mRNA_P-littoralis_Contig134.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.32.1
Unique NamemRNA_P-littoralis_Contig134.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig134.32.1 vs. uniprot
Match: A0A6H5LJ65_9PHAE (DUF202 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ65_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.920e-57
Identity = 203/433 (46.88%), Postives = 235/433 (54.27%), Query Frame = 1 
Query:  433 MARRSVTIVASDGKRERVSWYTGATEAAVLRCALLALGLPASGGSGKGSGCGTDGAAAHLLWPSGDAVDFGTPIPEGVTLHLDTTELPSLQNYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSEVVTAPRRGLSITAPLVGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSGMFRRFIDRTTSAATAGSDEELERRPLLGIGRVSSATSLLSLSXXXXXXXXXXXXXXXXRGAGADNEVDGDGHNP--DHQRTAILKLKRINAYLANERTLLAWVRCVGKMFTVGVLCLTFA-DESGGGYALYFLGIGVVYFSMGPYVVYIGSLRYNQAEEVMRGSPHEAYEYFSGTHLRSLTILNAMLAALTVALMVNQLLATLG 1722
            MARRSVTIVASDG+RE +SWY GATEAAVLRCALLALGLP               +AAHLL  SGD VD GTPI +G TLHLDT    +L + +                 XXXXXXXXXXXXXXXXXXXXXXXXX                    +   R G S++  + G                                                        G  R+    +T      SDEELERRPLL  GRV S+TSL    XXXXXXXXXXXXXXXX                  + QR AILKLKRINA+LANERTLLAWVR VGKMFT GVLCL+ A D     Y + F+G G+VYF+MGPYVV++G+ R++QA +VM GS ++ Y +FSG+HLR LT L   LA +TVALM  QL A L 
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLK-------------SAAHLLRQSGDIVDLGTPITDGATLHLDTVRELALPSQEAAGDVYASGGHDHGESSXXXXXXXXXXXXXXXXXXXXXXXXX--------------------LATTRCGGSVSVTVSG------------------------------------------------------GGGDCRQ--RPSTFLERGDSDEELERRPLLRTGRVPSSTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQRLAILKLKRINAHLANERTLLAWVRAVGKMFTAGVLCLSLAGDGYSPTYTVCFVGTGIVYFAMGPYVVFVGAKRFHQAAQVMNGSVYDTYSFFSGSHLRGLTYLMMTLAVVTVALMATQLSADLS 344
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BLAST of mRNA_P-littoralis_Contig134.32.1 vs. uniprot
Match: D8LKT6_ECTSI (DUF202 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT6_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 7.200e-47
Identity = 107/210 (50.95%), Postives = 132/210 (62.86%), Query Frame = 1 
Query: 1120 MFRRFIDRTTSAATAGSDEELERRPLLGIGRVSSATSLLSLSXXXXXXXXXXXXXXXXRGAGADNEVDGDGHN---------PDHQRTAILKLKRINAYLANERTLLAWVRCVGKMFTVGVLCLTFADES-GGGYALYFLGIGVVYFSMGPYVVYIGSLRYNQAEEVMRGSPHEAYEYFSGTHLRSLTILNAMLAALTVALMVNQLLATL 1719
            M  RF++R        S+EELERRPLL  GRV S+TSLLS +                   G   E DG             P+ QR AILKLKRINA+LANERTLLAWVR VGKMFT GVLCL+ AD+     Y + F+G+G+VYF+MGPYVV++G+ R++QA +VM+GS H+ Y +FSG+H R LT L   LA +TVALM  QL A L
Sbjct:    1 MLSRFLER------GDSEEELERRPLLRTGRVPSSTSLLSTASSSSSVSSLFPR-------GTPRENDGXXXXXXXXXXXXXPEQQRLAILKLKRINAHLANERTLLAWVRAVGKMFTAGVLCLSLADDGYSPTYRVCFVGMGMVYFAMGPYVVFVGAKRFHQAAQVMKGSVHDTYSFFSGSHQRGLTYLMMTLAVVTVALMATQLSADL 197
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BLAST of mRNA_P-littoralis_Contig134.32.1 vs. uniprot
Match: D8LKT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT5_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.460e-24
Identity = 61/92 (66.30%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  433 MARRSVTIVASDGKRERVSWYTGATEAAVLRCALLALGLPASGGSGKGSGCGTDGAAAHLLWPSGDAVDFGTPIPEGVTLHLDTTE---LPS 699
            MARRSVTIVASDG+RE +SWY GATEAAVLRCALLALGLP               +AAHLLW SGD VD GTPI +G TLHLDT     LPS
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLK-------------SAAHLLWQSGDIVDLGTPITDGATLHLDTVRELALPS 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LJ65_9PHAE1.920e-5746.88DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKT6_ECTSI7.200e-4750.95DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKT5_ECTSI1.460e-2466.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:235854..239854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2853
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionDomain of unknown function DUF202
Ec32 orthologEc-11_005470.1
Cds size1311
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789616.0750709-UTR-P-littoralis_Contig134:235853..2369631680789616.0750709-UTR-P-littoralis_Contig134:235853..236963Pylaiella littoralis U1_48UTRP-littoralis_Contig134 235854..236963 -
1680789616.118932-UTR-P-littoralis_Contig134:239422..2398541680789616.118932-UTR-P-littoralis_Contig134:239422..239854Pylaiella littoralis U1_48UTRP-littoralis_Contig134 239423..239854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789616.084608-CDS-P-littoralis_Contig134:236963..2371381680789616.084608-CDS-P-littoralis_Contig134:236963..237138Pylaiella littoralis U1_48CDSP-littoralis_Contig134 236964..237138 -
1680789616.096389-CDS-P-littoralis_Contig134:237951..2390281680789616.096389-CDS-P-littoralis_Contig134:237951..239028Pylaiella littoralis U1_48CDSP-littoralis_Contig134 237952..239028 -
1680789616.107871-CDS-P-littoralis_Contig134:239363..2394221680789616.107871-CDS-P-littoralis_Contig134:239363..239422Pylaiella littoralis U1_48CDSP-littoralis_Contig134 239364..239422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.32.1prot_P-littoralis_Contig134.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 236964..239422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.32.1

>prot_P-littoralis_Contig134.32.1 ID=prot_P-littoralis_Contig134.32.1|Name=mRNA_P-littoralis_Contig134.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=437bp
MARRSVTIVASDGKRERVSWYTGATEAAVLRCALLALGLPASGGSGKGSG
CGTDGAAAHLLWPSGDAVDFGTPIPEGVTLHLDTTELPSLQNYDDDDDGG
GGGGLYSVLPDDNDSVDRGGFSGGVGGNVVAHRRASSSGANTAAAATAAG
GRDSEVVTAPRRGLSITAPLVGDHHSQRRRQQRLRRPSGPVESSPSSSSS
SLAKRRALLKIRRFFGVQSGGGGGGLNSGMFRRFIDRTTSAATAGSDEEL
ERRPLLGIGRVSSATSLLSLSSSSAGGGGGGGARRRERGAGADNEVDGDG
HNPDHQRTAILKLKRINAYLANERTLLAWVRCVGKMFTVGVLCLTFADES
GGGYALYFLGIGVVYFSMGPYVVYIGSLRYNQAEEVMRGSPHEAYEYFSG
THLRSLTILNAMLAALTVALMVNQLLATLGHNTKLE*
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mRNA from alignment at P-littoralis_Contig134:235854..239854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.32.1 ID=mRNA_P-littoralis_Contig134.32.1|Name=mRNA_P-littoralis_Contig134.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4001bp|location=Sequence derived from alignment at P-littoralis_Contig134:235854..239854- (Pylaiella littoralis U1_48)
ACGGCATTCTACGGAGCCCCCGCGGCAAACCGGGAAGATTTCATGGTTAT
TTATTCTTATCATCTACCACTGAGATTTCACGTGGAAGATTTCTTACTGC
TGTACCACTGCTGTGCACGTGTTTTATCGTGCTCACCGTCGCACACAGCC
AGACCGTACACACCCTTTGGCCAGGCAAATCCACAAACGTATGGACGGGT
GAGCCACAACGCAAGGAAAGAGCGCGGTAGTGACAGCAGCGTCAACAACT
TCCTCCCGTGTTGCGGACAGTTTTTCCCCCTTTCCCCTCTTTTTTAGGGC
GGCCAAACCAACAGATCATCCGATAATCGATCACATCACGCTCCAGCTGC
TGGGCTGCACGGGTACTGCTTTGGTGTCGCGACGCAGCAGCAAACAGCAA
AGATACGACAAGCGGTGAGACGAAACGGCGGTATGGCTAGGCGAAGCGTC
ACGATCGTCGCCTCCGACGGCAAGAGAGAGCGGGTATCCTGGTGAGCCAA
TCAGAAGTAGCACGACGTTGGCACTACCGAGTACCTGCTGTAGTCAGGAG
TTTGTACAGCAGCATTGGTTGTAGAGGTTAGAGGGCACGAAGAGTCATTC
CACCGAAAAAAGCAGTGAGCGCTCATAATGGCTGCGTGGCCTGTTGCCTG
CTCGATGCGTCTACCCTTTGCTCTGCGATAATGCGTCGAATTGACAAGAG
TTTGTCTTCAGAACTTGTCCAGAAGGCACGCTGCCGCATGCTGCCACGGT
CGACTGCCGGTTGCCGGTACCCCAACTGACACTCCACCCCTTCCACCACC
GCCGGCGTTGTCCAAACCTAACCTAGGTACACTGGTGCCACGGAAGCGGC
AGTTTTACGGTGCGCGCTCCTCGCCCTGGGACTCCCGGCGAGCGGCGGCA
GCGGCAAAGGCAGCGGCTGCGGCACTGATGGTGCCGCGGCCCACCTGCTC
TGGCCATCTGGGGACGCTGTAGATTTCGGTACGCCCATTCCGGAGGGCGT
CACTCTCCACCTCGACACGACTGAATTGCCGTCGTTACAAAACTACGACG
ACGACGACGACGGTGGCGGCGGTGGCGGCCTATATAGCGTTTTGCCTGAT
GATAATGACAGTGTCGACAGAGGTGGGTTTAGCGGCGGCGTCGGCGGTAA
CGTTGTGGCACATAGGCGTGCAAGCAGTAGTGGCGCAAATACGGCGGCGG
CGGCGACGGCGGCGGGGGGCAGGGATAGTGAGGTGGTGACCGCACCGCGG
CGTGGATTATCGATCACGGCACCTCTCGTTGGTGACCACCACAGCCAGCG
CCGGCGGCAGCAGCGATTACGACGACCATCTGGGCCGGTAGAGTCGTCCC
CGTCGTCATCGTCGTCATCGTTAGCGAAAAGAAGGGCGTTGCTGAAGATC
CGGCGATTTTTCGGCGTCCAGAGTGGCGGCGGCGGCGGCGGCCTCAACAG
CGGCATGTTCAGGAGGTTCATCGATCGAACGACATCCGCCGCCACCGCCG
GCTCAGACGAAGAGCTGGAGCGGCGGCCGCTGCTCGGCATCGGCCGAGTT
TCCTCGGCAACATCGCTGCTGTCGCTTTCGTCATCGTCAGCAGGCGGCGG
GGGCGGGGGCGGGGCGAGGAGGAGAGAGCGTGGAGCGGGAGCAGACAACG
AGGTGGACGGGGACGGACACAACCCCGACCACCAGCGCACCGCCATCCTT
AAGCTCAAGAGGATCAACGCCTACCTCGCCAACGAGCGGACACTGCTGGC
GTGGGTGCGGTGCGTGGGCAAGATGTTTACGGTCGGGGTGCTGTGTCTGA
CCTTCGCCGACGAGAGCGGCGGCGGTTACGCGCTGTATTTTCTGGGCATC
GGCGTGGTCTACTTTTCCATGGGGCCGTATGTCGTTTACATCGGGAGCCT
CAGGTAGGCACATGTGTAAATGCATCTACTTTAAAGTATATGGTTTCATA
CATACGGAGTACTCCGTATATGGTAAGCAATGGTGTACGTACGTGGTGAG
AAGTAACATGCCTTTTTTTGGACGAAAGTGTGATACATAACTCAGTACAG
AGGTACTCCCGAAGTGCTGTTTTTTCAACATTGCGTGCTTGAAAGTATGG
TATAACAAATACTTCGAAGCACGTACCTGGTATCATGTACACTGCTGTAA
CCCAAAAAATATATTTTGTTTCTTGGAACAAAGTCAAGGGCAACATATGC
TCCCTGAAATCGAGGTACGATAATTATTTTCTTTGAAACATGCCATCTTC
TTCATGGTAAGTGCGCCCATTTGTAAATTACTTTCACCTGGGCTTTCGTA
ACGTTGGATCAAATGTGTTACATCAAATATTCAAAAATGACGAGAAAAAG
TGGCGAAAGGTTTGACTTGGACGAAATTGGTCTCTTATCTGGCGTGCGGC
CGGGCGAGGCCTGGTCCGTGTTCCGCACTGCGAACCCAGCACATTAAGAA
AGACAAAGATGCTCAACTTCCTAACCACAACATATTCACACAAGAATAAA
CCGCATATTGGGATGTATATACCTCTATCAATACATAGCCTAGATCACAG
AAGACCTCGAGATCGAAAAATTGGTGTGATGAAAAGGCAACGCCAAGGCG
CACACGTATGCAATGCATGTACAGGAGTCTTGATTTTTCCCACGTCGAAT
ATTCAGAGCAACCCCCCCCCCCACACACTTTTGTTTCTTGTCTTCCGTTT
CGTTTTCCGTAAAAAGGTATAACCAGGCAGAGGAAGTGATGCGAGGCAGC
CCTCACGAGGCCTACGAGTACTTCTCGGGGACCCACTTGAGGAGCCTCAC
AATCCTGAACGCGATGCTCGCTGCGCTCACGGTGGCGCTCATGGTTAACC
AGCTCCTGGCAACCCTTGGACATAATACAAAGTTGGAATAAATTTAGCTC
TTTCTCTAAAAAAGAAGTCTGGAATTTCTTGTTTTTGTTGGGGCGCGATT
TACTCCGTGCGTGTGCAATTCAGTGAATCGGTGTTTGCTTCCTGCAGGGA
AGTGAATCTCGCGTAATGATGCAATCTGCTGCAGCAGCCTGCCTCTGCGT
GTCGTGTTTGCTGGTGCGCGGGCAGGTTTCGGCGCCTAGGTTATCGGGCT
GTACTTATTAGGACTGTCTGCGCGCGTCGTGACCCCGTCGTTGTGGGGGG
CGCAGGAGTGTGTCGTTGCGTTTATCTGTGTTGATCATCGCCCCCGGCAT
TCATGACGATTAAACCTTTCGCTCGTCGTGGTGGACACTGCTGTCTGACG
GCAGGATTGTGGGTATTTCGCACAGCAGTCGCGTAACGTGCGTCCCCCAA
TAAGTGCGACTGTTTTGAGATTCCTGGCGACTTTGTGCTCATGAGAAACC
GTTTCGAAACACGCACCGGCCCACGCAGGTGGGGGCCCTGTGCGTTTGGA
CCAAATGAAAAAAGCGTATTGTGTTTGACAAGACTCCTCGGCTGTACGTG
CGATGTTTCCCGCCGCCCTCAGAACCCCGAAAGCTGCTGCTGTACATCTC
GGGGCGCGGCGGAGGGTTTTAGAGAGGGCAGTAGACTTCCATATGGTCAC
TGTATCATAACCATGTGCCAGGTATCAACATTTCAGGAACGCAAGCGAGA
ATACGACTTCTTCTTGTCCCCCGTGTGTGGGTGCGGGTGTCGTTTACCTC
CTGCCGTACGCACGTGTACCGCACGCCAACTGGTCATTTTTTGTTCGGCA
ATCCGGCAGTCTTTTTTATTTCGTCGTTGTGCATATATTTTGCCACACGT
TTTGCCCGGGTGATTGTGATTTGCACGAGGGGTGCGTGTGTGCTCATACT
GCTGGTTGTCGTTGCGACTAACTTCTGTTGTAGCTGTAGCGTCCTGTCAT
AGGGAGCGACCGACCCCCGCTCTGTTGTACACTAAAATAAAAGGGAGAGC
AGTTTTGTCTGCTTCGTTCAGGAGTACAATCCGACGGCGTGTTTGTAGAA
TTACAGTTGGGTTCACACGTCTGTTGTTCAGGAGTGAGAACGAGAACCAC
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig134:235854..239854-

>mRNA_P-littoralis_Contig134.32.1 ID=mRNA_P-littoralis_Contig134.32.1|Name=mRNA_P-littoralis_Contig134.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1311bp|location=Sequence derived from alignment at P-littoralis_Contig134:235854..239854- (Pylaiella littoralis U1_48)
ATGGCTAGGCGAAGCGTCACGATCGTCGCCTCCGACGGCAAGAGAGAGCG
GGTATCCTGGTACACTGGTGCCACGGAAGCGGCAGTTTTACGGTGCGCGC
TCCTCGCCCTGGGACTCCCGGCGAGCGGCGGCAGCGGCAAAGGCAGCGGC
TGCGGCACTGATGGTGCCGCGGCCCACCTGCTCTGGCCATCTGGGGACGC
TGTAGATTTCGGTACGCCCATTCCGGAGGGCGTCACTCTCCACCTCGACA
CGACTGAATTGCCGTCGTTACAAAACTACGACGACGACGACGACGGTGGC
GGCGGTGGCGGCCTATATAGCGTTTTGCCTGATGATAATGACAGTGTCGA
CAGAGGTGGGTTTAGCGGCGGCGTCGGCGGTAACGTTGTGGCACATAGGC
GTGCAAGCAGTAGTGGCGCAAATACGGCGGCGGCGGCGACGGCGGCGGGG
GGCAGGGATAGTGAGGTGGTGACCGCACCGCGGCGTGGATTATCGATCAC
GGCACCTCTCGTTGGTGACCACCACAGCCAGCGCCGGCGGCAGCAGCGAT
TACGACGACCATCTGGGCCGGTAGAGTCGTCCCCGTCGTCATCGTCGTCA
TCGTTAGCGAAAAGAAGGGCGTTGCTGAAGATCCGGCGATTTTTCGGCGT
CCAGAGTGGCGGCGGCGGCGGCGGCCTCAACAGCGGCATGTTCAGGAGGT
TCATCGATCGAACGACATCCGCCGCCACCGCCGGCTCAGACGAAGAGCTG
GAGCGGCGGCCGCTGCTCGGCATCGGCCGAGTTTCCTCGGCAACATCGCT
GCTGTCGCTTTCGTCATCGTCAGCAGGCGGCGGGGGCGGGGGCGGGGCGA
GGAGGAGAGAGCGTGGAGCGGGAGCAGACAACGAGGTGGACGGGGACGGA
CACAACCCCGACCACCAGCGCACCGCCATCCTTAAGCTCAAGAGGATCAA
CGCCTACCTCGCCAACGAGCGGACACTGCTGGCGTGGGTGCGGTGCGTGG
GCAAGATGTTTACGGTCGGGGTGCTGTGTCTGACCTTCGCCGACGAGAGC
GGCGGCGGTTACGCGCTGTATTTTCTGGGCATCGGCGTGGTCTACTTTTC
CATGGGGCCGTATGTCGTTTACATCGGGAGCCTCAGGTATAACCAGGCAG
AGGAAGTGATGCGAGGCAGCCCTCACGAGGCCTACGAGTACTTCTCGGGG
ACCCACTTGAGGAGCCTCACAATCCTGAACGCGATGCTCGCTGCGCTCAC
GGTGGCGCTCATGGTTAACCAGCTCCTGGCAACCCTTGGACATAATACAA
AGTTGGAATAA
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