mRNA_P-littoralis_Contig1338.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1338.2.1
Unique NamemRNA_P-littoralis_Contig1338.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1338.2.1 vs. uniprot
Match: A0A6H5KXH5_9PHAE (CMD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXH5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.090e-39
Identity = 81/128 (63.28%), Postives = 91/128 (71.09%), Query Frame = 2 
Query:  221 ITPIIKGVEGCGGADELPLRLPDDLSWAGPDGTTIATAFAFLAAEAELIADAYVPTAVKTYMESWVSKWDGGVSPRGPLGAWLDPAV--AASGFGEEGQEGEEAMLRLMLVTAVASHSCDDTLLSECQ 598
            + PIIKG  GC  ADE P+ LP+ LSWA     TIA AFAFLAAEAEL+A A+VP AVK++ ESWVS WDGG +  G L  WL P V   ASG GE G +G+  MLRLMLVT VASH  DDTLLSECQ
Sbjct:  268 VHPIIKGFRGC--ADETPMALPEQLSWATGGDETIAAAFAFLAAEAELLAHAFVPPAVKSFTESWVSSWDGGAAQIGELEEWLGPTVRVTASGLGE-GDKGDVVMLRLMLVTIVASHRTDDTLLSECQ 392
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1338.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXH5_9PHAE3.090e-3963.28CMD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1338contigP-littoralis_Contig1338:3171..6607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size600
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionAhpD-like
Ec32 orthologEc-01_002340.1
Cds size213
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1338.2.1prot_P-littoralis_Contig1338.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1338 3179..5304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.4734888-UTR-P-littoralis_Contig1338:3170..31781680789614.4734888-UTR-P-littoralis_Contig1338:3170..3178Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 3171..3178 +
1680789614.6791806-UTR-P-littoralis_Contig1338:5304..55611680789614.6791806-UTR-P-littoralis_Contig1338:5304..5561Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 5305..5561 +
1680789614.6892765-UTR-P-littoralis_Contig1338:6485..66071680789614.6892765-UTR-P-littoralis_Contig1338:6485..6607Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 6486..6607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.4848952-CDS-P-littoralis_Contig1338:3178..32131680789614.4848952-CDS-P-littoralis_Contig1338:3178..3213Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 3179..3213 +
1680789614.4937582-CDS-P-littoralis_Contig1338:3727..39021680789614.4937582-CDS-P-littoralis_Contig1338:3727..3902Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 3728..3902 +
1680789614.642829-CDS-P-littoralis_Contig1338:5301..53041680789614.642829-CDS-P-littoralis_Contig1338:5301..5304Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 5302..5304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1338.2.1

>prot_P-littoralis_Contig1338.2.1 ID=prot_P-littoralis_Contig1338.2.1|Name=mRNA_P-littoralis_Contig1338.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MLFGILNRVVDTFVSKTESGPMFPLPVRMMMKVQPMTSLVQRLTSWMMSW
MMNGEDGKVEAGKVFKDINE*
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mRNA from alignment at P-littoralis_Contig1338:3171..6607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1338.2.1 ID=mRNA_P-littoralis_Contig1338.2.1|Name=mRNA_P-littoralis_Contig1338.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3437bp|location=Sequence derived from alignment at P-littoralis_Contig1338:3171..6607+ (Pylaiella littoralis U1_48)
GGACGGCCATGCTATTCGGGATCCTCAACCGCGTCGTTGACACGTGAGTC
TTTGTGAAATTATTTTTTATGTACATATAATACAGATATGTATACGAATT
ATATACTTGCATCAGTAGTGCCGTCGTCGCACCCAGCTGCAAAATAAACA
AATTCGAGTGGCTTTATCTTTTCTTTTCTTTCTTGAATTTTACAACATTA
GTCGGGTCAACTGCTGCCGTCACTAATCTGAACTACAACTAGTCTCTCAC
AAGATTCACATCACAAACGTAAGGATTTTGCCCCACTACGAAAGCTACGT
GAACGAATTATGATACAAAGCATCAGCACATCACGCAGTATATCAATCCC
CCCCTAACCCTCACAAATGGGAAAAAAAGCATCGGCTGAAAGGGATGTGT
GTGTGTGTGTGTTTGTGTCCGGTGAATCGTGAAACGGCGTTGGGGCGGAA
ATCAACGTCTCTCCTCCTTCCTCCACCACCACGATTCCAATCTCGCTGCT
CCTGCTGCTCCTGCTCTACGCCCACGCGTACGCGTACGTTCGTCCGTCCG
TCCGTAGGTTCGTCTCAAAGACAGAGTCCGGACCGATGTTCCCGCTGCCT
GTGCGCATGATGATGAAGGTCCAGCCTATGACGTCGCTGGTGCAGCGCTT
GACGAGTTGGATGATGTCCTGGATGATGAACGGGGAGGACGGCAAGGTCG
AGGCCGGGAAAGTTTTCAAAGACATCAACGAGGTACTAACTTATGACCGA
TATAAATAAACCCCGACAACGCCGCTTTGGGTTCGAGTTGGTTTTCAGCT
CTTTGTTTTGTTTTTTGGTATGACTACCCCCGCCCTCCCCCCCCCCCCCT
CGTCCTTACTTTCTCATTCTATAACAATGAAGTTGCCCCCCCCCGGGCCG
AATGTTGTGAGAGCTCGACATCTCGACAACACGAAAGAGAGAGTGTCAGC
GCCAGAAATAAGAACAGGCGTGTCGGCGCTGGAAAGATCGCGACGAGAGA
GCTGTAACGTACTCGAAAACGTGTATTTTGGTCTATACTTCGAAGTATGA
TTATTGGTGCATGTATGTAGTCAGGCTTTTTCTAACATCGGTGACCGGGG
ATGTGTGGGGGGTAAACTCTGTGATGATTGTCCTTCCACGGTATACGGTA
CTACTACTGTAGCGCCCCCCGAAACAATGGTCGGCGATATTACACGAATC
GTGAACCTCGGTGGAACTTCACTTGGATCGGATATCGAATTCCGTTGTGA
AGGTCGGGGCGGGACGGGATAATAATGTAACAGAAAATTATTGGAATTGG
CTTCGGGTTTGTTGAGTGGTTGGTCAATGTCCTTTTGCGTGTCGTTGTAG
CCGCTTGGACATGACGTGTGTGTGCGAAGCCACGAAGGGATAAATAAAAA
AAAGTGAAATCCGGCCAGAACAATCGAACATCCAGACTGCTTGTTTCTTT
TGGCCAATCAAAACGCTGCGTGCGTACCTTGGAGATCTTGCAGTCATCCC
TGCCCTTGAGTTCTGCCAAACTTTGTTCCAATGTATTATATTTCCTTCGA
ATCTTGTTCTGATTTCCAAATATTTTATTTTACTGACCGATCACAAAACA
AATTCCGTGCCGCTTAATATATTTTGAGTATGTGTCATATTTGGATTGAC
CGTCGCAGATCAGGAAGAGTCCGTGGAGGACCTTTTCCATCTAAATGCAA
TTCCACTTCATCAGCCAAAATCACTCATCACAAATGACGTCGCTCGTGTC
CAAGGGTATAAGGCCGGGGGACATTTTTTTCCCATACGAAAGTTTTCATT
TGGACCAATAAGAAAACTGTGTGCCACACATCGATCTCTATCTCTCTCTC
TCCATCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTATCTC
TCTCTCCCCCTATCTCTCTCCCGGCATGCTTGTGAGCCCAACCTAATAGG
AGGCGCGGCGTGGTGTTGGTCAATGAGGAGAATGCGTTGTGTCACGCCAA
TCCCGCCCCTTCAACCATTTTTTGACGCCGCTTATTCCCGTCCCCCGCCA
ATCCTTCACACCGAAACGAATTGCCTGTGTGTATGTTTCGGCGTGCTTGC
GCACCAATACAAAACAATAATTCATACGAAGTGATCACTCCGATTATCAA
GGGGGTCGAGGGCTGCGGAGGCGCCGACGAGCTGCCGCTGCGGCTGCCGG
ACGACCTCTCGTGGGCCGGCCCCGACGGCACCACGATCGCCACCGCCTTC
GCTTTCCTGGCGGCAGAGGCGGAGCTGATCGCCGACGCTTACGTCCCGAC
GGCGGTGAAGACGTACATGGAGTCGTGGGTTTCAAAGTGGGACGGGGGCG
TTTCTCCCAGGGGACCGCTGGGGGCGTGGCTGGACCCTGCGGTGAGTTAT
GATCGACTTTTCGGGTTTCCATATCGGTTCAGCCTCACGTCTTCCTGTGG
TCACTACTGCTGTTGTCTCGTTCTTGAAAGTAAATATCGTACGAAGGAGA
GGATGCTACTGCTTATGGTGTGAAGTGAAGGAGACCACTCGGACGTGCAC
ACAGGAAGTTTATGGAGTATTATCCGGGAGGCGAATTTGGTTCTCCTCTC
GGAATTTAATTGTTATCTACGAGTAGATGGCTTCTCGTTGCGTGTCGATG
GTCAGTGTATGACGTGGCGTGTGGAGCGTGTCGCCTAAGAGACAAATCTG
AGTTCCTTGGGTATTTGGGGCTCGAAAGCCCCGGCACGAATCGACCGTCC
TCGGCTAAGCAGTGGTCATCCTCAGGGCCGAAATGATGCGACATTACGTT
TATGTAGTGTTCAGCGTAAACGAGACACTCTTGGCATGATAAGTTAGCAG
CCGAAATATTGCCGCATTTTTTTGCCTCAAAACAGGCAAGTGTGTGTGGT
GCTTGGCGTGAACGCGACACTATTGGTCTTTATTAGCAGCCGAAATACTG
CGAATGTGTTCTGAGCTTGAAACTCCAGTCAGCCAGTGCGACAGGGCGAA
AACGAAGACATGTTTTGAACACGAAAACACAAAACGTACAGAGCAAGCAC
CCGGTTCGGATCAACTTATACTTTGTCCTGAATGAATCAGGCCCACCTTT
TGTGAGTATACATCGTGGTATTTTGGACGATTGGAGGAGACACTTTCGCC
CCCTCCCCTCTCGAGCGATCATGCGTGGGAGTAGCTTCAATCACTGTGAC
AGACACAAATGAATGGCACCCGTTTCTCCGATGGCTTGGAGCGTTGAGCA
TTAATGGAGCCCTCTCTTTTGATGGCGACTGCTTGTTTCGCGTGTGTGGT
GGACGATCAATCAAGGTGGCCGCGAGCGGCTTCGGCGAGGAGGGCCAAGA
GGGCGAGGAGGCGATGCTGAGGCTAATGCTTGTCACGGCCGTGGCCAGTC
ATTCTTGCGACGACACCTTGCTCAGCGAGTGCCAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1338:3171..6607+

>mRNA_P-littoralis_Contig1338.2.1 ID=mRNA_P-littoralis_Contig1338.2.1|Name=mRNA_P-littoralis_Contig1338.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1338:3171..6607+ (Pylaiella littoralis U1_48)
ATGCTATTCGGGATCCTCAACCGCGTCGTTGACACGTTCGTCTCAAAGAC
AGAGTCCGGACCGATGTTCCCGCTGCCTGTGCGCATGATGATGAAGGTCC
AGCCTATGACGTCGCTGGTGCAGCGCTTGACGAGTTGGATGATGTCCTGG
ATGATGAACGGGGAGGACGGCAAGGTCGAGGCCGGGAAAGTTTTCAAAGA
CATCAACGAGTGA
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