mRNA_P-littoralis_Contig1324.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1324.7.1
Unique NamemRNA_P-littoralis_Contig1324.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.480e-26
Identity = 71/173 (41.04%), Postives = 101/173 (58.38%), Query Frame = 1 
Query:   46 NTEDLAKAIAMAIGATQRGSPPHSGTLQIGTSTL---TSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            N  ++A  +A A+ AT      H G    GT  +   + +DPW G+  K + +++   +F S+M + FQE  VY V+   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I  KFY+EKKE E++RLE E+  +EM   E+ Q Y
Sbjct:   81 NPTNVANIVAQAVKATAEAMSGHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFYQEKKESEKTRLEQEWLALEMRESENPQDY 252
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.640e-26
Identity = 71/173 (41.04%), Postives = 101/173 (58.38%), Query Frame = 1 
Query:   46 NTEDLAKAIAMAIGATQRGSPPHSGTLQIGTSTL---TSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            N  ++A  +A A+ AT      H G    GT  +   + +DPW G+  K + +++   +F S+M + FQE  VY V+   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I  KFY+EKKE E++RLE E+  +EM   E+ Q Y
Sbjct:   81 NPTNVANIVAQAVKATAEAMSGHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFYQEKKESEKTRLEQEWLALEMRESENPQDY 252
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5L5I8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.580e-26
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 1 
Query:   46 NTEDLAKAIAMAIGATQRGSPPHSGTLQIGTSTL---TSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            N  ++A  +A A+ AT      H G    GT  +   + +DPW G+  K + +++   +F S+M + FQE  VY V+   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y
Sbjct:   81 NPTNVANIVAQAVKATAEAMSGHQGFAHTGTFRVNPGSEIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKVWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDY 252
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5K2E9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.110e-25
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 1 
Query:   46 NTEDLAKAIAMAIGATQRGSPPHSGTLQIGTSTL---TSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            N  ++A  +A A+ AT      H G    GT  +   + +DPW G+  K + +++   +F S+M + FQE  VY V+   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y
Sbjct:   81 NPTNVANIVAQAVKATAEAMSGHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDY 252
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.210e-25
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 1 
Query:   46 NTEDLAKAIAMAIGATQRGSPPHSGTLQIGTSTL---TSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            N  ++A  +A A+ AT      H G    GT  +   + +DPW G+  K + +++   +F S+M + FQE  VY V+   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y
Sbjct:  227 NPTNVANIVAQAVKATAEAMSGHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDY 398
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.210e-25
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 1 
Query:   46 NTEDLAKAIAMAIGATQRGSPPHSGTLQIGTSTL---TSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            N  ++A  +A A+ AT      H G    GT  +   + +DPW G+  K + +++   +F S+M + FQE  VY V+   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y
Sbjct:   81 NPTNVANIVAQAVKATAEAMSGHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDY 252
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5KHU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.480e-25
Identity = 69/165 (41.82%), Postives = 104/165 (63.03%), Query Frame = 1 
Query:   61 AKAIAMAIGATQRGSPPHSGTLQIGTSTLTSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            AKA A AI A Q+G    SGTL++   +   ++PW G+    + +++   +F S+M + FQE  V+  ++ E EVKVG +   +G L R F  EVV KS   WNI+I K++Y PI +L++A  SPQ  W+I  +FY+EKK+ E+SRLE +++++EM   ES Q Y
Sbjct:   84 AKATAEAI-AEQQGFA-RSGTLRVNPGS--EIEPWLGSVKNEQNLYIMFDIFHSKMISYFQEEGVHDALELEVEVKVGKRGVSIGDLRRLFGNEVVDKSFKLWNILISKVLYPPIQSLILAFESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEMRESESPQDY 244
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5JW99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW99_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.970e-24
Identity = 69/173 (39.88%), Postives = 99/173 (57.23%), Query Frame = 1 
Query:   46 NTEDLAKAIAMAIGATQRGSPPHSGTLQIGTSTL---TSLDPWTGTRGKYETVHMAALMFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            N  ++A  +A A+ AT      H G    GT  +   + +DP  G+  K + +++   +F S+M + FQE  VY V+   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y
Sbjct:  167 NPTNVASIVAQAVKATAGAMSGHQGFAHAGTFRVNPGSEIDPCLGSVKKEQDLYIMFEVFRSKMVSYFQEEGVYDVLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDY 338
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5KDM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.520e-19
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:  238 FQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            FQE  V+  ++ E EVKVG +  ++  L R F  +V+ KS   WNI++ K++Y PI +L++AC SPQ  W+I  +FY+EKK+ E+SRLE +++++E  + ES Q Y
Sbjct:    5 FQEEGVHDALELEVEVKVGKRGVNVAELRRPFGNDVIDKSFKPWNILMSKVLYPPIQSLILACESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEKKASESPQDY 110
[Close]
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Match: A0A6H5JC89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC89_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.020e-17
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  211 MFTSRMKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSY 555
            +F S+M + FQE  VY ++   + VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I    Y+EKKE E++RLE ++  +EM   E+ Q Y
Sbjct:    4 VFRSKMVSYFQEEGVYDLLGITD-VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNIYQEKKESEKTRLEQKWLALEMRESENPQDY 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1324.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JL48_9PHAE2.480e-2641.04Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KBD4_9PHAE2.640e-2641.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5I8_9PHAE8.580e-2640.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2E9_9PHAE1.110e-2540.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE1.210e-2540.46Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE1.210e-2540.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHU8_9PHAE1.480e-2541.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JW99_9PHAE4.970e-2439.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDM9_9PHAE1.520e-1943.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC89_9PHAE2.020e-1745.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1324contigP-littoralis_Contig1324:29687..30241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.3354843-UTR-P-littoralis_Contig1324:29686..297611680789607.3354843-UTR-P-littoralis_Contig1324:29686..29761Pylaiella littoralis U1_48UTRP-littoralis_Contig1324 29687..29761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.3476167-CDS-P-littoralis_Contig1324:29761..302411680789607.3476167-CDS-P-littoralis_Contig1324:29761..30241Pylaiella littoralis U1_48CDSP-littoralis_Contig1324 29762..30241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1324.7.1prot_P-littoralis_Contig1324.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1324 29762..30241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1324.7.1

>prot_P-littoralis_Contig1324.7.1 ID=prot_P-littoralis_Contig1324.7.1|Name=mRNA_P-littoralis_Contig1324.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MAIGATQRGSPPHSGTLQIGTSTLTSLDPWTGTRGKYETVHMAALMFTSR
MKAGFQERDVYGVVQQEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNI
IIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVE
MLSGESSQSY
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mRNA from alignment at P-littoralis_Contig1324:29687..30241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1324.7.1 ID=mRNA_P-littoralis_Contig1324.7.1|Name=mRNA_P-littoralis_Contig1324.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig1324:29687..30241+ (Pylaiella littoralis U1_48)
AGAAGAGCAGATTCGTCTGGAGCATGAGACGAGTCCGCTCGAGGAAACAC
TGAAGATCTTGCCAAGGCCATCGCGATGGCAATCGGTGCAACACAGCGGG
GCTCACCACCCCACTCAGGCACGTTACAAATCGGAACTTCAACGTTGACT
AGTCTAGATCCTTGGACAGGGACAAGGGGCAAGTATGAGACGGTTCACAT
GGCTGCACTCATGTTCACGAGCCGTATGAAGGCTGGTTTCCAGGAGAGAG
ATGTGTATGGAGTTGTTCAACAAGAAGAGGAAGTGAAGGTTGGGTTGCAG
GAAGCTGACCTAGGAGCACTGGCTAGAGAGTTCGATGAAGAGGTGGTGAA
AAAGTCGGTAATCGCATGGAACATCATCATTGAAAAAATGATGTACCGAC
CAATTCTTACACTGATGATGGCTTGCGGAAGCCCGCAAGCGGCATGGCGA
ATCTTTCTGAAGTTTTATGAGGAGAAGAAGGAGCACGAGAGGAGTCGGTT
AGAGGACGAATTCAGAGATGTTGAGATGTTGTCCGGAGAGAGCAGTCAGT
CATAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1324:29687..30241+

>mRNA_P-littoralis_Contig1324.7.1 ID=mRNA_P-littoralis_Contig1324.7.1|Name=mRNA_P-littoralis_Contig1324.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig1324:29687..30241+ (Pylaiella littoralis U1_48)
ATGGCAATCGGTGCAACACAGCGGGGCTCACCACCCCACTCAGGCACGTT
ACAAATCGGAACTTCAACGTTGACTAGTCTAGATCCTTGGACAGGGACAA
GGGGCAAGTATGAGACGGTTCACATGGCTGCACTCATGTTCACGAGCCGT
ATGAAGGCTGGTTTCCAGGAGAGAGATGTGTATGGAGTTGTTCAACAAGA
AGAGGAAGTGAAGGTTGGGTTGCAGGAAGCTGACCTAGGAGCACTGGCTA
GAGAGTTCGATGAAGAGGTGGTGAAAAAGTCGGTAATCGCATGGAACATC
ATCATTGAAAAAATGATGTACCGACCAATTCTTACACTGATGATGGCTTG
CGGAAGCCCGCAAGCGGCATGGCGAATCTTTCTGAAGTTTTATGAGGAGA
AGAAGGAGCACGAGAGGAGTCGGTTAGAGGACGAATTCAGAGATGTTGAG
ATGTTGTCCGGAGAGAGCAGTCAGTCATAT
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