRNA_P-littoralis_Contig135.92.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.970e-9
Identity = 34/58 (58.62%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   25 GAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWACHRDNVASIRPLGQLFLLLFDL 198
            GAGLPMQ ST TPDR   AGNQRRHTTPS STQAW   R        L  +F L  D+
Sbjct:   37 GAGLPMQRSTHTPDRPTIAGNQRRHTTPSPSTQAWEESRGARRQRENLADIFGLDADI 94
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BLAST of mRNA_P-littoralis_Contig135.92.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.400e-8
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   16 VLFGAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWA------CHRDNVASI 159
            ++ G+ LPMQGS  TPDR A  G+QRRHTTPSLSTQAW         RDN+A +
Sbjct:   49 IINGSVLPMQGSQHTPDRPAREGSQRRHTTPSLSTQAWEESRGARRQRDNLADL 102
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BLAST of mRNA_P-littoralis_Contig135.92.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.330e-7
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   40 MQGSTRTPDRTASAGNQRRHTTPSLSTQAW 129
            MQGST TPDR A AG+QRRHTTPSLSTQAW
Sbjct:    1 MQGSTHTPDRPARAGSQRRHTTPSLSTQAW 30
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BLAST of mRNA_P-littoralis_Contig135.92.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.200e-5
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   46 GSTRTPDRTASAGNQRRHTTPSLSTQAW 129
            GST TPDR A AG+QRRHTTPSLSTQAW
Sbjct:   74 GSTHTPDRPARAGSQRRHTTPSLSTQAW 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE2.680e-976.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE4.970e-958.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.400e-857.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI5.330e-786.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF8_9PHAE1.200e-585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:379489..380499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size232
Hectar predicted targeting categoryother localisation
Exons3
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789623.2529426-CDS-P-littoralis_Contig135:379488..3795131680789623.2529426-CDS-P-littoralis_Contig135:379488..379513Pylaiella littoralis U1_48CDSP-littoralis_Contig135 379489..379513 +
1680789623.265198-CDS-P-littoralis_Contig135:380249..3803541680789623.265198-CDS-P-littoralis_Contig135:380249..380354Pylaiella littoralis U1_48CDSP-littoralis_Contig135 380250..380354 +
1680789623.275268-CDS-P-littoralis_Contig135:380398..3804991680789623.275268-CDS-P-littoralis_Contig135:380398..380499Pylaiella littoralis U1_48CDSP-littoralis_Contig135 380399..380499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.92.1prot_P-littoralis_Contig135.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 379489..380499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.92.1

>prot_P-littoralis_Contig135.92.1 ID=prot_P-littoralis_Contig135.92.1|Name=mRNA_P-littoralis_Contig135.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
LFINFVLFGAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWACHRDNV
ASIRPLGQLFLLLFDLARNGKPRHRR*
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mRNA from alignment at P-littoralis_Contig135:379489..380499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.92.1 ID=mRNA_P-littoralis_Contig135.92.1|Name=mRNA_P-littoralis_Contig135.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1011bp|location=Sequence derived from alignment at P-littoralis_Contig135:379489..380499+ (Pylaiella littoralis U1_48)
TTGTTCATCAACTTCGTTCTATTCGGTGAGCTTTATTGTGTTGAACGATT
CTTCTTGTGCAGCTTGTCCAAATACATTTGAGGCCGCAGCCGATTTCGAC
GTACTGTGGGACTATTTCAGTTATTGCATGTCGGGTAAGTCCAGCTTTAC
ATAGGACATGTCCTCCCGCTGGTCGTCCGTTCCAGGTAGTATTAAGGCTT
GAAAGGGTGTTATCGGTAGGGTTAGACTAACTGCCACGCCGCAGTTCCAC
GCCACAGTTGGTTCCGCGCACCTTCGAATCTAGCTTCGCCCTCCCTTCAT
AAACAGAGAAAAAAACTACTCCAAGTCTGACCGACCGCGTCTTATCTACT
CCGTATTATTTATTTATCTTTTTCGCTCCGACTTCGAGTTTGTCCTGCGA
CTGGCTTTCTTGCTGGATAAATGTGTGCTCCCCCCTGCGCCTTGTGGCGG
CGCTGATGATCTTGTTCTCAATGTCCCCGTTGTATCTGGGTGTTGACCCA
ATACGGTCAACCCCAAGACAATTCAGGGATCACCTTCTTGGCGCCGTGGT
TGTTTGTGGAATTCCACGATCGACCTCCCAGTGTTCCTTCAAACGCGAAC
GATCGTAACCCCCGGAATGCTACCGTTGCATGTTGTGCTATGGAGCGGCG
ACGTCCGTTTTTTTATCCATTTGCATCGTATGGATATACCAAGGAACACT
ATGCGTGCTGCATTTTGAACAGACAACACATGCGCTTTGCTACCCTGTCA
TCCAAACCCAGGGGCAGGACTACCGATGCAGGGATCTACCCGCACGCCAG
ACAGGACCGCAAGCGCGGGGAATCAACGACGGCACACAACGCCATCGCTG
AGCACGCAGGCTTGGGAGGAAAGCAGGGGGGCTCCGCGCCAACGTGTGAG
TGGAATTTCTCGTGTCACCGAGACAATGTTGCGTCTATACGCCCTTTGGG
TCAGCTGTTCTTGCTGTTGTTTGACTTGGCGCGGAACGGTAAACCCAGAC
ACCGACGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:379489..380499+

>mRNA_P-littoralis_Contig135.92.1 ID=mRNA_P-littoralis_Contig135.92.1|Name=mRNA_P-littoralis_Contig135.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig135:379489..380499+ (Pylaiella littoralis U1_48)
TTGTTCATCAACTTCGTTCTATTCGGGGCAGGACTACCGATGCAGGGATC
TACCCGCACGCCAGACAGGACCGCAAGCGCGGGGAATCAACGACGGCACA
CAACGCCATCGCTGAGCACGCAGGCTTGGGCGTGTCACCGAGACAATGTT
GCGTCTATACGCCCTTTGGGTCAGCTGTTCTTGCTGTTGTTTGACTTGGC
GCGGAACGGTAAACCCAGACACCGACGATGA
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