mRNA_P-littoralis_Contig1344.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1344.1.1
Unique NamemRNA_P-littoralis_Contig1344.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1344.1.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 1.250e-107
Identity = 195/397 (49.12%), Postives = 267/397 (67.25%), Query Frame = 1 
Query:  106 AEAVGMKKLLGTYFICEMRVPVAKLIKTSIGRELRSAGVNHLKECIERDGFLEQFAPVVSLMKPLSDGESLEDVMPVEGFKLKIIDGNHRVKALELIDGE-KGTATS-INCRVHGVMSPSAERMVAAGFNRVSSSVVETLLIDDVVWYRAVIAAIQQAHTGQN-LTEKQL-----------SLSPPAPATLKKWICLSLKITDLGLDAMKDVSYLPGRGPKHPDHKVLDHKRVTLKMLCRERFHDMNPYEQEVYVFRLAKGSITSHKILSEEECGMLDKTAVNVGLEVERLEAIVPRAGWSSDLREGMRKLIATGLCSKYFIHHDGLIRLVETYEKELPEGMDASEAHVAMLRGQLHITTEKLLKEDGQMQTQWKAYEAEKKIIEQKAISDKATFIQ 1254
            A  VG+ KLL  +++   RV +  L  TSIGR  R AG+  LK+ IE DGF E +AP+V L+ PL   +SL  V+     KL++IDGNHRV AL+ ID E K T+   I+ RVH  M  + ERMVAAG NR+SS+VV+TLL+D+VVWYR+VI A+Q+ H G   +T  Q+           S   PA  TLKKWI ++L IT  GL+A++D+SYLPGR P HPD   LD+KRVTLK++ R +F  MN ++QE YV+RLAKG+IT++K L++E+C  LD TA  +  E+ER+E+I+PRA WS   + GMRK++  GL S+Y+ H  GL   VE Y+K LPE M+ S+ H+ ML  + H +T  LL++D +M+ +W+AY   KK IEQ ++SDKA F+Q
Sbjct:   10 ASTVGISKLLAKFYLGSHRVSIRGLELTSIGRAQRQAGIVALKKHIESDGFDESYAPIVCLVNPLPQEQSLGTVLAAGDIKLRVIDGNHRVAALQQIDEETKPTSPRVISVRVHQPMPQATERMVAAGCNRISSNVVKTLLVDEVVWYRSVIHALQEQHQGSTAMTNDQILKAIKKDFANQSQKAPANQTLKKWIGIALNITPYGLEALRDLSYLPGREPNHPDLTSLDYKRVTLKLVERTKFQGMNKWQQEAYVYRLAKGAITTNKQLNDEQCKTLDSTAETIAQEIERVESIIPRAEWSEGFKRGMRKVMIGGLQSRYYGHLIGLQTNVEAYKKTLPEKMEVSKDHINMLLREPHAST--LLQDDPEMKPKWEAYAKGKKDIEQTSVSDKADFVQ 404
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1344.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE1.250e-10749.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1344contigP-littoralis_Contig1344:1252..4018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1412
Hectar predicted targeting categoryother localisation
Exons5
Cds size1410
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.0318942-CDS-P-littoralis_Contig1344:1251..17321680789619.0318942-CDS-P-littoralis_Contig1344:1251..1732Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 1252..1732 +
1680789619.0418012-CDS-P-littoralis_Contig1344:2314..26751680789619.0418012-CDS-P-littoralis_Contig1344:2314..2675Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 2315..2675 +
1680789619.0616057-CDS-P-littoralis_Contig1344:2890..30281680789619.0616057-CDS-P-littoralis_Contig1344:2890..3028Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 2891..3028 +
1680789619.074464-CDS-P-littoralis_Contig1344:3283..34521680789619.074464-CDS-P-littoralis_Contig1344:3283..3452Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 3284..3452 +
1680789619.0874064-CDS-P-littoralis_Contig1344:3757..40181680789619.0874064-CDS-P-littoralis_Contig1344:3757..4018Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 3758..4018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1344.1.1prot_P-littoralis_Contig1344.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1344 1252..4018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1344.1.1

>prot_P-littoralis_Contig1344.1.1 ID=prot_P-littoralis_Contig1344.1.1|Name=mRNA_P-littoralis_Contig1344.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=470bp
TAPHNQSLALYTFSTTRVPSRSIDNMEAPSSVPAGAEAVGMKKLLGTYFI
CEMRVPVAKLIKTSIGRELRSAGVNHLKECIERDGFLEQFAPVVSLMKPL
SDGESLEDVMPVEGFKLKIIDGNHRVKALELIDGEKGTATSINCRVHGVM
SPSAERMVAAGFNRVSSSVVETLLIDDVVWYRAVIAAIQQAHTGQNLTEK
QLSLSPPAPATLKKWICLSLKITDLGLDAMKDVSYLPGRGPKHPDHKVLD
HKRVTLKMLCRERFHDMNPYEQEVYVFRLAKGSITSHKILSEEECGMLDK
TAVNVGLEVERLEAIVPRAGWSSDLREGMRKLIATGLCSKYFIHHDGLIR
LVETYEKELPEGMDASEAHVAMLRGQLHITTEKLLKEDGQMQTQWKAYEA
EKKIIEQKAISDKATFIQDEMDRSKTAADTDTATAAAAAAAAAAALVGGA
PTSSSSATQPAAATTRTPAS
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mRNA from alignment at P-littoralis_Contig1344:1252..4018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1344.1.1 ID=mRNA_P-littoralis_Contig1344.1.1|Name=mRNA_P-littoralis_Contig1344.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2767bp|location=Sequence derived from alignment at P-littoralis_Contig1344:1252..4018+ (Pylaiella littoralis U1_48)
ACAGCGCCGCACAACCAATCCCTAGCTCTGTACACCTTCTCCACAACACG
CGTGCCCTCTCGATCTATAGACAACATGGAGGCACCATCATCAGTGCCTG
CCGGAGCCGAAGCTGTCGGAATGAAGAAGCTCCTCGGAACCTACTTCATC
TGCGAGATGAGAGTCCCAGTTGCCAAGCTCATCAAGACTAGCATTGGAAG
AGAGCTACGAAGCGCTGGTGTAAACCATCTCAAGGAGTGCATAGAGCGTG
ATGGTTTCTTAGAGCAGTTTGCTCCCGTTGTTAGCCTCATGAAGCCTCTT
AGCGATGGCGAGTCTCTTGAAGATGTAATGCCTGTCGAAGGCTTCAAGTT
GAAAATTATCGATGGAAACCACCGAGTAAAAGCGTTGGAACTGATTGATG
GAGAGAAGGGAACCGCCACCTCCATTAACTGCCGCGTCCACGGAGTCATG
TCACCTTCCGCGGAGCGCATGGTCGCAGCAGGTGAAGCGTTCTGCAAATG
TGCTGTCATGTTATCTACCATTCATTGCAGATGCCAACCTACACCGTCGA
GTACATGCGTGCTTGGGTTGACTTTGTGTGGCAAACGAAATCCGTTCTCC
TCTTTTTGCTCCGAGTTCGTTCTGAAATTTTCCGATGCAGTACGTGCATA
TCTCCAGATAGATGAGGATCTATCATACTGTAGATCACGTTGTTGTGCCC
ACAAGATAATATTTTTACACACGACGTCGCGGCCGAAGTTTTGTGATACT
TCGTACAACACGACATTTTCCAGTCAGACCCTGTTGTTGTGTTGTTTCCT
GAATACGTAGTACAAGCCAAAAATCACGAAGTACAAAATTAGAACCCGCT
GCCAAAGAACAGGCCCATCCAGCATGCCTCCGATGAGAGATGTTTGGTTG
CTTGATTCTCACATTAGCTCATCGAAATGTGCTCCTGCCGGAAGCTACCC
TAATTTTTGTATTACGATAGTGATATTTCTGCTCTTCCCAAAGCTTTCAC
TCTGTGTCTGACAGACATCATATGTTTGATACTTGCCTCTGTTGTTGCTA
TTCTGTTGCACAGGGTTCAACAGGGTCTCTTCGAGTGTCGTGGAGACTTT
GCTCATTGACGACGTCGTCTGGTATAGAGCTGTTATTGCTGCGATTCAGC
AAGCCCATACCGGCCAAAACCTCACAGAAAAACAGCTAAGCCTAAGCCCG
CCCGCACCAGCGACTCTGAAAAAGTGGATCTGCCTGTCGCTGAAGATCAC
CGACCTTGGCCTCGACGCGATGAAGGACGTGAGCTACCTTCCCGGTCGGG
GCCCCAAGCACCCTGACCACAAGGTCCTCGATCACAAGCGCGTGACGTTG
AAGATGCTCTGCCGCGAGCGTTTTCACGACATGAACCCCTACGAGCAGGA
GGTTTACGTTTTCCGACTCGCAAAGTGTGGCGCGCACGATATACATAATT
GTTTTGTGACTTTCATGTGCGGCCGCTGCTTTGTATTTAACACAGAACAC
TAAAATAGATCAAGTACATACAGCAGTTTCGAACGGTCATTCGCAAAACA
CATGAGTTCAACACGTCGTCGACAAGCATATGCAATAAATTGAACACGTG
CGCTATGTATCTCCAACGTCGCCTCTGTTTGTTTCCCAGAGGAAGCATAA
CGTCTCACAAGATTCTGAGCGAAGAAGAGTGCGGAATGCTTGACAAAACC
GCGGTTAATGTTGGGCTCGAGGTCGAGAGGCTCGAGGCAATCGTTCCGCG
TGCTGGGTGGTCGTCGGACCTCCGCGAGTAAGTGCCTTTATTGAGTAGTT
TGAATTTTTAGCTTTCGACAGCATATGCCATATATTTCTGTGCGTGTCGT
GCTTTTTTTGCTTTCGAAAGCGGGTGTTTTGAAAGAGAAGGAATATCAAT
ATTTCGTACCACACTCCAGCGCGTTTGATATTTTTTCTCTTTGTTTTTCT
CATGACAATTTGTCGATGTTTCGCCCACTCTTCGATGGCCATCTTTTGAA
GTTCGTCCTTTGCCTTTCTTTCCGCTTTGAAGGGGGATGAGGAAGCTTAT
CGCGACGGGGCTTTGTTCGAAGTATTTCATTCACCATGACGGGTTGATCC
GGCTGGTCGAGACGTACGAGAAAGAGCTCCCGGAAGGAATGGATGCTTCC
GAAGCGCATGTCGCCATGCTTCGTGGGCAGCTGCACATCACCACCGAGAA
GGCAAGCAGACTTGTCGTTTTGGATAGGTTGTGAACAGCGCCTTTTTCCC
ATCGTTGCCAACTTTTATAGCGCCAGCCAATCCCATCAACTCTGCACAAA
CAGTTGAGGATAATGTAAAACCCACGGGCTGTATGGCTTTTTGAACGGAC
CAAAAACGTTTTGCTACCAGCAACATTATTATTGTTTTCTGCCCGCAATC
AATATAACTACCCAATGAGTTCTCCCGTGATGATAACACGTTCCTCCTCT
CTCATACCCCTGCCTCCCTCCCCTCTCCCTTCTCGGTATGTGTTCGTTGT
GAAAAGCTTCTCAAGGAAGATGGTCAAATGCAGACTCAGTGGAAAGCGTA
CGAGGCGGAGAAAAAGATCATCGAACAGAAAGCTATTTCAGACAAGGCGA
CGTTCATCCAAGACGAGATGGATAGGTCCAAGACGGCCGCTGATACTGAT
ACCGCAACCGCCGCCGCAGCCGCCGCAGCCGCAGCTGCAGCTCTTGTGGG
CGGAGCTCCGACCTCTTCATCGTCAGCAACGCAACCTGCAGCAGCGACCA
CACGCACTCCCGCATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1344:1252..4018+

>mRNA_P-littoralis_Contig1344.1.1 ID=mRNA_P-littoralis_Contig1344.1.1|Name=mRNA_P-littoralis_Contig1344.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1410bp|location=Sequence derived from alignment at P-littoralis_Contig1344:1252..4018+ (Pylaiella littoralis U1_48)
ACAGCGCCGCACAACCAATCCCTAGCTCTGTACACCTTCTCCACAACACG
CGTGCCCTCTCGATCTATAGACAACATGGAGGCACCATCATCAGTGCCTG
CCGGAGCCGAAGCTGTCGGAATGAAGAAGCTCCTCGGAACCTACTTCATC
TGCGAGATGAGAGTCCCAGTTGCCAAGCTCATCAAGACTAGCATTGGAAG
AGAGCTACGAAGCGCTGGTGTAAACCATCTCAAGGAGTGCATAGAGCGTG
ATGGTTTCTTAGAGCAGTTTGCTCCCGTTGTTAGCCTCATGAAGCCTCTT
AGCGATGGCGAGTCTCTTGAAGATGTAATGCCTGTCGAAGGCTTCAAGTT
GAAAATTATCGATGGAAACCACCGAGTAAAAGCGTTGGAACTGATTGATG
GAGAGAAGGGAACCGCCACCTCCATTAACTGCCGCGTCCACGGAGTCATG
TCACCTTCCGCGGAGCGCATGGTCGCAGCAGGGTTCAACAGGGTCTCTTC
GAGTGTCGTGGAGACTTTGCTCATTGACGACGTCGTCTGGTATAGAGCTG
TTATTGCTGCGATTCAGCAAGCCCATACCGGCCAAAACCTCACAGAAAAA
CAGCTAAGCCTAAGCCCGCCCGCACCAGCGACTCTGAAAAAGTGGATCTG
CCTGTCGCTGAAGATCACCGACCTTGGCCTCGACGCGATGAAGGACGTGA
GCTACCTTCCCGGTCGGGGCCCCAAGCACCCTGACCACAAGGTCCTCGAT
CACAAGCGCGTGACGTTGAAGATGCTCTGCCGCGAGCGTTTTCACGACAT
GAACCCCTACGAGCAGGAGGTTTACGTTTTCCGACTCGCAAAAGGAAGCA
TAACGTCTCACAAGATTCTGAGCGAAGAAGAGTGCGGAATGCTTGACAAA
ACCGCGGTTAATGTTGGGCTCGAGGTCGAGAGGCTCGAGGCAATCGTTCC
GCGTGCTGGGTGGTCGTCGGACCTCCGCGAGGGGATGAGGAAGCTTATCG
CGACGGGGCTTTGTTCGAAGTATTTCATTCACCATGACGGGTTGATCCGG
CTGGTCGAGACGTACGAGAAAGAGCTCCCGGAAGGAATGGATGCTTCCGA
AGCGCATGTCGCCATGCTTCGTGGGCAGCTGCACATCACCACCGAGAAGC
TTCTCAAGGAAGATGGTCAAATGCAGACTCAGTGGAAAGCGTACGAGGCG
GAGAAAAAGATCATCGAACAGAAAGCTATTTCAGACAAGGCGACGTTCAT
CCAAGACGAGATGGATAGGTCCAAGACGGCCGCTGATACTGATACCGCAA
CCGCCGCCGCAGCCGCCGCAGCCGCAGCTGCAGCTCTTGTGGGCGGAGCT
CCGACCTCTTCATCGTCAGCAACGCAACCTGCAGCAGCGACCACACGCAC
TCCCGCATCG
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