mRNA_P-littoralis_Contig1321.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1321.6.1
Unique Name	mRNA_P-littoralis_Contig1321.6.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 487 bits (1254), Expect = 1.530e-161
Identity = 235/331 (71.00%), Postives = 269/331 (81.27%), Query Frame = 1

Query:  724 VEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            V + C   YA           PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL   LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVDDIF++GE+ERCDQFGRDLN  VPVKNLGDLRWYSG +YERD + GT+ +SQQTYAEEL  E+GV++GK IPL  G+KL EFD +E   S+PFREL+GSLMWLATQTRPDI+NAVRAVARYCASPK IHWRA LGILGYV RTS LGITF+RG + G++++VF DADYASKAADRRSVSGG     G  I  F   + C
Sbjct:    4 VHVDCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKC 323

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BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 486 bits (1252), Expect = 1.030e-158
Identity = 235/331 (71.00%), Postives = 269/331 (81.27%), Query Frame = 1

Query:  724 VEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            +E  C   YA           PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL   LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVDDIF++GE+ERCDQFGRDLN  VPVKNLGDLRWYSG +YERD + GT+ +SQQTYAEEL  E+GV++GK IPL  G+KL EFD +E   S+PFREL+GSLMWLATQTRPDI+NAVRAVARYCASPK IHWRA LGILGYV RTS LGITF+RG + G++++VF DADYASKAADRRSVSGG     G  I  F   + C
Sbjct:  178 MEADCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKC 497

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BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 466 bits (1200), Expect = 1.880e-153
Identity = 222/310 (71.61%), Postives = 259/310 (83.55%), Query Frame = 1

Query:  787 PTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            PTV+VSSVRLLAALACEQNL L HFDI+QAF+QSELDEDVFM+LP GCG LSG IVKL KSLYGL+QASR WH HLT  L+ LGF+QCLAD CVFRL+E+GRV++ IVVHVDDIFAVG+KERCD+FG DLNE VPVKNLG+LRWYS  +YERD+ERG + +SQQ +AEELA EYG++WG+S+PL   +KL +FD  E     PFRELVGSLMWLATQTRPDI+NAVRAVARYCASPK +HW+AALGILGYV+RTS +GITF+RG + G+++QVF DADYASKA DRRSVSGG     G  +  F   + C
Sbjct:   14 PTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKC 323

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BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 486 bits (1252), Expect = 1.910e-152
Identity = 235/331 (71.00%), Postives = 269/331 (81.27%), Query Frame = 1

Query:  724 VEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            +E  C   YA           PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL   LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVDDIF++GE+ERCDQFGRDLN  VPVKNLGDLRWYSG +YERD + GT+ +SQQTYAEEL  E+GV++GK IPL  G+KL EFD +E   S+PFREL+GSLMWLATQTRPDI+NAVRAVARYCASPK IHWRA LGILGYV RTS LGITF+RG + G++++VF DADYASKAADRRSVSGG     G  I  F   + C
Sbjct:  699 MEADCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKC 1018

[Close]

BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5KGB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB0_9PHAE)

HSP 1 Score: 460 bits (1184), Expect = 2.510e-151
Identity = 221/310 (71.29%), Postives = 257/310 (82.90%), Query Frame = 1

Query:  787 PTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            PTV+VSSVRLLAALACEQNL L HFDI+QAF+QSEL+EDVFM+LP GCG LSG IVKL KSLYGL+QASRQWH HLT  L+ LGFVQCLAD CVFRL+EDG V++ IVVHVDDIFAVG+KERCD+FG +LNE VPVKNLG+LRWYS  +Y+RDLERG + +SQQ +AEELA EYGV+WGKS+PL   +KL +FD  E     PFRELVGSLMWL T+TRPDI+NAVR VARYCASP  +HW+AALGILGYV+RTS +GITF+RG + G+++QVF DADYASKAADRRSVSGG     G  +  F   + C
Sbjct:  100 PTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQKERCDKFGSELNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLTTRTRPDIANAVRPVARYCASPTMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKC 409

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BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE)

HSP 1 Score: 471 bits (1212), Expect = 1.230e-148
Identity = 234/360 (65.00%), Postives = 272/360 (75.56%), Query Frame = 1

Query:  685 LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRW----------------YSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            ++ R V       V + C   YA           PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL   LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVDDIF++GE+ERCDQFGRDLN  VPVKNLGDLRW                YSG +YERD + GT+ +SQQTYAEEL  E+GV++GK IPL  G+KL EFD +E   S+PFREL+GSLMWLATQTRPDI+NAVRAVARYCASP  IHWRA +GILGYV RTS LG+TF+RG +  ++++VFADADYASKAADRRSVSGG     G  I  F   + C
Sbjct:  521 VKSRLVARGDMQRVHVDCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTLVPVKNLGDLRWXXXXXXXXXXXXXXXXYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPIEIHWRAGIGILGYVVRTSDLGVTFRRGSVARLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKC 869

[Close]

BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5L0S9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S9_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 1.880e-147
Identity = 214/286 (74.83%), Postives = 246/286 (86.01%), Query Frame = 1

Query:  787 PTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADR 1644
            PTV+VSSVRLLAALACEQNL L HFDI+QAF+QSEL+EDVFM+LP GCG LSG IVKL KSLYGL+QASRQWH HLT  L+ LGFVQCLAD CVFRL+EDG V++ IVVHVDDIFAVG+KERCD+FG DLNE VPVKNLG+LRWYS  +Y+RDLERG + +SQQ +AEELA EYGV+WGKS+PL   +KL +FD  E     PFRELVGSLMWLATQTRPDI+NAVRAVARYCASPK +HW+AALG LGYV+RTS +GI F+RG + G+++QVF D DYASKAADR
Sbjct:   14 PTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQKERCDKFGSDLNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGNLGYVRRTSWMGIRFERGVVTGMSMQVFVDVDYASKAADR 299

[Close]

BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE)

HSP 1 Score: 470 bits (1209), Expect = 2.130e-146
Identity = 230/331 (69.49%), Postives = 263/331 (79.46%), Query Frame = 1

Query:  724 VEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            +E  C   YA           PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL   LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVD IF++GE+ERCDQFGRDLN  VPVKNLGDLRWYSG  YERD + GT+ +SQQTYAEEL  E+GV++GK IPL  G+KL EFD +E   S+PFR L+GSLMWLATQTRPDI+NAVRAV RYCASPK IHWRA LGILGYV RTS LGITF+RG +  ++++VFADAD A KAADRRSVSGG     G  I  F   + C
Sbjct:  729 MEADCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDFIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRGLIGSLMWLATQTRPDIANAVRAVERYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVARLSMEVFADADCARKAADRRSVSGGLVMCVGGCISWFSRTQKC 1048

[Close]

BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 441 bits (1134), Expect = 3.110e-143
Identity = 209/302 (69.21%), Postives = 251/302 (83.11%), Query Frame = 1

Query:  811 RLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEGLFIMVFPDAEVC 1716
            ++LAALACE NL L HFD+EQAF++SEL+EDV+M+LP GCG+LSG IVKL KSLYGLRQASRQWH  L   L++LGF QC+AD CVFRLIEDG VV+ +VVHVDDIFAVGE+ERCD+FG DLN+ VPVKNLG+LRWYSG +YER+ E G +T+SQQT+ +ELA EYGV  G+S+P+S+G+KL +FD +E AT FPFRELVGSLMWLATQTRPDI+NAVRAVARYCASPK +HW AA+ ILGY +RTS  GI+FQRG +EG +LQ +ADAD+ASKAADRRSVSGG     G  +  F   + C
Sbjct:   46 KMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKC 347

[Close]

BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Match: A0A6H5KJF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF9_9PHAE)

HSP 1 Score: 433 bits (1114), Expect = 6.420e-143
Identity = 203/283 (71.73%), Postives = 242/283 (85.51%), Query Frame = 1

Query:  814 LLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 1662
            +LAALACE NL L HFDIEQAF++SEL+EDV+M+LP GCG+LSG IVKL KSLYGLRQASRQWH  L   L++LGF QC+AD CVFRLIE G VV+ +VVHVDDIFAVGE+E+CD+FG DLN+ VPVKNLG+LRWYSG +YER  E G +T+SQQT+ +ELA EYGV  GKS+P+S+G+KL +FD +E AT FPF ELVGSLMWLATQ RPDI+NA+RAVARYCASPK +HW  A+GILGY +RTS +GI+FQRG +EG +LQ +ADAD+ASKAADRRSVSGG
Sbjct:    1 MLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHVDDIFAVGEREKCDKFGADLNKSVPVKNLGELRWYSGCFYERSKETGRLTISQQTFTDELAAEYGVAGGKSVPMSSGVKLSDFDADEEATDFPFCELVGSLMWLATQIRPDIANAIRAVARYCASPKRVHWDTAMGILGYARRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGG 283

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1321.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JLN0_9PHAE	1.530e-161	71.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KQB8_9PHAE	1.030e-158	71.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JEF2_9PHAE	1.880e-153	71.61	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K2R1_9PHAE	1.910e-152	71.00	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6H5KGB0_9PHAE	2.510e-151	71.29	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K9I1_9PHAE	1.230e-148	65.00	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5L0S9_9PHAE	1.880e-147	74.83	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KKG5_9PHAE	2.130e-146	69.49	Integrase catalytic domain-containing protein n=6 ...	[more]
A0A6H5JFG2_9PHAE	3.110e-143	69.21	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJF9_9PHAE	6.420e-143	71.73	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1321	contig	P-littoralis_Contig1321:29471..32096 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	164328.Phyra71619
Model size	2626
Max annot lvl	164328.Phyra71619\|-
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.24e-41
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QHW0@4776\|Peronosporales
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
Cds size	759
COG category	L

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789606.610764-UTR-P-littoralis_Contig1321:29470..30379	1680789606.610764-UTR-P-littoralis_Contig1321:29470..30379	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1321 29471..30379 +
1680789606.6383238-UTR-P-littoralis_Contig1321:31138..32096	1680789606.6383238-UTR-P-littoralis_Contig1321:31138..32096	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1321 31139..32096 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789606.6236854-CDS-P-littoralis_Contig1321:30379..31138	1680789606.6236854-CDS-P-littoralis_Contig1321:30379..31138	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1321 30380..31138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1321.6.1	prot_P-littoralis_Contig1321.6.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1321 30380..31138 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1321:29471..32096+
coding sequence from alignment at P-littoralis_Contig1321:29471..32096+

protein sequence of mRNA_P-littoralis_Contig1321.6.1

>prot_P-littoralis_Contig1321.6.1 ID=prot_P-littoralis_Contig1321.6.1|Name=mRNA_P-littoralis_Contig1321.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLAD
PCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGD
LRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLE
EFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHW
RAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSG
GW*

mRNA from alignment at P-littoralis_Contig1321:29471..32096+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1321.6.1 ID=mRNA_P-littoralis_Contig1321.6.1|Name=mRNA_P-littoralis_Contig1321.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2626bp|location=Sequence derived from alignment at P-littoralis_Contig1321:29471..32096+ (Pylaiella littoralis U1_48)
TTCACCGTTTTCGCAGCCGCCGCACCTTTCACCGTCGCGGTCGCCGCCGA
TTTTTGATCGAGCGAACGCCCCCTCACCCATTTCCAATGCTTCGTCTTCG
GCGCCGGCCCCCGATCCTGATCCGCCTGATCACTCGTTTTCGCCCTTGCA
TCCGAAAGTGGCTCGAGAAATTGGATTGGAACACGACTATCGGCAGCCCG
GGAGCACGCGATCCGAATCGGAGCGGATTCGGTCGGAGAGGCGGGCGCAG
CAGCAACTGCCGGGAGCCAGGAGCCGGGGTAGCGCGCTCATGCATCAGGC
GAAGATGATGGGGCAAATGGACGAGCAGTGTCTTGTTACATGCATGGACA
CCCGCAAGGCCACCGACGCCGGGCGTAGAGCAGGGAGCGGGAGCACGCAG
CAGGCCCAAGACATCGCGATGGTGACTCTCATGGCGTCGCGGGGGGACAT
CAACCATGCTCTCTCCGAACCACGCCCGCCGCATCAACCGCCGGATCTTC
CTCACTATCAGGCGAAGGACCTCAAAACGCCCAAGACTCACCAGGAGGCG
ATGGCGTCTGAGCACGGACACCTGTGGATGGACTCCGAACGTCGGGAGAT
CTTCGGAGTCTTGGATGCGGGAACTTTCGAACCGGCAGAATAGCAACCAG
TAGAGAACTACATTCACGCAAAGTGGGTGTATAGTTGGAAGGCAGATGAG
TTCGGTTGGCCCACAAAAATGAAGTCGAGATTAGTTGCGCGAGGAGATAT
GCAAAAAGCTGAAATTGATTTTAATGAGTTGTACTCCCCACCGTCGCCGT
TTCAAGTGTTCGTTTGTTGGCAGCATTAGCTTGTGAGCAGAATCTTGGAC
TACGTCATTTCGATATTGAGCAGGCTTTTATTCAGTCTGAGTTGGATGAG
GACGTGTTCATGAAACTGCCGCCTGGTTGTGGTAGCTTGTCGGGAAAGAT
AGTCAAGTTGAACAAGAGTCTGTATGGCTTGAGGCAGGCTTCCAGACAAT
GGCATGGCCACCTTACAGAGCGTTTGATTTCTTTGGGTTTCGTTCAATGC
TTGGCGGACCCATGCGTGTTTCGATTGATTGAGGATGGTAGGGTGGTTAT
CACCATAGTGGTACATGTGGATGACATTTTTGCAGTGGGAGAGAAGGAGC
GGTGTGATCAGTTCGGTCGGGACCTGAACGAAAAGGTACCTGTCAAAAAT
CTGGGAGACTTGCGTTGGTATTCGGGCCTTTACTACGAGAGAGACTTGGA
GAGGGGGACGATAACCGTATCGCAGCAGACGTACGCAGAAGAGCTAGCAG
AAGAGTACGGAGTGAAGTGGGGAAAGAGTATCCCCTTGTCTGCCGGTATG
AAGTTGGAAGAGTTCGATGTGGAGGAGCCGGCAACAAGTTTTCCATTTCG
AGAGTTGGTAGGGTCTCTGATGTGGCTGGCTACTCAAACAAGACCAGACA
TCTCGAATGCCGTACGTGCTGTAGCGAGGTACTGCGCTTCTCCCAAATCG
ATTCATTGGAGAGCCGCTCTTGGTATTTTGGGATATGTGAAGCGAACAAG
TTCGCTGGGGATTACATTTCAGAGAGGTAGGATGGAAGGGGTGACACTGC
AGGTGTTTGCAGATGCCGACTATGCAAGCAAAGCGGCTGATAGAAGGTCG
GTATCAGGGGGCTGGTAATGTGTGGAGGGGTTGTTTATCATGGTTTTCCC
GGACGCAGAAGTGTGTGACGTTGTCTACTACAGAGGCAGAATACGTGGCG
ATGGTCGACATCGTCAAGGAAGTTTTGTTTTTGAGGCAAGTTTGGCGTTT
CATGTTACCAGAGGTGGGGATGCCCTGCATTCCTGTGTTTGAGGACAACC
AAGGGGCTATCCAATTGGCACAGAACCCCATGACCAATTGCAACTCCAAA
CACATCGATGTTCGACATCATTTCATCAGAGAATTGGTAGGAAGGAAGGA
GATTTCTGTGATTCATGTAGCATCGGAGTTTCAGCACGCGGATTTCTTGA
CGAAAGTGTTGACGGTGGAGTCTTTCGAGTTTCACCGTGATTTTGTAATG
AACGTGCGATGATCACCGATTTGCTTTTCTGTTTTCTGTTTTGATTTTAT
TTTGAGAAAATTCGACTCTTGGTAAAGTGTTTTTCGAGGGTAAAATATTT
TGGACGAGTTGGAAATTCACCATGGACTTTGTAGTGTGCCCGAACTCGTT
GTTGATGATTTTAGTTCGGGAACGTTTATTTGCTGAAGTGTTGGAATTTA
TTTTTTTGCTTGTGTTTTGTGTTTGAGCTTTTCGGGAATTGAAAATTTAT
TTTGAGTTTTCTTCTAGGGTGAACTATTCGACTGAGCTGAGCCGCGAGCA
GGGGGGCTAATCGAAGTACTCGTACTCAGTCTATAGACGTAATTCTGGAC
AGAACTATGTATTGTACGTGAGAAGGGTGGTGATGGATTATGGAGGCGTG
ATGGAGCGGGACAATGAGAGAATGCTCCCCTGGCGAGTGATTCTTGTTCT
GCTGTGAGGAAATAATTCAGTTATCTGTGTGTGTTCTACATCGACCGTCT
TGGCGAGGCAAAGTAAGCCCTCGACACTCTACTTCACCCAACAGGAAGAG
CGACCCATGCACACGTTCAGCGTTTA

Coding sequence (CDS) from alignment at P-littoralis_Contig1321:29471..32096+

>mRNA_P-littoralis_Contig1321.6.1 ID=mRNA_P-littoralis_Contig1321.6.1|Name=mRNA_P-littoralis_Contig1321.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig1321:29471..32096+ (Pylaiella littoralis U1_48)
ATGAAACTGCCGCCTGGTTGTGGTAGCTTGTCGGGAAAGATAGTCAAGTT
GAACAAGAGTCTGTATGGCTTGAGGCAGGCTTCCAGACAATGGCATGGCC
ACCTTACAGAGCGTTTGATTTCTTTGGGTTTCGTTCAATGCTTGGCGGAC
CCATGCGTGTTTCGATTGATTGAGGATGGTAGGGTGGTTATCACCATAGT
GGTACATGTGGATGACATTTTTGCAGTGGGAGAGAAGGAGCGGTGTGATC
AGTTCGGTCGGGACCTGAACGAAAAGGTACCTGTCAAAAATCTGGGAGAC
TTGCGTTGGTATTCGGGCCTTTACTACGAGAGAGACTTGGAGAGGGGGAC
GATAACCGTATCGCAGCAGACGTACGCAGAAGAGCTAGCAGAAGAGTACG
GAGTGAAGTGGGGAAAGAGTATCCCCTTGTCTGCCGGTATGAAGTTGGAA
GAGTTCGATGTGGAGGAGCCGGCAACAAGTTTTCCATTTCGAGAGTTGGT
AGGGTCTCTGATGTGGCTGGCTACTCAAACAAGACCAGACATCTCGAATG
CCGTACGTGCTGTAGCGAGGTACTGCGCTTCTCCCAAATCGATTCATTGG
AGAGCCGCTCTTGGTATTTTGGGATATGTGAAGCGAACAAGTTCGCTGGG
GATTACATTTCAGAGAGGTAGGATGGAAGGGGTGACACTGCAGGTGTTTG
CAGATGCCGACTATGCAAGCAAAGCGGCTGATAGAAGGTCGGTATCAGGG
GGCTGGTAA