mRNA_P-littoralis_Contig135.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.11.1
Unique NamemRNA_P-littoralis_Contig135.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.11.1 vs. uniprot
Match: A0A6H5KUR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.030e-34
Identity = 78/132 (59.09%), Postives = 97/132 (73.48%), Query Frame = 1 
Query:   49 AQLKTTADRIKSINENHSALQDIIRRSLLSQERAIATADAHRIVRRQSLQDVKETREAGKQTEKKAKEVLGKIRVWEKTARVGEKIALEVAGAVTQRAECLRDEVERLVGGMQEQNVRMDILAVFRVLHGPF 444
            A LK TA+R K I E+  ALQD++RRSL S+ERA A  D HR VRRQSL D+KE REAGK+TEK+A+EVL KI++WEK A+V E++A E A AV +RAE L D V  L G M+  N  M+ LAVFR+L+GP 
Sbjct:   10 AMLKRTAERAKFIEESRGALQDVVRRSLASRERATAITDTHRAVRRQSLHDMKEMREAGKKTEKEAREVLAKIQLWEKAAQVSEELAFEEADAVARRAETLEDAVALLAGLMERHNSHMERLAVFRMLNGPL 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUR2_9PHAE1.030e-3459.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:57503..63866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2763
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-21_003540.1
Cds size582
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.11.1prot_P-littoralis_Contig135.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 57503..61686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789620.9633434-CDS-P-littoralis_Contig135:57502..575921680789620.9633434-CDS-P-littoralis_Contig135:57502..57592Pylaiella littoralis U1_48CDSP-littoralis_Contig135 57503..57592 +
1680789620.9779-CDS-P-littoralis_Contig135:58202..582951680789620.9779-CDS-P-littoralis_Contig135:58202..58295Pylaiella littoralis U1_48CDSP-littoralis_Contig135 58203..58295 +
1680789620.9908037-CDS-P-littoralis_Contig135:58923..589831680789620.9908037-CDS-P-littoralis_Contig135:58923..58983Pylaiella littoralis U1_48CDSP-littoralis_Contig135 58924..58983 +
1680789621.0016422-CDS-P-littoralis_Contig135:59912..600891680789621.0016422-CDS-P-littoralis_Contig135:59912..60089Pylaiella littoralis U1_48CDSP-littoralis_Contig135 59913..60089 +
1680789621.0120556-CDS-P-littoralis_Contig135:60556..606061680789621.0120556-CDS-P-littoralis_Contig135:60556..60606Pylaiella littoralis U1_48CDSP-littoralis_Contig135 60557..60606 +
1680789621.0250468-CDS-P-littoralis_Contig135:61574..616861680789621.0250468-CDS-P-littoralis_Contig135:61574..61686Pylaiella littoralis U1_48CDSP-littoralis_Contig135 61575..61686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789621.0360425-UTR-P-littoralis_Contig135:61686..638661680789621.0360425-UTR-P-littoralis_Contig135:61686..63866Pylaiella littoralis U1_48UTRP-littoralis_Contig135 61687..63866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.11.1

>prot_P-littoralis_Contig135.11.1 ID=prot_P-littoralis_Contig135.11.1|Name=mRNA_P-littoralis_Contig135.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
EWSSKPLSEKDVRTARAQLKTTADRIKSINENHSALQDIIRRSLLSQERA
IATADAHRIVRRQSLQDVKETREAGKQTEKKAKEVLGKIRVWEKTARVGE
KIALEVAGAVTQRAECLRDEVERLVGGMQEQNVRMDILAVFRVLHGPFRA
RAPPNKRSVSRGNLQPARHAEGASVKEHLRTLRDVEGPESALG*
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mRNA from alignment at P-littoralis_Contig135:57503..63866+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.11.1 ID=mRNA_P-littoralis_Contig135.11.1|Name=mRNA_P-littoralis_Contig135.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6364bp|location=Sequence derived from alignment at P-littoralis_Contig135:57503..63866+ (Pylaiella littoralis U1_48)
GAGTGGTCGTCAAAACCGCTGTCGGAGAAGGACGTGAGGACTGCGAGGGC
GCAGCTGAAGACGACGGCGGATAGGATCAAGTCCATCAATGTAAGCTTTA
AGGTCCTGCCATTTCACTGTCTGCGTGGCTTGTGTCAACTCTCTTAATTT
CGCTTTTTCATGTCATACGCTTCGTATGTCATCGTGCGGTCCCGTGTCAA
AGTTTAGGTTTCCAAGTTTTTTTTGTGTTTTAATGTTGTTTGTCAATATA
CGTATGTATCGCAGCGTTTGTCTTCTTTTTATTTTTTTGTGTTTCGGTGT
TGTTCGTCACTAAACGTATGTATGGCTGCGTCTGTCTTCCTTTTATTTTT
GCTACCCACTGGGGAGAGAAAAAAAAAAATCCTCCTTCCTTCCTTCCTTG
TTCCTCCCGCCGCGCGGATTTTTCCAACTCGCTGAGGGGTAATTCCCCCC
CCCCTACCCCGTCAGTGCTTCGAGGGGGGGCTGCAAGAAGGATTGAGGGG
AGATTTATTCTCCTCCCCCCTCGCGAACGCTTCGGGGGGTTCGTATTTTG
CGTTCTTCAAGGTTTCATTGATTGCCGATCCTGGACGAAGACCCGAACAC
CTGCGCATGCACATCAGGCTACCAATACTTGACGCCCCCCCCCCCCCCCC
ACCACCACCAACAATCGCCGTCTCGTACACAAAACACCTGTTGTTTTTAG
GAAAATCACAGCGCCTTGCAGGACATCATTCGGAGGTCCTTATTGTCGCA
AGAGCGGGCCATCGCCACGGCTGATGCCCATCGGATCGTGCGGGTGAGAG
CCCCCCCCCCCCCCTCCCTCCCTCCCTCGCCCTCTTCCCACCTCTGTGTA
CCACCATTAAGGCTTGTTTTCTACTTGCATGGGGCCCGAAGTAGTGCGGG
ATGCACAACAATGGTGTCTCGATACCAACGTGCGCGGGGCGTTTTTCTTG
CTTGATGTACATCACGAGATAGTGATCTGAAACGTGTAGGAGGAAGACTG
GGATAAAACGCATTATTCTGGACGAGAGTCGTGGAAAGAGGCGGCGCTTC
AGTTGTGGTGGTGACGCGACGAAGCAGCATTGCGGGTAGGGGGGAGGGGG
GAGGGGTGATGTTTGACAACAAATAATTTCCGTGTGGGGGGTGGTGTGGA
TTTGATAGTATCAGGAATATTCCTACAGATTTCCAACTGAACCTACAAGT
ATCCACCAAATCTAGGGAGTTTTTGCCAGCAGGAATGGACGAAGAAACTC
ACGGACGCCCCTGCCCCCCCTTGCCCCTTGTATTGTCACTTTTCCTCTTT
GCTTCTCCCATCCGCCTAAATTTTTTCATCTCGTCGGCGTCCATTTTGTT
TGTTTGTCTCTTGATTTGTGTGTTCTTGTTTGTCTGCTGGCTGCTACTCG
TATGGCACTTGCGCTGTTCAGAGGCAGTCCTTGCAGGACGTGAAGGAGAC
GAGGGAAGCTGGGAAACAGACGGAGAAGAAGGTACACTGCCGTACGACAC
AAAAGGAAGATGAACAGCAACAAGTTTAAGCGAGAGACAGAGCGAGAGAG
AGACCGCACTAAAGTCTGGAGCACCCCCCTCGTTAATGCAGCTGTGTCAC
CCCCTCGTTGCTATCGCACATGGCAAGAATGTTGTCGTTGTTTTCCCGCT
AAATGCGACCTTTGCCGCGTCACCGTTGGTTACCCAAACTCTTGTGCAAA
TATCCACGAGCCCGACCAAGGCGTTGCCTCTGGCTCGTTTTTTATTTTTC
TATCCTCTTGATGCCTGGTACACGCAACGAGAGGTGGTGTTTCAAAGCCT
CGTTCCTGCGTGGCTATGACACCAAGCGCATTGCTATCGATTGTTTCAGG
GTTGCGACAGGTAGGAACGAGATCTTCACGAGTTCAAAAATCGCGCGCGG
TTGTGTCATTTCGTGTGTGTGTGAATCAAAACATGACGTCTGTTGTGAAA
ACGTTTGAAATAGTCTCGGAGGTTGGCCATTTTTGAACGAGAGAGAGGGA
GAAATAGCGGAAATACACACAACCCACTCACCCACACACATATTTGTTTT
TTTCGAGTCGGAATTTTTTTTATTTTTTTTGCCACGACAGAAGATGCCCC
TCGGTTGGGCGGCGTTTTTGCCTGTTTTATTTTCTAACGGCCTTCCTCCG
TTTCATTATTTTCATTTTTATGTTTGTTTTCCTCCTATAGTCGTGGCACG
GAGTGGTCATGGTTTGGGGGGAGGGGCTAAAGTTTTGCAGTGAGCTAATT
GAAGAACCAAGTGAGATGATAATTTAAGAACCAACACCAACAACAACTGC
ACGACACGAACACACACACACATGTTCGTGACAATTTTGCCAGGCACCCG
ATCGTTCGCATCACATGAAATTTGTTCCTTCTCTCCTCATCACATCATGA
TGCAAAACAGGCCAAGGAGGTTCTCGGCAAGATTCGAGTCTGGGAGAAAA
CAGCCCGCGTTGGTGAGAAGATCGCCCTGGAGGTGGCCGGCGCCGTGACC
CAGCGGGCAGAATGCCTCCGAGACGAAGTGGAACGCCTGGTGGGCGGGAT
GCAGGAGCAGAACGTCCGGATGGACATCCTTGCCGTGGTGAGTGAATGAA
TGAGCGTGTGCGGCATCTTTGAGCGGCGGGTTGGGGACCCAGGACCCTTC
TTTGATTGTTCCTTTATTAATAAATGGCGAGCCCGTTTTTTCAAAGAACT
TGTTCTTTTCTGTCGTGTCTTGTCATGTATACCCTGTTGCTATGCACCCT
CCGCCTGTTTTTTCGGGGGATGGAGCGAGACGTGGGCGTAGGCATGTGGG
CGTGCGTGCGTGCCGTGAAGGACTATGTGTGAAGTGCTGCGTGCAGAAAC
CTCGAAGTGCTTTGTTTTGGTGCTGATCGTGAGCTATCCGCCCCCCTTCC
CTCTAACTTTCCAACCCGCCACCCCCTGCCCGCCCCCGCCCCTCCCCCCG
GTTTTCCGTTGTTTTTGCGCGGCGTTATGTCCGTCATGTTTGGCCGCCAC
CGCCATCTCAACCATCGCCAACACCACCAACACCACCCCCCGAATGGTCC
GCAGTTTCGCGTACTGCACGGGCCGTTCCGAGCACGAGCACCGCCAAACA
AGAGGTAGCCGCAGAGTACCTCAAGCAAGCAGGACGCTAACACTTAATCT
TACCTTGAGAACCAAACGTACGCGATCATCAAGTACCCTGCACCTATCAT
ATTGTATGGTATGATGCGACATGATATATCTGGTATATTTTTGCGCGGCT
CAAGGGTGAGAAATAAAACAGCGAAATACATACTTCGAGTATCACGTGTA
GCTGCTGTGTTTTGACTTGACCAGAGTCGTTCGAAATATTTGCTGCAAGG
GGATTTTCCGGATAATGACGCTCCTCGTCGGGCTTGGATGGACGTTTGCG
CCTCTCTTTGCTGCTGTAACTGTTGTTGTCGTTGTGCTCCTTCTTCTTGT
GCTTGTTCTTGTTCTTGTTCTTGTTCTTGCTCGTCTTCATGCTTGTCTGT
CGAAGGGATTGAGGGTCGGGGGGGCAAGAGAGTGAAAGGAAACTCCGGCG
TATTGTTTGGTTTTGTCTCTCATCCTGCTGCTGCTGCTGCTGCTGCTGTA
CTTTTTTTCTTTTTTTTAGGGTAACGAACGAGGAAAAGAGAGTGGAAGAG
TGAAACTTTGGTTTGCTTGCTGTGGGCGGGACGGCTCGCGCTGCTGTTTC
CCTGCGCCCAACAGCAATCTTGTGTCTGTGCCTCAGACGTGTTTGTTTTT
GGTTCGACCGTTTCGAGTCTGAAGACAAGCGCACCATCTTCTGCTGTACA
GCTGGAGTCACTCTCCGCCCGCAGAAAAAAGTGTTTTGATCGTTTCAGCC
GTACGAAAAACGTTTTCCTAAAACATGCGTGCATGCAACAACAACAGCAG
TCCCAGGGACGAGTCAGATGATGACTATAACATTGTTTCCCCTCCTCCGC
TGACAGCAGTAGCCCATCGCCTGCCTGCCTGCCTGCCGAATCCATCATCT
CATTTCATTGAACACCCCGCGTGTGTGTATATGCTCGTCCGACGCCCCCG
TGACATGCACGGCGCCCCCCAGGAGTGTGAGCAGGGGTAATCTGCAGCCT
GCTCGTCATGCGGAGGGAGCGTCCGTCAAGGAGCACCTTCGCACGCTCAG
GGATGTGGAGGGCCCCGAGAGCGCCCTGGGTTAGCCCTGGCTACCCCCCG
TCTGCACCGCCGAAAGTTCTTCAAGTTCCCTGCGCAGATGGTCGAGGTTG
AAGGGGACAGCGGCGGACAGGCGGCGCCGGGAAGCGTGGCGCTGCTGCTG
GCGTAGGCGTAGGCGTAGCGCCTCGAGCATGGCAACCGGTACTGCGCCGC
AACGTGGACTGCGCCACGTGTGGACGCAGGATGCGAGTGCAATGAGGCCC
TCCAAACTTCGCACCATCAGTTCTTGTGAGCTCCAGGGTCGAGATCTGCA
CGGTCCCGGAGAAACAAAAAGCGCCGTCCGATCAGGGGCATCGATCGACG
GCGTCGAGGCCCGTCGAGAACTATGATGGAGGGAGTGCAAGTGCGGTGGG
AACGTTGATCATCCGGGAGCCGGGAGGTTGCAGCTGGCGCCATGTTTAGT
GTGGGAAGGTGGCTGGATATTCTTGTATTTTTTATTGTTGTTTACTTCAC
GGAATTTCTACACGAAGCGCAAGCGGCACGCAGTTTTTCGTTATTGGCCG
TTGTTTGAGTGGTTGCGTGTTGTATGAATCTCTGAGTGCGTACGAAAGTT
AAAAACAGCAACAGCAACACCCCATAGCACACACCTATCCTAGCCCGTGG
TCACGAGACACTGCAGTGCTAGGAGGAGACTCGTGTGTGCGTGCGGATGC
TTCTTTGCGTCCGTTTGTCGTGTCACTCGGTGCTTATTTTCTTTGCTTTT
GGGTGCGTGCGTCAATGCGTCAGGGCAATATCGATGCAGCAGTAGATGTA
TTTTTCTGTGTTGTGGGTTAGGCGCCGTAGGTTTCGTGTCTTTCTATTGT
AGCAGTCCGCGGTCCGTAGTGTAAGGTATGTCGTGCATGTGACTGAAAAG
GCTGCGGGGCGAAAAATACGGTTTGGTTGTATGTGAAGAAGGGGGAGGCA
GCGTGGAGCTGGCGGTTGTACAGCAGTGTCAGAGTCCCCCCCAATTGACC
TGCGCCAAAAAACTGATGACTTGATCGCAGAAAAAAGAATAGAGTATCGT
TTGCCTTTCACTGCTTTCTGTGTGTGTGTGCGTTTTTTGTATAGTCTACA
GCAGTTTTTCAGCAAAGAGAGAGAGAAAAGGTGCCCGCAGTTTTCTGATT
GGACAATTTTTTTGAAAGGAGAGTTCTGATCGACCAAAAATCTCTGTTCG
TATGGTATCATATGTGGGCACCAATTTTTTACCTCGAAGTTGTACTGTTT
TGTAAGATATTTGTGTTCAACGCAAAAATGTACGAAGTGGTTCACTGACG
TGTAGCTCCAAAGACGTGTAGCTCAAGAGAGAGAAATACATCAAGTGCCC
ACAGTTTTCCTATTACGCAACATGGGCACTTGATGTCTTTCTCTCTGGGT
CTGGCGTAGCTAGCGATCAGTTGCGAAACCTTGCGGGTTATGGTGTTCCA
AGAATGCACGCAATTCCTCTCCTCTGTACTGCTGTAGTTTTTTTCTGTAT
TATTCGTGCTATTTTTTTTAAGTACACGAGGGGAGTGGGGGGGTAAAATT
TTGGGTTGTATAATTTGGGTTGGCTCTCGCTTCTGCTGCTGCTGCTTTTG
TTTTTGTTGTTGTTTCTTGGGCACCAGCAGCAGCAGCAACGTGTTGGTCA
TAGATGACCACATTCTTGTTGATAGCTAGATGGGTTATACCGTTAAGTCG
TTGGCATTGAGGATTTTGTCCCCCCCCCTTCAATTTGCAAGTAACGCACA
CGTATCATACAGACATGCACTTTTACTTTTTTATGCTGCTGTTATGTTAA
TTTCTTGTTTCCCCCGAAACGTGAAACCGCCGACGAAACATACGAAGAAT
GATGCAGCAGTACACAGCAGTACATGTTACCGGTATATATAGTGCAAGGA
GCTGGGTCATGGTGTGTGTGTGAGTGTGTGTGTATTCCGTCCCATTTCTT
CTGCGCACTGCGAGTAGTCTGGACCTTTCGGTACGAAAAGGTGGGTGCAC
CAGCTGGTGTGTGTGTTGTCGTCCCATTTATTCTGGGCAGCAGTCTACAC
CTCTGAATATGATGTGAGTGCTATAGCCGGGGTCACACAGGAGGAAGGTC
ACACACGAGCTTTTTCATTTTTTGTTTTGTTTTATTGCCCACACCTTTCC
ACCTGCGGTACTTGCCTTTGGTTTTCAATGCGAGTCGGGTTCAGCAATCA
ATCCCTTCCACCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:57503..63866+

>mRNA_P-littoralis_Contig135.11.1 ID=mRNA_P-littoralis_Contig135.11.1|Name=mRNA_P-littoralis_Contig135.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig135:57503..63866+ (Pylaiella littoralis U1_48)
GAGTGGTCGTCAAAACCGCTGTCGGAGAAGGACGTGAGGACTGCGAGGGC
GCAGCTGAAGACGACGGCGGATAGGATCAAGTCCATCAATGAAAATCACA
GCGCCTTGCAGGACATCATTCGGAGGTCCTTATTGTCGCAAGAGCGGGCC
ATCGCCACGGCTGATGCCCATCGGATCGTGCGGAGGCAGTCCTTGCAGGA
CGTGAAGGAGACGAGGGAAGCTGGGAAACAGACGGAGAAGAAGGCCAAGG
AGGTTCTCGGCAAGATTCGAGTCTGGGAGAAAACAGCCCGCGTTGGTGAG
AAGATCGCCCTGGAGGTGGCCGGCGCCGTGACCCAGCGGGCAGAATGCCT
CCGAGACGAAGTGGAACGCCTGGTGGGCGGGATGCAGGAGCAGAACGTCC
GGATGGACATCCTTGCCGTGTTTCGCGTACTGCACGGGCCGTTCCGAGCA
CGAGCACCGCCAAACAAGAGGAGTGTGAGCAGGGGTAATCTGCAGCCTGC
TCGTCATGCGGAGGGAGCGTCCGTCAAGGAGCACCTTCGCACGCTCAGGG
ATGTGGAGGGCCCCGAGAGCGCCCTGGGTTAG
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