mRNA_P-littoralis_Contig1337.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1337.4.1
Unique NamemRNA_P-littoralis_Contig1337.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: D8LPK5_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK5_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 2.350e-43
Identity = 111/293 (37.88%), Postives = 176/293 (60.07%), Query Frame = 1
Query:   34 IIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNE--DSMIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMR---DDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRY-TEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
            I ++C F +Y L G  +IV++ GL++  S   +Q ++S++ L      LG T + RGP+     +   D ++IGT M I  L+ L+A + I+ +++R L++ E+  R   E++ + Q ++L RIGHD+ NN TL++ LCE    ++   +S L+ V ++N L  VL+SD++D        R + KE +D+ +L+  Y +V  GM  LEGK   ++  G+R    +   VY N ERLHQIMCN++ N+VKYTQ G I       +E T+ I VTD+GIG+SE D+ K+FD F+R
Sbjct:  198 ITSMCAFSNYHLLGFASIVVMYGLLVGVSACIDQFHASLVQLACMGSILGLTAAGRGPFVHAVKDRETDEVLIGTQMGIAALSALNAFVVILVSQLRDLQTFEKISRCQAEELAERQTLDLYRIGHDMKNNATLIQALCE--VGETDGDNSILETVKSVNILGNVLVSDMVDMVNGSKAHRVVPKEDVDIKELLNVYSMVGTGMLLLEGKDKDITM-GVRIADGEKLEVYINKERLHQIMCNILSNSVKYTQSGTIVLEAGCCSESTVEIRVTDSGIGMSEADVCKVFDLFFR 487          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: Q8QNA2_ESV1K (EsV-1-186 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA2_ESV1K)

HSP 1 Score: 171 bits (433), Expect = 4.470e-43
Identity = 112/305 (36.72%), Postives = 179/305 (58.69%), Query Frame = 1
Query:    1 NSSACTIGIPI-IIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNEDS--MIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPF---VYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEE-TLSIVVTDTGIGISEKDIPKLFDEFYR 891
            N+  C I + + I ++C F  Y LFG  +IV +  L++  S + +Q  +S++ L  T   LG+T + RGP+  +  + ++  ++IGT M I  L+ L+A + I+ +++R L+ SER  R    ++ + Q ++L RIGHD+ NN TL++ +CE    ++   +  L+ V ++N L  VL+SD++D        R + KE +D+ +L+  Y +V  G+  LE K   ++     DD       Y+N ERLHQIMCNLV NAVKYTQ G I      + E T+ I VTD+G+G+SE D+ K+FD F+R
Sbjct:  186 NTLVCGISVFLGITSMCPFSDYHLFGFASIVGMYALLVGVSAYIDQFQASLVQLACTGSILGFTAAGRGPFVHVMKDGEAEEVLIGTQMGIAALSALNAFVVILVSQLRDLQKSERISRCQAAELAERQTLDLYRIGHDMKNNATLIQAICE--VGETDGDNRILETVKSVNILGNVLVSDMVDMVNGKQVHRAVPKEDVDITELLNVYSMVGTGLLLLEEKDKDITVGVRIDDESENFGAYTNRERLHQIMCNLVSNAVKYTQCGKIVLSAGCSSESTVEIRVTDSGVGLSEADVCKVFDLFFR 488          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: D7G325_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G325_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.100e-36
Identity = 83/176 (47.16%), Postives = 108/176 (61.36%), Query Frame = 2
Query:  893 RCSAATRVNSGTGVGLANVKNICNMIGATITASSIGRGFGSTFTLSLKRDKFI------ETKNTFSFRVLVIDDSSVIRELLSHYLSSMGCDVVSNNSVEEARKKLAG-----FDVIFTDGSMEGQSGTDFIKDIRGGLVTDAPYDIPIVLCSGEKHEIEDERTLVVVKPFSRGDI 1387
            R   A++++SGTG+GL+NV+NIC+ IGA I  SS G G G TFTL L R +        +    FSFRVL +DDS VI  LLS Y +S GC+VV+  S EE+R  L       FDV+ TD  M  ++G D I  +R G V   P D+P +LCSG+ HE +D RT+ + KPFS  DI
Sbjct:  212 RSRRASQISSGTGLGLSNVRNICDAIGAKIGVSSPGEGKGCTFTLVLPRRRRSIFSGHGQISMQFSFRVLAMDDSIVILRLLSKYFTSFGCEVVNACSAEESRALLGQPNQEKFDVVITDSFMGDETGIDVIHSLRRGAVRGLPSDLPCILCSGDSHEFDDPRTVSITKPFSSADI 387          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: A0A6H5JSS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS5_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 3.830e-36
Identity = 103/325 (31.69%), Postives = 181/325 (55.69%), Query Frame = 1
Query:    7 SACTIGIPIIIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNED---SMIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHD---SKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYN-GMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEE---TLSIV--VTDTGIGISEKDIPKLFDEFYR*M*CSHTG*LRDRGGIG 942
            +A  +G+  ++ +  F  Y +F    I+   G I+  S   +Q  + ++  +   + LG T+  RGP+  +   E+   ++I+ T +     T  SA +SI  TR+RKL++ E+   E  EK+++ Q V LC++ HD+ NN T + G+ E++ D   P     S+LK++ A  T+NG L+ D+ D+F+ +   R I + ++DV ++ E ++  A+ +  + G+S+  + + G  +    V+++ +RLHQI+ NLVGNAVKYT+ G I   +   ++   T S++  V DTGIGI  +DIPK+F   +R   C+    L    G+G
Sbjct:  216 AAMVLGLAGVVLMFAFTDYGVFAFGAILGAYGSIVTVSTQLDQWNACLMGAVAAALMLGLTMGGRGPFNSVCYFEEGARNVILSTQLATTVATGCSAFVSISSTRLRKLQAREKASLERAEKMIETQTVQLCKVAHDMLNNTTFIWGVTESLADTLPPTGQSASQLKMIQAAITMNGTLVKDMTDSFKPEGHGRPIRRTEVDVQEMAELHVNFAKALVRMAGRSIETTLDLGTAEGEFKVFTDRDRLHQILSNLVGNAVKYTKSGTIVLRVSRQDDAGTTGSVILQVIDTGIGIDAEDIPKIFGTLFR---CARGAQLAPGSGLG 537          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: D7G737_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G737_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.060e-36
Identity = 103/324 (31.79%), Postives = 181/324 (55.86%), Query Frame = 1
Query:   10 ACTIGIPIIIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNED---SMIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHD---SKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPF-VYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEE---TLSIV--VTDTGIGISEKDIPKLFDEFYR*M*CSHTG*LRDRGGIG 942
            A  +G+  ++ +  F  Y +F    I+   G I+  S   +Q  + ++  +   + LG T+  RGP+  +   E+   ++I+ T +     T  SA +SI  TR+RKL++ E+   E  EKV++ Q V LC++GHD+ NN T + G+ E++ D   P     S+LK + A  T++G L+ D++D+F+ +   R + + ++DV ++ + ++  A+ +  + GKS+  + +    +  F V+++ +RLHQI+ NLVGNAVKYT+ G I   +   ++   T S++  V DTGIGI  +DIPK+F   +R   C+    L    G+G
Sbjct:  217 AMVLGLAGVVLMFAFTGYGVFAFGAILGAYGSIVTVSTQLDQWNACLMGAVAAALMLGLTVGGRGPFNSVCYFEEGARNVILSTQLATTVATGCSAFVSISSTRLRKLQTREKASLERAEKVIEAQTVQLCKVGHDMLNNSTFIWGVTESLADTLPPTGQSASQLKSIQAAITMSGTLVKDMIDSFKPEGHGRPVRRTEVDVQEMADLHVNFAKALVRMAGKSIETTLDKGTTEGEFNVFTDRDRLHQILGNLVGNAVKYTKSGTIVLRVSRQDDSGKTGSVILQVVDTGIGIDAEDIPKVFGTLFR---CARGAQLAPGSGLG 537          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: UPI001ADED329 (HAMP domain-containing histidine kinase n=1 Tax=Sediminibacillus sp. DP4-553-S TaxID=2729421 RepID=UPI001ADED329)

HSP 1 Score: 90.5 bits (223), Expect = 7.370e-16
Identity = 63/184 (34.24%), Postives = 93/184 (50.54%), Query Frame = 1
Query:  358 EKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSK-----LKIVNAINTLNGVLISDIMDTFR-DDPTRKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
            EK   ++      I H+L    T +KG  + I    +  D K     L I+         L+ D+MD  + ++    +  EKID+  ++E  + V +     E K + V YN    DIP   ++  R+ QI  NL+ NAV+YT+ G I   I Y   ++ I ++DTGIGIS+KDIP LFD FYR
Sbjct:  234 EKYQQNRHEFFSNISHELKTPITYIKGYTQAI-QKKLYRDEKEKKLFLNIIENETVRMNKLMDDLMDLSKIEEGKLNLQYEKIDLTHVLE--MAVNKIQIKAEEKRLTVHYN-QETDIPLFVADGYRMEQIFTNLLENAVRYTEEGSIKVTISYHHSSIRIRISDTGIGISDKDIPHLFDRFYR 413          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: A0A7C6DSY6_9BACT (HAMP domain-containing histidine kinase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6DSY6_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-15
Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  397 IGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIV----NAINTLNGVLISDIMDTFRDDPTR-KISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGC-ITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
            + H+L    T +KG  E I  + +  +  +K V    N  N LN  L++ I+D  R +  +    K+K+D+ D++E  I +      ++   +V++ +   ++   V+++ E++ QI+ NLV NA+KYT  G  IT GI+     + + V+DTGIGI +KD P +F++FYR
Sbjct:  187 VSHELRTPLTSIKGFAETILQEDLSKEEIMKFVQIIYNEANRLNN-LVNAILDISRIEAAKVHFKKKKVDLKDIVENVIELV--YPRIKSSDLVINRDYSDEEKYIVFTDEEKVEQIILNLVDNAIKYTPFGGEITIGIQNKGNEILVYVSDTGIGIPDKDKPHIFEKFYR 354          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: UPI0013E9425E (ATP-binding protein n=2 Tax=Clostridium TaxID=1485 RepID=UPI0013E9425E)

HSP 1 Score: 89.0 bits (219), Expect = 3.220e-15
Identity = 62/223 (27.80%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  289 TISIV--FTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENI--FDDSIPHDSKLKIVNAINTLNGVLISDIMDTFRDDPTRKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRG-CITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR*M*CSHTG*LRDRGGIG 942
            T+++V   T V+KLE    ++  N              + H+L    T +KG  E +   DD+   +  L I+N        LI+DI+     +  + I KEKI+V  +++    + + M+ ++G  + +       DI  +  + +R  Q++ NLVGNA+ Y++ G  +  G    E+   + V DTG+GI++K IP++F+ FYR          R  GG G
Sbjct:  330 TVAVVQDITEVKKLEKMRTQFVAN--------------VSHELKTPLTSIKGFAETLKYVDDAETKEKFLNIINEEAERLTRLITDILTLSHIEQQKGIKKEKINVNKIVKDVYNLMKNMADVKGIKLTIQ----EQDIKILKGDADRFKQMLINLVGNAINYSETGDSVCIGTENKEDGFILYVVDTGVGIAKKQIPRIFERFYR----VDKARSRSNGGTG 530          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: UPI001FE65F6E (cell wall metabolism sensor histidine kinase WalK n=1 Tax=Desertibacillus haloalkaliphilus TaxID=1328930 RepID=UPI001FE65F6E)

HSP 1 Score: 88.2 bits (217), Expect = 3.740e-15
Identity = 59/212 (27.83%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  268 ELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIVNAI--NTLN-GVLISDIMDTFR-DDPTRKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
            EL  L+ATI+ +  ++ K+E      R+  E +  D + N     H+     T ++G  E + DD I    + K  N +   T+N   L+ D+MD  +      K+ KE + V   +E  ++  +  + +E K +        + + F+Y++  RL+Q++ NL+ NA+K+T  G I+   +   E + ++++DTGIGISE D+P +++ F++
Sbjct:  194 ELGELAATINHMSEKLDKVEGE----RQRIENIRTDFLANF---SHEFRTPLTAMQGFIEALQDDLIAEKGRKKYYNVMYEETMNLNCLVDDLMDLIKLRSQETKLLKETVHVNHALEKVLL--KFQTAVEEKGLSFKVRSEEESL-FIYADPSRLNQVIDNLLANALKFTNEGSISITAKRNGENIELIISDTGIGISEADLPYIWERFFK 395          
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: A0A7V1D580_9GAMM (Histidine kinase n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A7V1D580_9GAMM)

HSP 1 Score: 84.3 bits (207), Expect = 3.950e-15
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  475 DSKLKIVNAINTLNGVLISDIMDTFRDDPTR-KISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
            DS  +I  A N L G LISD++D  + +  R     E++ + +++E  +   R ++  +G  + VS +   D  P + ++ +RL Q + N + NAVK+T++G +T  +    + + I VTDTGIGISEKD+P+LF+ F R
Sbjct:   17 DSMQRINRAGNHLLG-LISDVIDISKIEAGRIDAYPEQVSLKEVVEDAVESIRPLADAKGLKLEVSIDDPEDSWPEMTTDRKRLMQCLLNYLSNAVKFTEQGMVTLTVSVNGDRVEISVTDTGIGISEKDLPRLFEAFER 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPK5_ECTSI2.350e-4337.88Histidine kinase-like protein n=1 Tax=Ectocarpus s... [more]
Q8QNA2_ESV1K4.470e-4336.72EsV-1-186 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D7G325_ECTSI1.100e-3647.16Histidine kinase-like protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSS5_9PHAE3.830e-3631.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G737_ECTSI7.060e-3631.79Histidine kinase-like protein n=1 Tax=Ectocarpus s... [more]
UPI001ADED3297.370e-1634.24HAMP domain-containing histidine kinase n=1 Tax=Se... [more]
A0A7C6DSY6_9BACT1.180e-1532.16HAMP domain-containing histidine kinase n=1 Tax=ba... [more]
UPI0013E9425E3.220e-1527.80ATP-binding protein n=2 Tax=Clostridium TaxID=1485... [more]
UPI001FE65F6E3.740e-1527.83cell wall metabolism sensor histidine kinase WalK ... [more]
A0A7V1D580_9GAMM3.950e-1535.71Histidine kinase n=1 Tax=Ectothiorhodospiraceae ba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1337contigP-littoralis_Contig1337:17282..18668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPK5
PFAMsHATPase_c,Response_reg
Model size1387
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.31e-36
EggNOG OGsCOG0642@1|root,KOG0519@2759|Eukaryota
Descriptionphosphorelay sensor kinase activity
Cds size657
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.3247848-UTR-P-littoralis_Contig1337:17281..177741680789614.3247848-UTR-P-littoralis_Contig1337:17281..17774Pylaiella littoralis U1_48UTRP-littoralis_Contig1337 17282..17774 -
1680789614.3464425-UTR-P-littoralis_Contig1337:18431..186681680789614.3464425-UTR-P-littoralis_Contig1337:18431..18668Pylaiella littoralis U1_48UTRP-littoralis_Contig1337 18432..18668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.3351297-CDS-P-littoralis_Contig1337:17774..184311680789614.3351297-CDS-P-littoralis_Contig1337:17774..18431Pylaiella littoralis U1_48CDSP-littoralis_Contig1337 17775..18431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1337.4.1prot_P-littoralis_Contig1337.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1337 17775..18431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1337.4.1

>prot_P-littoralis_Contig1337.4.1 ID=prot_P-littoralis_Contig1337.4.1|Name=mRNA_P-littoralis_Contig1337.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
MIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVN
LCRIGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIVNAINTLNGVLISDI
MDTFRDDPTRKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRD
DIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEETLSIVVTDT
GIGISEKDIPKLFDEFYR*
back to top

mRNA from alignment at P-littoralis_Contig1337:17282..18668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1337.4.1 ID=mRNA_P-littoralis_Contig1337.4.1|Name=mRNA_P-littoralis_Contig1337.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1387bp|location=Sequence derived from alignment at P-littoralis_Contig1337:17282..18668- (Pylaiella littoralis U1_48)
AATTCTTCTGCCTGTACCATAGGAATACCCATAATCATTGCGTTATGTGT TTTCAAATCGTACTTCTTATTTGGGTTAACGACCATTGTTATTATAAATG GACTCATATTATTAACAAGTGTCTTCTCGAACCAGTTATATTCGAGTATA TTGTGTCTCTTATACACAATTGTTTGACTTGGATATACACTTTCTGATAG AGGACCATACGCATTTCTAGCTGTCAACGAAGACTCTATGATAATAGGGA CGGATATGACCATAATAGAACTCACATTACTGAGCGCAACCATTTCCATC GTTTTCACAAGGGTTAGAAAATTGGAATCATCTGAGAGGGAGTGGCGTGA GAACACCGAAAAAGTTATGGATGACCAAATGGTGAATTTGTGTAGAATCG GACATGATCTAAATAACAATTTTACCCTGGTAAAAGGGTTGTGTGAGAAT ATATTCGATGATTCTATACCCCATGATTCAAAATTAAAAATTGTGAATGC CATAAATACATTGAACGGTGTTTTGATTTCCGACATAATGGACACTTTCA GGGACGACCCGACTAGGAAAATTTCTAAAGAAAAAATAGATGTACTAGAT CTTATTGAAACATACATCATCGTTGCACGTGGAATGTCAGGATTAGAGGG GAAAAGCATGGTTGTTTCATATAATGGTATGAGAGATGATATACCATTCG TGTATTCTAATATTGAGCGTCTTCACCAGATAATGTGTAATCTGGTAGGG AACGCGGTAAAATATACACAACGAGGGTGTATAACATTCGGCATAAGATA CACTGAAGAAACTCTGTCTATCGTTGTCACAGATACTGGTATTGGTATTT CAGAAAAAGATATACCAAAATTATTCGATGAGTTTTACAGATAGATGTAG TGCAGCCACACGGGTTAACTCCGGGACAGGGGTGGGATTGGCCAATGTGA AAAATATATGTAATATGATAGGAGCAACTATTACGGCTTCAAGTATTGGA AGGGGGTTCGGAAGCACATTCACTCTCTCGTTGAAAAGAGATAAATTTAT AGAAACCAAAAATACATTCTCTTTTCGCGTATTGGTGATAGACGACTCGT CTGTGATAAGAGAACTTCTTTCTCATTATCTATCCTCCATGGGGTGTGAT GTTGTTTCTAACAATTCGGTCGAAGAAGCACGTAAAAAACTAGCCGGATT TGATGTGATATTTACAGATGGTTCGATGGAAGGACAATCGGGTACTGACT TCATAAAAGACATAAGAGGAGGTTTGGTGACAGATGCGCCATATGATATC CCGATAGTACTTTGCAGCGGTGAGAAACACGAGATCGAAGACGAGAGAAC ACTTGTCGTGGTAAAACCTTTCTCCAGGGGAGACATT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1337:17282..18668-

>mRNA_P-littoralis_Contig1337.4.1 ID=mRNA_P-littoralis_Contig1337.4.1|Name=mRNA_P-littoralis_Contig1337.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1337:17282..18668- (Pylaiella littoralis U1_48)
ATGATAATAGGGACGGATATGACCATAATAGAACTCACATTACTGAGCGC
AACCATTTCCATCGTTTTCACAAGGGTTAGAAAATTGGAATCATCTGAGA
GGGAGTGGCGTGAGAACACCGAAAAAGTTATGGATGACCAAATGGTGAAT
TTGTGTAGAATCGGACATGATCTAAATAACAATTTTACCCTGGTAAAAGG
GTTGTGTGAGAATATATTCGATGATTCTATACCCCATGATTCAAAATTAA
AAATTGTGAATGCCATAAATACATTGAACGGTGTTTTGATTTCCGACATA
ATGGACACTTTCAGGGACGACCCGACTAGGAAAATTTCTAAAGAAAAAAT
AGATGTACTAGATCTTATTGAAACATACATCATCGTTGCACGTGGAATGT
CAGGATTAGAGGGGAAAAGCATGGTTGTTTCATATAATGGTATGAGAGAT
GATATACCATTCGTGTATTCTAATATTGAGCGTCTTCACCAGATAATGTG
TAATCTGGTAGGGAACGCGGTAAAATATACACAACGAGGGTGTATAACAT
TCGGCATAAGATACACTGAAGAAACTCTGTCTATCGTTGTCACAGATACT
GGTATTGGTATTTCAGAAAAAGATATACCAAAATTATTCGATGAGTTTTA
CAGATAG
back to top