mRNA_P-littoralis_Contig1347.2.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1347.2.3
Unique NamemRNA_P-littoralis_Contig1347.2.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1347.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1347contigP-littoralis_Contig1347:17853..19506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size509
Hectar predicted targeting categoryother localisation
Exons4
Cds size297
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1347.2.3prot_P-littoralis_Contig1347.2.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1347 18506..19118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.821908-UTR-P-littoralis_Contig1347:17852..179571680789619.821908-UTR-P-littoralis_Contig1347:17852..17957Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 17853..17957 -
1680789619.8340254-UTR-P-littoralis_Contig1347:18436..185051680789619.8340254-UTR-P-littoralis_Contig1347:18436..18505Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 18437..18505 -
1680789619.8617902-UTR-P-littoralis_Contig1347:19118..191211680789619.8617902-UTR-P-littoralis_Contig1347:19118..19121Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 19119..19121 -
1680789619.8704622-UTR-P-littoralis_Contig1347:19471..195061680789619.8704622-UTR-P-littoralis_Contig1347:19471..19506Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 19472..19506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.8435404-CDS-P-littoralis_Contig1347:18505..186701680789619.8435404-CDS-P-littoralis_Contig1347:18505..18670Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 18506..18670 -
1680789619.8534565-CDS-P-littoralis_Contig1347:18986..191181680789619.8534565-CDS-P-littoralis_Contig1347:18986..19118Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 18987..19118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1347.2.3

>prot_P-littoralis_Contig1347.2.3 ID=prot_P-littoralis_Contig1347.2.3|Name=mRNA_P-littoralis_Contig1347.2.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MARKSKNMPNEDVAAYFMIEVGQTWSPPLKTLIAVSLLKESGLPIQVGSS
APALAPQRLWRGPGLFTARPATWYCRSCMGLRPTRHGRPLPLSINMLS*
back to top

mRNA from alignment at P-littoralis_Contig1347:17853..19506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1347.2.3 ID=mRNA_P-littoralis_Contig1347.2.3|Name=mRNA_P-littoralis_Contig1347.2.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1654bp|location=Sequence derived from alignment at P-littoralis_Contig1347:17853..19506- (Pylaiella littoralis U1_48)
CCACGTCGCAGCATCCGGCCCTGGGGCTCGCAAAGGTAAGTAACGTGTGT
TTGGGAGTGATACTGCCGTATTTGTAGGGACTAGGAATGAGGGAGAGAGA
GAGAGAGAGAGAGAGAGATAGAGAGAGAGCACATCACGAGCATGCATGAG
ACCCCAAAGTCACCTATTCTGGGCGTGGTAGTGTTTGTCTCAACATAACC
CTGAGACGGATGATCACTCTTTGAACCCTCTTGGAGTACCGGCAAACTCG
CCACACCTCATGTGCTTGTAACCCCGCTTACACAAAGCGTGTGTCACCAT
TGATTTCGTACTTTAAGTCAACAGAACACGCCTCCACACCGAACGCAAAA
CCTCTACTGCCCCCCTCCTCCCTTGGTGCTACCAGGACATGGCACGTAAG
TCCAAGAACATGCCGAATGAGGACGTCGCCGCGTACTTCATGATAGAAGT
GGGGCAGACGTGGTCTCCGCCGCTCAAGACGTTAATCGCCGTCAGCCTCC
TCAAGGAGTCAGGGCTACCTGTAAGTGCTGGTGTTGCTCCAGCGGTTTTC
ACTCAAGCGCCCCCCCCCCGCCAAACGCGTGTCACTCAAGTTATTATTTC
AACCAAATGAGTTACCATCGTGCTTAAGAATTATGAACTGGTCGGCAAGC
AGCGGAAGATATGATGCCGTGTGTAGCGAGATGGCGTGTATCGTTCTTTC
ATGGCTTTAATGGTACCCCAATCCAGGCGATGCTGGGCCGTTCCAGCTCG
GTACATGTATTTACGGTCATGCGCTCCCCGGCTATAACCTTACCCCTATG
CTTGCTATTGTCATTTTGTTTTTCGCACTGCGACAGATCCAGGTAGGTTC
TTCTGCCCCCGCTCTGGCACCACAAAGGCTGTGGCGGGGTCCAGGGCTGT
TTACAGCCAGGCCTGCCACCTGGTACTGCCGTTCTTGCATGGGATTACGT
CCCACCCGGCATGGAAGACCCCTGCCATTGTCGATCAACATGCTGTCGTA
AAGGCAGCATACCTCCTCTACAAGGAGGGCGGTGGCGAGCTCAACAAAGC
TCAATTTTCCGGTAAGAACTCTTAATAACCTTTCAGAGCAACATGACCTG
CTTTGTGCAGCCATGGATTCCACTTATTCTCAACGCTTGCTGTGAAGTTT
GGTGCTTCCCGGGAAGACGTGTGGCACATCCTCGATAAGGAGTGTGTAGC
AAGGCCTACACGACGAGTAGACGAGCTTTGCTTTCGCCCCCCCCAGCACA
CACACGCATTTCAAGAAACTTTGGTGGATTTCACAGAGGGTGTTTGGGTG
AACTCACAAATTTGGAGGTTTGCTTTTTTTTTTTTTTCAACCCATCAATC
GGTCGCCCCTGTATTACTTCGCACAGCCGCTTTCAGTAAGTAAGAGTAGT
GATTTCGTTTGTCTGTTTAATGCTCATTTGCCGCTATTGCCCCTTTCTAT
GCGTCGCGTGCAACCCATCTCGTAGAGCGCTTGGTTCGCTCGGTAATTCC
CATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACA
CCAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAG
CCTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAA
CCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1347:17853..19506-

>mRNA_P-littoralis_Contig1347.2.3 ID=mRNA_P-littoralis_Contig1347.2.3|Name=mRNA_P-littoralis_Contig1347.2.3|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1347:17853..19506- (Pylaiella littoralis U1_48)
ATGGCACGTAAGTCCAAGAACATGCCGAATGAGGACGTCGCCGCGTACTT
CATGATAGAAGTGGGGCAGACGTGGTCTCCGCCGCTCAAGACGTTAATCG
CCGTCAGCCTCCTCAAGGAGTCAGGGCTACCTATCCAGGTAGGTTCTTCT
GCCCCCGCTCTGGCACCACAAAGGCTGTGGCGGGGTCCAGGGCTGTTTAC
AGCCAGGCCTGCCACCTGGTACTGCCGTTCTTGCATGGGATTACGTCCCA
CCCGGCATGGAAGACCCCTGCCATTGTCGATCAACATGCTGTCGTAA
back to top