mRNA_P-littoralis_Contig135.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.61.1
Unique NamemRNA_P-littoralis_Contig135.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.61.1 vs. uniprot
Match: D8LSG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG2_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 1.100e-70
Identity = 138/193 (71.50%), Postives = 151/193 (78.24%), Query Frame = 1 
Query:    1 MRLAALARGGAGRASLSGGEMRSVRDWELLKDAEAAAKEKEGSSTAGGADNDAQQWAAPFATRLDLDTLEDLVEGAGGFVSDREAEEALAEGGDLEKDQLGRVTLVGFIRWCRLREKRRQEAAAKLRNPPPPWMERLRCWRKMWNEGVIQELARLKKRTSGRNTRLKNARSTTNGTVSGNDGGSLASSMESSL 579
            MRLAALARGG GRASLSGGEMRSVRDW+LLK   AAA   EG       + D Q W APFA RLD+DTLEDLVEGAGGFV+DREAEEALA+GGDLEKDQLGRVTL+GFIRWCRLREKRR EA A+  NPPPPW ERL+ W K+WNEGVI ELARLK+    RNT  KNAR T + +   N+ GSLASS ESS 
Sbjct:  589 MRLAALARGGEGRASLSGGEMRSVRDWDLLKAEHAAANGNEGE-----VEKDTQ-WTAPFAARLDVDTLEDLVEGAGGFVTDREAEEALADGGDLEKDQLGRVTLLGFIRWCRLREKRRLEAEARRHNPPPPWKERLKHWHKVWNEGVILELARLKRSILARNTLQKNAR-TADMSAGDNESGSLASSTESSF 774
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG2_ECTSI1.100e-7071.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:225503..228151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons4
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.7500029-CDS-P-littoralis_Contig135:225502..2256231680789622.7500029-CDS-P-littoralis_Contig135:225502..225623Pylaiella littoralis U1_48CDSP-littoralis_Contig135 225503..225623 +
1680789622.7634153-CDS-P-littoralis_Contig135:225944..2260711680789622.7634153-CDS-P-littoralis_Contig135:225944..226071Pylaiella littoralis U1_48CDSP-littoralis_Contig135 225945..226071 +
1680789622.7721844-CDS-P-littoralis_Contig135:227005..2271831680789622.7721844-CDS-P-littoralis_Contig135:227005..227183Pylaiella littoralis U1_48CDSP-littoralis_Contig135 227006..227183 +
1680789622.781977-CDS-P-littoralis_Contig135:227956..2281511680789622.781977-CDS-P-littoralis_Contig135:227956..228151Pylaiella littoralis U1_48CDSP-littoralis_Contig135 227957..228151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.61.1prot_P-littoralis_Contig135.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 225503..228151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.61.1

>prot_P-littoralis_Contig135.61.1 ID=prot_P-littoralis_Contig135.61.1|Name=mRNA_P-littoralis_Contig135.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=207bp
MRLAALARGGAGRASLSGGEMRSVRDWELLKDAEAAAKEKEGSSTAGGAD
NDAQQWAAPFATRLDLDTLEDLVEGAGGFVSDREAEEALAEGGDLEKDQL
GRVTLVGFIRWCRLREKRRQEAAAKLRNPPPPWMERLRCWRKMWNEGVIQ
ELARLKKRTSGRNTRLKNARSTTNGTVSGNDGGSLASSMESSLGSRGRIG
SGDGGGG
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mRNA from alignment at P-littoralis_Contig135:225503..228151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.61.1 ID=mRNA_P-littoralis_Contig135.61.1|Name=mRNA_P-littoralis_Contig135.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2649bp|location=Sequence derived from alignment at P-littoralis_Contig135:225503..228151+ (Pylaiella littoralis U1_48)
ATGCGACTCGCGGCGCTCGCTCGGGGCGGTGCAGGGCGGGCGTCGCTGAG
CGGCGGAGAGATGCGAAGCGTTCGGGACTGGGAGTTGCTCAAGGATGCGG
AGGCCGCCGCCAAGGAGAAAGGTAGGTACTGCCGTACCTGTGCATGCAGA
GCAATTGCTCCCCGCAACCACTGCAATGTTTCCGCCGGAACCCGAGGGGC
ATGAATAAGAATGCAGAATTGTTACTGCCTTAAAACATTATAGGCAGACA
TCAAAGAAACGCACATAAGGAGGGAGGGAGAAAGGGAGGGGCCGAAAAAT
CCGGGGGACATCTTCAGCCCCGAATTCTGCAAGCCTCCACTTTTCGATGA
AGTTGTTCCCCCCGCCCCAAACGTTGACTCCTCTTGCCCCCCCCCGATCC
AAGACGCCTCCGTGCGTGTTTAATCTGATCCCGCATGGACAGAAGGGTCG
TCGACCGCCGGAGGAGCGGACAACGATGCACAGCAGTGGGCGGCTCCATT
CGCTACCCGGTTGGACTTGGACACGCTCGAAGACCTGGTCGAAGGCGCCG
GGGGCTTCGTATCGGACAGGCATGCTCTACATAGAACATTTTTTAACGGT
GTCGTTATCTATTACTTCCCGTTCCACCCACAGCAACGCTGTTGTTCTTG
TTTGTTGTTGCCGGCGTCTTCACCATGAAATCCCTCCTGGCGTTCACGAC
TCAGTACCTCCCTTTTCGGTACCGGCCGCAGCAGTCAAAGGCGGCCATCG
TGAACGCACACAAGCCCAAAACTCCAATGGTGGGCAGTAAAACGTACATG
AGCCCGGAGGGATGCTCATTGCCGCTAAGTGAGACACAAACCTAGAAGAT
GCAGAAATCCACGGGAGCAGGAAAGCAGGCACGACCTAGACGTTTTTTTT
TTCTGATAGCCTGCACCTATCGGAATTGTTTCTCGCCCGGAGCCGGACAC
GAAAATTTGTGCTGCTCGGGGTTCGATAGTACCTCCGTTGGCTGTTGCGG
GCTAGTACTTGGAAAGGGACGACTTGCGTCGGGTACGAGGACATGCACAG
CATACCGTCACCGTACGAAGGGTACACATGGGCCTTGGTGACTAATCACG
AGGGAGTAGCTTTGTTTTTGTGCATTTGGTGGTAACGGCTTCAGACGACA
AGGTCGGAGGTATAACTCATATCTCCACTCGCTGAAACGTGCCGGTAGTT
CATGTCCCAATGCCTATCTGGCGTCCAATCTTATGTCACTCCGTTCGTTT
TCATCGGTGATTATGCGGCACCGTCAAGGGACAGTCTTCCGCGGTGTGTC
CTTACGGGCATCCTCAGGGCAGGGGAGACTGGTTATGAGTTTAGTGGTTT
CGTCGCCACCATCTCGTTCGCAAACCATTGCTCGTGTTGGCTTCTGCCGG
TGCCGTGTGTGGCAAAGGGTACGCAATCTTGTGCGAGAAAGGTCGACTGT
TCTTGATATTTCGATCATACTTGGATGTCAAATCATCTCCTTCTCCCTTT
CAGGGAGGCCGAAGAAGCCTTGGCTGAAGGGGGAGACCTTGAGAAGGACC
AGCTAGGCAGGGTCACGTTGGTGGGTTTTATCCGTTGGTGCCGACTGAGG
GAAAAGAGACGGCAAGAGGCGGCGGCAAAGCTTCGCAACCCACCACCGCC
GTGGATGGAGCGCTTGAGATGTTGGCGGAAGGTGATACGGCAGCGTTGAC
TTGTTGGTTCTGTGATTATCTTTGTTTTTGTCGGTGCGTTTCTCGTGTTT
CTTGTTTTGAGGTTGGAGGTCGCAACCATACTTGTACACACGTATGGGAC
AACGTGACGCTAGACGTTGATTTTTCGATGAATGCCTAAAGATCTCCTGC
GCTTCTCCGCTTCTGCTGAACCTCGGTGGCTTGACATGTCCTGGCGGTGA
CTCCCGCTGCACGTTTGCGCACAAATCTTTGTCTGACTCCAGACCACGAC
GGATTTTTGGCGAAGCAGCAGGGTTGTGTGTGAATGTATTGCGTGTGGGT
ATGAGGCGCGTTCTCATTAAATCTATTTGCTGCACGCCAGTCTACACCTT
TCGGTACATGCTGGTGCATCAACGGGAAGGGTAGTGCCGTCCCTTCGCCT
CGTCGGCAGTCAACTCGACTTTCGTGCGCCCACGTAAAATAACAAACCAG
TCCGCGTGGCTTCGCCGAGCCTGGAACCCGCACCCCAACCGTCGCAAGGG
TGTCGAGGCCACGGCCTGAGTTACCGGGGCGACCGGCTGTGGTATCATGC
ACGAAGTCATAACTTATGGGGTTCCAGGACCCAGTGCGTTTGGTATTCAA
CACACCAAGCACGACGAATTCCGTGAACTAGTTTGTTTCTGAAAGACAAT
CGAAACATTGATGCATACAGCTTTGCGTCGCTCCAGCCGTAGATACGGAG
ACACCCTCCGCCTTCAATCCTTTTTGCTCATCAACACGGCGCCCAACAAG
ACAGATGTGGAACGAGGGTGTGATCCAAGAGCTAGCGCGGTTGAAGAAAA
GGACGAGCGGACGCAACACTCGCCTCAAGAACGCCCGTTCCACCACCAAC
GGGACCGTCAGCGGCAACGACGGCGGAAGCTTGGCCTCGAGCATGGAGAG
CAGCCTGGGCAGCCGAGGACGCATCGGCAGCGGTGACGGTGGCGGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:225503..228151+

>mRNA_P-littoralis_Contig135.61.1 ID=mRNA_P-littoralis_Contig135.61.1|Name=mRNA_P-littoralis_Contig135.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig135:225503..228151+ (Pylaiella littoralis U1_48)
ATGCGACTCGCGGCGCTCGCTCGGGGCGGTGCAGGGCGGGCGTCGCTGAG
CGGCGGAGAGATGCGAAGCGTTCGGGACTGGGAGTTGCTCAAGGATGCGG
AGGCCGCCGCCAAGGAGAAAGAAGGGTCGTCGACCGCCGGAGGAGCGGAC
AACGATGCACAGCAGTGGGCGGCTCCATTCGCTACCCGGTTGGACTTGGA
CACGCTCGAAGACCTGGTCGAAGGCGCCGGGGGCTTCGTATCGGACAGGG
AGGCCGAAGAAGCCTTGGCTGAAGGGGGAGACCTTGAGAAGGACCAGCTA
GGCAGGGTCACGTTGGTGGGTTTTATCCGTTGGTGCCGACTGAGGGAAAA
GAGACGGCAAGAGGCGGCGGCAAAGCTTCGCAACCCACCACCGCCGTGGA
TGGAGCGCTTGAGATGTTGGCGGAAGATGTGGAACGAGGGTGTGATCCAA
GAGCTAGCGCGGTTGAAGAAAAGGACGAGCGGACGCAACACTCGCCTCAA
GAACGCCCGTTCCACCACCAACGGGACCGTCAGCGGCAACGACGGCGGAA
GCTTGGCCTCGAGCATGGAGAGCAGCCTGGGCAGCCGAGGACGCATCGGC
AGCGGTGACGGTGGCGGCGGC
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