mRNA_P-littoralis_Contig1327.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1327.1.1
Unique NamemRNA_P-littoralis_Contig1327.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1327.1.1 vs. uniprot
Match: A0A1Q8QT87_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. DV TaxID=1844708 RepID=A0A1Q8QT87_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 1.900e-6
Identity = 19/36 (52.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   97 LPGDIRYEGDGFSVHFPWVLCIVLSVFGNILMRQLQ 204
            LPGD+R +G+GFSV+FPWV C+V+S   ++L+  L+
Sbjct:   44 LPGDVRVKGEGFSVYFPWVSCLVVSALASLLLWLLR 79
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BLAST of mRNA_P-littoralis_Contig1327.1.1 vs. uniprot
Match: A0A0B1U010_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. TomC TaxID=1562888 RepID=A0A0B1U010_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 1.520e-5
Identity = 18/36 (50.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   97 LPGDIRYEGDGFSVHFPWVLCIVLSVFGNILMRQLQ 204
            LPGD+R +G+GFSV+FPWV C+++SV  + ++  L+
Sbjct:   44 LPGDVRLKGEGFSVYFPWVSCLLVSVLVSFILWLLR 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Q8QT87_9DELT1.900e-652.78Uncharacterized protein n=1 Tax=Desulfovibrio sp. ... [more]
A0A0B1U010_9DELT1.520e-550.00Uncharacterized protein n=1 Tax=Desulfovibrio sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1327contigP-littoralis_Contig1327:768..1028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog596151.DesfrDRAFT_2260
PFAMsDUF2905
Model size261
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.81e-07
EggNOG OGs2AHW8@1|root,31893@2|Bacteria,1Q001@1224|Proteobacteria,436A3@68525|delta/epsilon subdivisions,2X0UV@28221|Deltaproteobacteria,2MDGS@213115|Desulfovibrionales
Ec32 ortholog descriptionProtein of unknown function DUF2905
Ec32 orthologEc-17_003660.1
DescriptionProtein of unknown function (DUF2905)
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.5079577-CDS-P-littoralis_Contig1327:767..10281680789607.5079577-CDS-P-littoralis_Contig1327:767..1028Pylaiella littoralis U1_48CDSP-littoralis_Contig1327 768..1028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1327.1.1prot_P-littoralis_Contig1327.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1327 768..1028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1327.1.1

>prot_P-littoralis_Contig1327.1.1 ID=prot_P-littoralis_Contig1327.1.1|Name=mRNA_P-littoralis_Contig1327.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MIEPAMRWPLAFVAAAIVLLGAWRYSGGKPMSLPGDIRYEGDGFSVHFPW
VLCIVLSVFGNILMRQLQGAGGVGCGCNAGAASHRP*
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mRNA from alignment at P-littoralis_Contig1327:768..1028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1327.1.1 ID=mRNA_P-littoralis_Contig1327.1.1|Name=mRNA_P-littoralis_Contig1327.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1327:768..1028- (Pylaiella littoralis U1_48)
ATGATCGAGCCAGCCATGCGTTGGCCGCTGGCCTTCGTAGCCGCAGCCAT
CGTTTTACTAGGAGCTTGGAGGTACTCCGGAGGCAAGCCTATGTCGCTCC
CCGGCGACATCCGGTACGAAGGCGACGGGTTCAGCGTACACTTTCCGTGG
GTCTTGTGCATCGTGTTGTCAGTGTTTGGGAATATTTTGATGCGGCAGTT
GCAGGGAGCGGGGGGCGTAGGGTGCGGATGTAACGCGGGAGCGGCTAGTC
ACCGGCCATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1327:768..1028-

>mRNA_P-littoralis_Contig1327.1.1 ID=mRNA_P-littoralis_Contig1327.1.1|Name=mRNA_P-littoralis_Contig1327.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1327:768..1028- (Pylaiella littoralis U1_48)
ATGATCGAGCCAGCCATGCGTTGGCCGCTGGCCTTCGTAGCCGCAGCCAT
CGTTTTACTAGGAGCTTGGAGGTACTCCGGAGGCAAGCCTATGTCGCTCC
CCGGCGACATCCGGTACGAAGGCGACGGGTTCAGCGTACACTTTCCGTGG
GTCTTGTGCATCGTGTTGTCAGTGTTTGGGAATATTTTGATGCGGCAGTT
GCAGGGAGCGGGGGGCGTAGGGTGCGGATGTAACGCGGGAGCGGCTAGTC
ACCGGCCATAG
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