mRNA_P-littoralis_Contig1342.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1342.1.1
Unique NamemRNA_P-littoralis_Contig1342.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 796 bits (2057), Expect = 2.780e-275
Identity = 407/687 (59.24%), Postives = 502/687 (73.07%), Query Frame = 1
Query:   10 GKEPLRTIRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSKRTIDHMVSMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHV---TREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRL 1953
            GK PLRT+R+Q+R LR ++P DSI+LMGDFNR+R  V++W       I+V EL  KDA+LGTR+HGSKR IDH+++ +AHP+D LR PRV+RKVDISDHYP+VSTFRSDRADA+T       D +GV +   T + G+  RI    +PMPG++WY++ G RG+ NHQ+++H+ YW PL DL+EEG  +L   D  A+ DAAA+RMV+ + QVA+    TK    +R PALK  IARAIDDRG++YR A++ R +      AW  Y E +  AERLVR+DRR+ WTKAL TAS Q+R+DPKA W F S VAGWKRKD+  GLQPV+HPD+  L+T A DISA+W+THY+RLA+DVTGNSR  D+W  W AAPQR H+  LD PI   E+ EAL R+KRHK+ G DG+PADFL+LA G+ G++SPM K +LG+LNL+WK ++IP + ++STVV IPKKGD+ DMNN+RGISLM+TVLKVLVMIISTRLN  FE H LFS +QAGFR +EECVTQAACLLEI QRRK +RK+ +LMFVDLKKAYDTVP EALFAKL FYGV                                    QGCPLSPVLFNIFINDILDG E+LGVP  GN +ER  R+ GLLFADDLV I+ TR +LA + D ++ W+ ENEMSAGIHKCGVMAIG   RRL
Sbjct:  126 GKVPLRTVRNQMRDLRVKYPNDSIILMGDFNRLRPRVEQWFNCAYESIRVWELTGKDADLGTRDHGSKRVIDHIMTSLAHPQDTLRAPRVLRKVDISDHYPVVSTFRSDRADAST------GDSVGVPINARTIQRGE--RINTGLIPMPGTHWYQESGPRGRANHQKVIHANYWEPLADLIEEGNEELSPEDTTALVDAAASRMVEASHQVARECGQTKDSSTQRAPALKPQIARAIDDRGRLYRAAKRLRKNSPRAKVAWERYHEARMKAERLVRKDRRRAWTKALCTASEQLRSDPKAAWHFMSAVAGWKRKDSSGGLQPVQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIGHGRRRL 804          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 295 bits (754), Expect = 1.240e-82
Identity = 240/755 (31.79%), Postives = 344/755 (45.56%), Query Frame = 1
Query:    1 GRAGKEPLRTIRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSKRTIDHMVS----MMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQR-----NHQRMVHSTYWTPLLDLLEEGE-GDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAA-----------------YEETKKTAERLVRQDRRKTWTKALQTASAQMRTDPKAFWKF----------------SSDVAGWKRKDTGS---GLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVK-WTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAG-------DVGTES------PMAKALLGILNLMWKYQIIPEEWQDSTVVSIPK-KGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEH-NLFSHA-QAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV---------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRLSS 1959
            G+   E L  + SQL+ L  QFP   +V++GD+N    E+ + L R   P+    +    A   T     +  IDH V     M  H   H  R RV R  D+SDH+PL+             A  P         +  +G    IE          W R G +R  R     + Q +VH  +W PL  L+++ E  DLD        D AA R+V T  +VA+   +  L++   +P    S   A    G+    + +TR   A + A +                   Y  T+  A+  VR++ R +W K +Q     +R D K  W++                 S  AG+    +       QP+KHP +  ++T   +I+ +W  ++  LA D TG+      W +  ++ P  P L  L+ P+   E+  ALL +K  KA G DG+ ADFLKL  G       D G ++      PMA  L  +L  MW  + +P  W  + VV I K +GD  +M NYRGISL+  VLK+L  II+ RL    ++  N   H  QAGFR +EEC+     L E+ +RR++ +  ++L F+DLKKAYDTVPH ALF KL+  GV                                       QGCP+SP+LFN+FINDI+D    LGV V G  + R T + GLLFADDLV ++   ++L Q  D +T W  + EM  G+ KC +M I +    LSS
Sbjct:  272 GKRRTEVLHLLLSQLKALLRQFPSTPLVVLGDWNMREQELAKLLARWHLPLARASVCGNPATTHTPRLRPRSAIDHAVYRTDIMRTH---HQLRCRVDRSWDLSDHWPLLVRCLYHNLHQQEHAPSP---SXXXXXSYSKGTCSDIEQG--------WVRVGRMRPLRLLSEDSKQELVHHNFWNPLRALMDQEEDSDLD-------VDDAAKRLVSTIQRVAQECHI--LKDAGERPPAGKSHTSAASSTGRAAHLSHRTRSLIARKRALFLKLQRIPHGSERWERTMREYLSTRHAAKTAVRKENRVSWLKYVQRGCMAVRGDCKRHWQWIRSLIRSSSSSSCTLPDSHQAGFSSCSSSVIDISRQPIKHPHSKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNPMAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAPLRRGLRQGCPMSPLLFNVFINDIIDEIRELGVHVPG--LPRSTTLGGLLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSS 1001          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 273 bits (699), Expect = 2.890e-76
Identity = 222/698 (31.81%), Postives = 320/698 (45.85%), Query Frame = 1
Query:   16 EPLRT-IRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAEL---GTREHGSKRTIDHMVSMMAHPEDHLRRPRVI---RKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRR-ARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTDP--KAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDV-TGNSRSPDQWVKWT----AAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV---------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGN----NVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIG 1935
            EP R  +R +L +LRE+FP+D+IV+ GD+N    ++D  LRR         +  +DA     GT   GS R IDH V+        L  P  +      D SDH+P+              A  P   G             R+   ++P P             R+           P  D   EG    +     A AD     +  TA +V     V++ R     P L+ SI  AI  R   +    ++ RG    ++ A   Y   +   + +VR +RR+   +A+  A    R     + FWK++  +A      +    QPV  P +GVL T   +I+A W  HY  L  D      R+      W       P  P L  ++ PI   EL +AL RL  +KASG DG+ A+ LKLA      +SP  K+LL ++N +W  + +P++W  S VVSI KKGDV  M+NYRGIS+M  ++K+L+ +++ RL +  + + L    Q GF   EEC  Q A + +IA RR+     T+  F+DL+KAYDT+PHE LF+KL+  G+                                       QGCP SP+LFNIFINDI DG E LG  V G     +  +  RV G LFADD V +A + + L  +    ++W +++ M  G+ KCGVMA+G
Sbjct:   23 EPYRCRLREELAQLREKFPRDTIVVGGDWNLDEAQLDALLRRWRCVPDAKTIWPRDASARVRGTCRRGSCRVIDHFVAWPPVMGPSLSFPHSVFVDYSWDTSDHFPVF-------------ASVPRLVGDSFEHPHPPLMLERLSVRSIPKPARGDPPSEWPTPFRDFVTANPFAILAPPNDEPMEGAMSREPDSIDADADGFVQAVWSTARRVGA---VSRTRRKSLGPPLQRSILGAIARRRHAFLALCQEARGPI--QSVALDRYIAARLRVKNMVRTNRRRQKARAIDKAINDFRQGGGRRGFWKWARSIAKGHPTQSNRAEQPVHDPTSGVLHTEPGEINACWARHYRELLRDPHPAACRATIYHEAWERRRGGRPPSPALDGINGPIGGGELCKALKRLNNNKASGVDGITAETLKLAI--YAPDSPFGKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMALG 700          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 249 bits (637), Expect = 4.410e-67
Identity = 205/678 (30.24%), Postives = 310/678 (45.72%), Query Frame = 1
Query:   43 LRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSK--RTIDHMVSMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKR--KPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTD-PKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRL 1953
            LR++R++  +  I+L+GDFN+        L R    ++   +R      G+R +G+   R IDH ++    P +     +VI+ VD+SDH P+V+ +                                +E   +P P     RK  +   +       S     +LD LE    DL E   + +  AA                ++ ++E K+  K  L      AI  R K+++      G   N + +   Y   K+ A    R DRR      ++ A   M T+ P+  W +    +G   +   S +          L+TG  + S +W  H+E LA D TGNSRS ++W       +  +    D  +T  E+  AL     +K+ G DG+P++  KL   +    SP AK    ++N +W+ + IP++   S +V IPKKGD+ D NNYRGISL+ T+ KVL  II+ RL++   +H++    QAGFR +EECV QA  L E+ +RRK+   +T++ F+D  KAYD VPH+AL  K+   G+                                    QGCP SP+LF+IFIND+LDG +  GV V G + E    + GLLFADD V +A +   L    ++LT W  + EM     KCG+M I  ST  L
Sbjct:  771 LRKMRQKKKKSKIMLIGDFNKDTESTISMLNRIGIGLRRATVRNSK---GSRMNGAVMGRMIDH-ITYSGFPNNPTYA-KVIKSVDLSDHLPVVAEWD-------------------------------MEALKIPAP----QRKIDVERIKEVGVSFVSINRFAILDQLENDIEDLAENTAEEIWRAA--------------DELSCIKEEKQRFKTVLSKETLNAIQRRRKLFK------GISKNPSLS-EEYSNLKEKANEHCRADRRSNKVAEVKKARELMLTNKPRELWSWLKRYSG---RFLSSLIDGPIFDKNRKLVTGHEEKSEAWAAHFEELAKDSTGNSRSAEKWSNMGLGSEAVY-TECDAILTWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGIGGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLDGIK--GVKVPGIDTE----IPGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGIMGINSSTGML 1377          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 244 bits (623), Expect = 1.160e-66
Identity = 144/426 (33.80%), Postives = 219/426 (51.41%), Query Frame = 1
Query:  784 WAAYEETKKTAERLVRQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRR 1950
            W ++EE    A++  ++DR++   K L     + ++   K  W +   +A  +R       +PV   D   L+ G  +I  +W++H+E+L+ D  G S+  + W K    P    L   D+PIT  E+  AL    + KA+G DG+P +F K+   D   ESP    +  ++  ++    +PE+W ++ +V +PKKGD+ +M+NYRGISL++T+ K +V II+ +LN     + +    QAGFRK EEC+ Q  C  EI +RR L+ K T  +F+D KKAYD VPHE LFAKL  YG                                     QGCP SP LFN++IN+IL+G   +G+   GN  +    V GLLFADD V  A + + +    + L  W  + +M   I KCG+M    + +R
Sbjct:   93 WLSHEELTDQADKQKKRDRKENKRKYLMRGIKSFLQNRSKIHWNWLKTIARKRRPFV---AKPVIDRDKNELVFGTKEIGEAWRSHFEKLSKDDDGFSKDREYW-KTVIEPAAQTLKGCDDPITWEEVLRALEHSSKGKATGTDGIPIEFYKVLQRDKNRESPFGNFVFQLITEIYAQAKVPEQWNEAMIVPVPKKGDLHNMDNYRGISLINTLCKEVVKIITEKLNRICTTNKILRDEQAGFRKLEECIAQTTCFYEIVKRRSLKGKPTMALFLDFKKAYDKVPHEGLFAKLRGYGFSGRILDFLIELYRNPKASVRIGDERSDTFNYQMGVKQGCPASPTLFNLYINNILEGITGVGI---GNGEQ----VPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMVFNSNEQR 507          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG)

HSP 1 Score: 248 bits (632), Expect = 1.420e-66
Identity = 202/681 (29.66%), Postives = 315/681 (46.26%), Query Frame = 1
Query:   43 LRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSK--RTIDHMV--SMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPI--RIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKW-TAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRL 1953
            LR+LR +  +D I+L GDFN+        L R    ++   +       G+R +G+   R IDH+    ++ +P       +V++ VD+SDH P+++ +  +  D+ T     V   I V   +E G+        AAL  P                                   E ++++L          +R+    ++ A+     K+ +      L     +A + R K ++R     GD    T     Y + K+ +  L R DRR      ++ A    +    +  W +    +G  R     G  PV + D   L+T     +  W TH+E+LA D TGNSRS D+W    T A   P     D P++  E+ +AL     +K+ G DG+P++  KL   ++   SP+AK +  I+N +W  + +P++   S VV IPKKGD+ D NNYRGISL+ T+ KV+  I++ RL     ++ + +  QAGFR +EECV QA  L E+ +RRK+   +T++ F+D  KAYD VPH+AL  K+   G+                                    QGCP SP+LF+I+IND+L G +  GV + G     +  +SGLLFADD V +A +   L    ++++ W Q+ EM     KCG+M I  STR L
Sbjct:  324 LRKLRIKGRKDKIMLAGDFNKNTDSTVALLNRIGIGLRRATVTNSK---GSRMNGATMGRMIDHISFSGLINNPN----YTKVLKSVDLSDHLPVMAEWNIEALDSPT-----VPRKINVESIKELGESFVSNNRFAALTEP-----------------------------------EFNIEDL---------TSRLTKGIWESAEEVNAIKIEKISNSTVLSKETIKATNKRRKAFKR---LIGDPRTATE----YSDLKEKSIELCRLDRRNNRKAEVRKACDLMLGNKSRDLWSWLKRFSGRFRSSLIDG--PVYNNDH-KLITDTDAKAEVWATHFEKLAKDSTGNSRSADKWKNMGTIAAVFPEC---DAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGGKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLK--GVEIPGT----EAMISGLLFADDAVVLAESPAELQIALEKISAWSQKWEMQINQEKCGIMGINSSTRML 929          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A1R1YD24_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YD24_9FUNG)

HSP 1 Score: 234 bits (598), Expect = 9.340e-64
Identity = 191/674 (28.34%), Postives = 303/674 (44.96%), Query Frame = 1
Query:   52 LREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIK-VMELREKDAELGTREHGSKRTIDHMV--SMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRL 1953
            LR +  +D I+L GDFN+        L R    ++  M    K + +     G  R IDH+    ++ +P       +V++ VD+SDH P+++ +  +  D+ T         I V + +E G+                               V    +  L +L    E ++++L          + + +  ++ A+     K+ +      L     + I+ R K ++R     GD          Y + K+ +  L R DRR      ++ A    +    +  W +    +G  R     G  P+ + D   L+T     +  W TH+E LA D TGNSRS D+W      P        D P++  E+ +AL     +K+ G DG+P++  KL   +    SP AK    I+N +W  + +P++   S VV IPKKGD+ D NNYRGISL+ T+ KV+  I++ RL     ++ + +  QAGFR +EECV QA  L E+ +RRK+   +T++ F+D  KAYD VPH+AL  K+   G+                                    QGCP SP+LF+I+IND+L G +  GV + G     +  +SGLLFADD V +A + + L    ++++ W Q+ EM     KCG+M I   T  L
Sbjct:    1 LRTKRRKDKIILAGDFNKNTDSTVALLNRIGVGLRRAMVTNSKGSRMNGATMG--RMIDHISFSGLINNPN----YAKVLKSVDLSDHLPVMAEWNIEALDSPT-----APRKINVELIKEIGE-----------------------------SFVSKNRFAALAEL----ESNIEDL---------TSSLNNGIWESAEELNAIKIEKISISTVLSKETIKVINKRRKAFKR---LIGDPKT----LIEYRDLKEKSIELCRLDRRNNRKAEVRKACDLMLGNKSRELWSWLKRFSGRFRSSLIDG--PIYNNDN-KLITDTNAKAEVWATHFEELAKDSTGNSRSADKWENIGTIPAV--FPECDAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEKEPTSPFAKVTSRIINGIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGDKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLK--GVEIPGT----EATISGLLFADDAVVLAESPSELQIALEKISAWSQKWEMQINQEKCGIMGINSCTGML 603          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG)

HSP 1 Score: 238 bits (607), Expect = 1.480e-63
Identity = 193/677 (28.51%), Postives = 303/677 (44.76%), Query Frame = 1
Query:   43 LRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSKRTIDHMVSMMAHPEDHLRRP---RVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRL 1953
            LR+LR +  +  IVLMGDFN+        L R    ++  ++       G+R +G   T+  M+  +A+    L  P   +V++ VD+SDH P++S +  +      P                   P RI+ A +   G               +  + +  ++ L D          + + + + D+  T + +TA ++       K    + +  L       I  R KM+++  K    +         Y + K+ A +L R+DRR      ++ A    +    +  W +    +G  R     G  P+   +   L+T +   +  W  H+E LA D TGNSRS ++W               D P++  E+  AL      K+ G DG+P++  K    ++   SP AK L  ++  +W  + IPE+   S VV IPKKGD+ + NNYRGISL+ T+ KV+  II  RL +   ++++ +  QAGFR +EECV QA  L E+ +RRK+   +T++ F+D  KAYD VPHEAL  K+   G+                                    QGCP SP+LF+I+IND+LDG + + +P     +       GLLFADD V +A +   L    ++LT W  + EM     KCGVM I  ST  L
Sbjct:  125 LRKLRSKKRKAKIVLMGDFNKDTNSTISMLNRIGIGLRRADVNNSK---GSRMNGV--TMGRMIDHVAY-SGFLNSPNYAKVLKSVDLSDHLPVISEWNIESLKTPVP-------------------PKRIDTAKMKEIG---------------ESFISNNRFSVLAD---------QDSNTENLVDSVTTSIWETAEELD----ALKTTPSEYRRVLSNETLETIRKRRKMFKKLAKDPSIEME-------YSDLKEKAIQLCREDRRNNRKAEVKKACDLMLGNKSRELWSWLKRFSGRFRSSLVEG--PIFDKNK-KLVTESEKKAEVWAAHFEELAKDSTGNSRSAEKW-HGMGNDSAGVFTECDTPLSWDEICAALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPFAKVLFRLIKEIWDTESIPEQLDASVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIVRRLGKIDNKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRAGGIGGKVHRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFDIYINDLLDGIKGVKIPGIDKGIP------GLLFADDAVVLAESPAELQIALEKLTAWSLKWEMQINQEKCGVMGINSSTGML 731          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 236 bits (601), Expect = 7.860e-63
Identity = 192/680 (28.24%), Postives = 311/680 (45.74%), Query Frame = 1
Query:   31 IRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIK-VMELREKDAELGTREHGSKRTIDHMV-SMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRL 1953
            + + LR+LR +  +  I+L+GDFN+        L R    ++  +    K + +     G  R IDH+  +  A+  ++ +   V++ VD+SDH P+++ +                                IE   +P+P     R    + ++   R +    +  L  L         E + + + ++  T + +TA ++       K  +   +  L       I  R K++++  K         +    Y E K+ + +L R+DRR      +  A    +    +  W +    +G  R     G  P+ +     L+T +   +  W  H+E LA D TGNSRS ++W +   +         D P++  E+  AL     +K+ G DG+P++  KL   +    SP AK LL ++N +W  + IP++   S VV IPKKGD+ + NNYRGISL+ T+ KV+  IIS RL +   ++N+ +  QAGFR +EECV QA  L E+ +RRK+   +T++ F+D  KAYD VPH+AL  K+   G+                                    QGCP SP+LF+IFIND+L G +  GV + G + E    ++GLLFADD V +A +   L    ++L+ W  + EM     KCG+M I  ST  L
Sbjct:  143 LTNYLRKLRSKKKKTKILLVGDFNKDIKSTVSMLNRIGIGLRRAVVSNSKGSRMNNATMG--RMIDHVAYTGFANNPNYAK---VLKSVDLSDHLPVIAEWN-------------------------------IESLKIPLPPK---RIDTEKMKKQGTRFISDNRFAVLASL---------EPNTENLVNSVTTSIWETAEELD----ALKTMKAGYRRVLSNETLETIRKRRKVFKKLSKD-------PSLAIEYSELKEKSIQLSREDRRNNKKAEVNKACDLMLGNKSRELWSWLKRFSGRFRSSLVDG--PIFNKSR-QLVTDSETKAEVWAAHFEELARDSTGNSRSAEKW-RDIGSDSTEVFTECDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLGGIK--GVKIPGIDTE----IAGLLFADDAVVLADSPAELQIALEKLSAWSHKWEMKINQEKCGIMGINSSTGML 753          
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Match: A0A1R1XKG1_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XKG1_9FUNG)

HSP 1 Score: 233 bits (593), Expect = 2.070e-61
Identity = 143/414 (34.54%), Postives = 217/414 (52.42%), Query Frame = 1
Query:  829 RQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQR--PHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV------------------------------------QGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGLLFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRRL 1953
            R+D +K   + ++ A    +  +P+  W++    A  KR +  S   P+      ++  G  +    W  H+E LA DV+GNS+  D   KW    QR   +    D+ IT  ++  A+     +KA G DG+P++  KL   +   ES ++K L+ +L  MW    IPE +  S +V IPKKGD  D NNYRGISL+ T++K+L  I++ +LNE   ++NL    QAGFR +EECV+QA  L E+ +RRK++   T++ F+D  KAYD VPHEAL +KL    +                                    QGCP SP+LF++FINDIL+  + + +P          ++ GLLFADD V  A + + L    +R+++W ++ EM     KCGV+ IG ST+ +
Sbjct:  795 REDYKKKSNREIKKACKLYLENNPRFLWRWLKYQA--KRFNASSIDGPIFDRHRNIVTDGL-EKEKVWADHFEELAKDVSGNSKCAD---KWGEIEQRHNEYYEECDKNITWDDIRRAIKVTPNNKAPGIDGIPSELWKLVQEEKNPESYLSKLLVELLLKMWNSAHIPEIFNTSIIVPIPKKGDPRDTNNYRGISLIPTLVKILAKIVAQKLNELDFKYNLLVKEQAGFRSREECVSQATVLYEVVRRRKIKGIPTWIGFIDFAKAYDRVPHEALLSKLKSQKIGGQLHRVISALYKSPRICVRVGNSISRKFEYSRGVRQGCPASPMLFDLFINDILENIKGINIPTINK------KIKGLLFADDAVVFADSPSELQIAFERVSEWAEKWEMQVNASKCGVIGIGQSTKMI 1196          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1342.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE2.780e-27559.24Reverse transcriptase domain-containing protein n=... [more]
A0A3M2C3P5_9GAMM1.240e-8231.79Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO2.890e-7631.81Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A1R1YP44_9FUNG4.410e-6730.24LINE-1 retrotransposable element ORF2 protein (Fra... [more]
L7JX89_TRAHO1.160e-6633.80RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1R1X7T5_9FUNG1.420e-6629.66RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YD24_9FUNG9.340e-6428.34RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1X4V9_9FUNG1.480e-6328.51Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R1YAQ4_9FUNG7.860e-6328.24RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1XKG1_9FUNG2.070e-6134.54RNA-directed DNA polymerase from mobile element jo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1342contigP-littoralis_Contig1342:11724..13792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45157.CMT010CT
PFAMsDUF4283,Exo_endo_phos_2,RVT_1
Model size1961
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3e-47
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size1959
COG categoryE
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1342.1.1prot_P-littoralis_Contig1342.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1342 11724..13790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.7686188-CDS-P-littoralis_Contig1342:11723..133961680789618.7686188-CDS-P-littoralis_Contig1342:11723..13396Pylaiella littoralis U1_48CDSP-littoralis_Contig1342 11724..13396 +
1680789618.7787662-CDS-P-littoralis_Contig1342:13504..137901680789618.7787662-CDS-P-littoralis_Contig1342:13504..13790Pylaiella littoralis U1_48CDSP-littoralis_Contig1342 13505..13790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1342.1.1

>prot_P-littoralis_Contig1342.1.1 ID=prot_P-littoralis_Contig1342.1.1|Name=mRNA_P-littoralis_Contig1342.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=653bp
GRAGKEPLRTIRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYP
IKVMELREKDAELGTREHGSKRTIDHMVSMMAHPEDHLRRPRVIRKVDIS
DHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMP
GSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADA
AATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARK
TRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTDPK
AFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERL
ASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKA
SGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTV
VSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQ
AGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALF
AKLDFYGVQGCPLSPVLFNIFINDILDGTETLGVPVSGNNVERKTRVSGL
LFADDLVAIASTRNRLAQLGDRLTKWLQENEMSAGIHKCGVMAIGVSTRR
LSS
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mRNA from alignment at P-littoralis_Contig1342:11724..13792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1342.1.1 ID=mRNA_P-littoralis_Contig1342.1.1|Name=mRNA_P-littoralis_Contig1342.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2069bp|location=Sequence derived from alignment at P-littoralis_Contig1342:11724..13792+ (Pylaiella littoralis U1_48)
GGGAGGGCGGGGAAGGAACCGCTGCGGACTATTCGATCGCAACTACGACG ACTACGGGAGCAATTCCCGCAGGACTCCATTGTGCTCATGGGGGATTTTA ACCGGGTCCGTACCGAGGTGGACCGGTGGCTACGCCGAACACCTTACCCG ATCAAGGTAATGGAGCTCAGGGAGAAGGACGCCGAACTGGGAACGCGCGA GCATGGATCCAAGCGGACGATTGACCACATGGTGTCCATGATGGCGCACC CCGAGGATCACCTCAGGCGTCCTCGGGTGATCAGGAAGGTGGACATATCC GACCACTACCCGCTGGTCAGCACGTTTAGGAGCGACCGGGCCGATGCGGC CACTCCGGCCGGCTTCCCAGTTGCCGACGGCATAGGTGTCCATGTCACAC GCGAGGAGGGCCAGCCCATCAGGATAGAATGCGCAGCATTACCGATGCCA GGATCGTACTGGTACAGGAAAGGAGGGATCCGGGGGCAGAGGAATCATCA ACGCATGGTACACTCTACGTACTGGACTCCCCTCCTAGACCTCCTCGAGG AAGGCGAGGGGGATCTTGATGAGCTGGACCGACAAGCTGTGGCAGATGCC GCGGCAACACGCATGGTGGACACGGCCTTCCAGGTCGCCAAAGCCCACCG CGTTACGAAACTAAGGGAACCCAAGCGGAAGCCGGCTCTCAAAGCCTCAA TCGCGCGGGCCATCGACGATCGAGGGAAGATGTACAGGCGCGCCAGAAAG ACCAGGGGAGATGACGCCAATAGGACCGCAGCATGGGCAGCATACGAGGA GACTAAGAAGACCGCCGAACGACTGGTTCGACAGGACCGCCGCAAAACAT GGACGAAAGCGCTCCAAACAGCGAGCGCGCAGATGCGTACTGATCCGAAA GCGTTCTGGAAATTCTCCTCGGATGTCGCTGGGTGGAAACGCAAGGATAC AGGCAGCGGACTCCAACCGGTGAAACACCCGGATACAGGTGTGCTGATGA CCGGCGCTGCCGACATTAGCGCGTCCTGGAAAACCCACTACGAGCGACTT GCTTCCGACGTTACAGGGAATAGCAGGTCCCCCGACCAATGGGTGAAATG GACCGCCGCGCCTCAGCGCCCCCACCTAGCATCGTTGGATGAACCAATAA CGATGCCCGAATTGAATGAAGCCCTCCTCCGACTTAAGAGACACAAGGCT TCCGGCCGGGACGGATTACCAGCAGATTTTCTGAAACTCGCGGCAGGTGA CGTGGGAACCGAGTCACCCATGGCCAAGGCCCTCCTAGGGATACTCAACC TAATGTGGAAATACCAGATTATCCCCGAGGAGTGGCAGGACTCCACGGTG GTCTCGATCCCCAAGAAAGGAGATGTCGCCGACATGAACAACTACCGAGG GATCTCGCTCATGAGCACCGTCCTTAAGGTACTTGTGATGATTATCAGCA CGCGCCTCAACGAGACCTTTGAAGAACACAACCTGTTCTCGCACGCACAA GCAGGATTTAGGAAGAAAGAGGAATGTGTGACCCAGGCCGCATGCCTCCT CGAGATCGCGCAACGACGCAAGCTCCAACGCAAGGCGACATTTCTCATGT TCGTCGATCTCAAGAAGGCCTACGACACGGTGCCGCACGAAGCGTTATTC GCCAAACTCGATTTTTACGGTGTGCGCGGGAACATGTTGGGTTTTATCCG CAAGCTGTATGCGAACAGCCGTATCTCTGTCCGGACCGGAGACCTTTTCT CGGAGACTTTTGGCCTGAAACGCGGGGTGAGACAAGGGTGCCCCCTATCA CCGGTCCTGTTCAATATATTCATTAATGATATCCTGGACGGAACCGAGAC ACTTGGAGTACCGGTATCGGGAAACAATGTAGAACGCAAAACTCGTGTCT CCGGACTTTTGTTCGCCGATGACCTTGTTGCTATCGCCTCAACCCGGAAC CGACTAGCTCAACTCGGGGATCGGCTGACCAAATGGTTGCAGGAGAACGA GATGTCAGCCGGGATTCACAAATGCGGGGTCATGGCCATTGGCGTGAGCA CGCGGCGACTCTCCTCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1342:11724..13792+

>mRNA_P-littoralis_Contig1342.1.1 ID=mRNA_P-littoralis_Contig1342.1.1|Name=mRNA_P-littoralis_Contig1342.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1959bp|location=Sequence derived from alignment at P-littoralis_Contig1342:11724..13792+ (Pylaiella littoralis U1_48)
GGGAGGGCGGGGAAGGAACCGCTGCGGACTATTCGATCGCAACTACGACG
ACTACGGGAGCAATTCCCGCAGGACTCCATTGTGCTCATGGGGGATTTTA
ACCGGGTCCGTACCGAGGTGGACCGGTGGCTACGCCGAACACCTTACCCG
ATCAAGGTAATGGAGCTCAGGGAGAAGGACGCCGAACTGGGAACGCGCGA
GCATGGATCCAAGCGGACGATTGACCACATGGTGTCCATGATGGCGCACC
CCGAGGATCACCTCAGGCGTCCTCGGGTGATCAGGAAGGTGGACATATCC
GACCACTACCCGCTGGTCAGCACGTTTAGGAGCGACCGGGCCGATGCGGC
CACTCCGGCCGGCTTCCCAGTTGCCGACGGCATAGGTGTCCATGTCACAC
GCGAGGAGGGCCAGCCCATCAGGATAGAATGCGCAGCATTACCGATGCCA
GGATCGTACTGGTACAGGAAAGGAGGGATCCGGGGGCAGAGGAATCATCA
ACGCATGGTACACTCTACGTACTGGACTCCCCTCCTAGACCTCCTCGAGG
AAGGCGAGGGGGATCTTGATGAGCTGGACCGACAAGCTGTGGCAGATGCC
GCGGCAACACGCATGGTGGACACGGCCTTCCAGGTCGCCAAAGCCCACCG
CGTTACGAAACTAAGGGAACCCAAGCGGAAGCCGGCTCTCAAAGCCTCAA
TCGCGCGGGCCATCGACGATCGAGGGAAGATGTACAGGCGCGCCAGAAAG
ACCAGGGGAGATGACGCCAATAGGACCGCAGCATGGGCAGCATACGAGGA
GACTAAGAAGACCGCCGAACGACTGGTTCGACAGGACCGCCGCAAAACAT
GGACGAAAGCGCTCCAAACAGCGAGCGCGCAGATGCGTACTGATCCGAAA
GCGTTCTGGAAATTCTCCTCGGATGTCGCTGGGTGGAAACGCAAGGATAC
AGGCAGCGGACTCCAACCGGTGAAACACCCGGATACAGGTGTGCTGATGA
CCGGCGCTGCCGACATTAGCGCGTCCTGGAAAACCCACTACGAGCGACTT
GCTTCCGACGTTACAGGGAATAGCAGGTCCCCCGACCAATGGGTGAAATG
GACCGCCGCGCCTCAGCGCCCCCACCTAGCATCGTTGGATGAACCAATAA
CGATGCCCGAATTGAATGAAGCCCTCCTCCGACTTAAGAGACACAAGGCT
TCCGGCCGGGACGGATTACCAGCAGATTTTCTGAAACTCGCGGCAGGTGA
CGTGGGAACCGAGTCACCCATGGCCAAGGCCCTCCTAGGGATACTCAACC
TAATGTGGAAATACCAGATTATCCCCGAGGAGTGGCAGGACTCCACGGTG
GTCTCGATCCCCAAGAAAGGAGATGTCGCCGACATGAACAACTACCGAGG
GATCTCGCTCATGAGCACCGTCCTTAAGGTACTTGTGATGATTATCAGCA
CGCGCCTCAACGAGACCTTTGAAGAACACAACCTGTTCTCGCACGCACAA
GCAGGATTTAGGAAGAAAGAGGAATGTGTGACCCAGGCCGCATGCCTCCT
CGAGATCGCGCAACGACGCAAGCTCCAACGCAAGGCGACATTTCTCATGT
TCGTCGATCTCAAGAAGGCCTACGACACGGTGCCGCACGAAGCGTTATTC
GCCAAACTCGATTTTTACGGTGTACAAGGGTGCCCCCTATCACCGGTCCT
GTTCAATATATTCATTAATGATATCCTGGACGGAACCGAGACACTTGGAG
TACCGGTATCGGGAAACAATGTAGAACGCAAAACTCGTGTCTCCGGACTT
TTGTTCGCCGATGACCTTGTTGCTATCGCCTCAACCCGGAACCGACTAGC
TCAACTCGGGGATCGGCTGACCAAATGGTTGCAGGAGAACGAGATGTCAG
CCGGGATTCACAAATGCGGGGTCATGGCCATTGGCGTGAGCACGCGGCGA
CTCTCCTCG
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