mRNA_P-littoralis_Contig1316.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1316.13.1
Unique NamemRNA_P-littoralis_Contig1316.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.590e-31
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 RSTLIRRERRSWAAYSKPLLADGTFRSSFRMDHDAFMDLVGMLRPELERNPHMGSLRNGAVPV----GNTLRWLAGGQMHDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPE 336
            R   +RRERRSW  Y+KP++ DGTFR  FRMD+  F  L  MLRP+LERN  MG+LRNG +PV       LR+LAGG + ++  G+VIA+STAY    RVI AIN    L+C WPE
Sbjct:   42 RDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPE 157          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-13
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  336 EQTDYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 521
            E  D    A   + RS+  V+ KCVGAMD LFVR ++P++++  EPN +Y+GHKKGFGMNFQ
Sbjct:   64 EGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.420e-13
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  345 DYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 521
            D ++ A   +RRSTNGVI +CVGAMDGLFVR + P  +    P SFYSGHKK FGMNFQ
Sbjct:  164 DAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.920e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  336 EQTDYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
            E  D    A   + RS+  V+ KCVGA DGLFVR ++P++++  EPN +Y+GHKKGFGMNFQA
Sbjct:  150 EGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.300e-12
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  393 VIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
            V+ KCVGAMDGLFVR ++P++++  EPN +Y+GHK GFGMNFQA
Sbjct:   17 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQA 60          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.790e-12
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 3
Query:  372 KRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
            ++RSTN VI  CVGAMDGLFV    P+ R    P  FYSGHKKGFGMNFQA
Sbjct:  103 RQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQA 153          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.230e-12
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 3
Query:  393 VIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 521
            V+ KCVGAMDGLFVR ++P++++  EPN +Y+GHKKGFGMNFQ
Sbjct:  180 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 222          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.580e-10
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  336 EQTDYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
            E  D    A   + RS+  V+ KCVGAMDG FVR ++P++++  EPN   +GHKKGFG NFQA
Sbjct:   34 EGEDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQA 96          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6A3QK27_9STRA (DDE Tnp4 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QK27_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.080e-10
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 RSTLIRRERRSWAAYSKPLLADGTFRSSFRMDHDAFMDLVGMLRPELERNPHMGSLRNGAVPVGN----TLRWLAGGQMHDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPENRRITTAS 360
            R+ L  R +  W      LLA+  F + +RM   AF+ L  +L P L R+PH   ++ G + V N    TLR+ AGG MHDI++   ++K++ Y+    V+ AINA   L   +P +     AS
Sbjct:   22 RAPLTVRVKLKWDRELNLLLAESQFEACYRMPAAAFVQLEDLLAPTLHRSPHAW-VQRGYISVDNALQLTLRYFAGGSMHDIRRVAGVSKASFYRILWLVVDAINAVSELRLVFPRSPTAREAS 144          
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.560e-7
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 3
Query:  393 VIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKG 503
            V+ KCVGAMDGLFVR ++P++++  EPN +Y+GH+KG
Sbjct:  166 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE4.590e-3154.31DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE1.840e-1353.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M2_9PHAE4.420e-1362.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE5.920e-1353.97DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE5.300e-1265.91DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE7.790e-1266.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE9.230e-1267.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYU2_9PHAE3.580e-1050.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3QK27_9STRA7.080e-1034.68DDE Tnp4 domain-containing protein n=2 Tax=Phytoph... [more]
A0A6H5JVS8_9PHAE5.560e-759.46DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1316contigP-littoralis_Contig1316:36278..36813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72019.SARC_10743T0
Model size524
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.96e-08
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.095666-UTR-P-littoralis_Contig1316:36277..364291680789602.095666-UTR-P-littoralis_Contig1316:36277..36429Pylaiella littoralis U1_48UTRP-littoralis_Contig1316 36278..36429 -
1680789602.1294534-UTR-P-littoralis_Contig1316:36723..368131680789602.1294534-UTR-P-littoralis_Contig1316:36723..36813Pylaiella littoralis U1_48UTRP-littoralis_Contig1316 36724..36813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.107604-CDS-P-littoralis_Contig1316:36429..366151680789602.107604-CDS-P-littoralis_Contig1316:36429..36615Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 36430..36615 -
1680789602.1182785-CDS-P-littoralis_Contig1316:36627..367231680789602.1182785-CDS-P-littoralis_Contig1316:36627..36723Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 36628..36723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1316.13.1prot_P-littoralis_Contig1316.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1316 36430..36723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1316.13.1

>prot_P-littoralis_Contig1316.13.1 ID=prot_P-littoralis_Contig1316.13.1|Name=mRNA_P-littoralis_Contig1316.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MDHDAFMDLVGMLRPELERNPHMGSLRNGAVPVGNTLRWLAGGQMHDIKQ
GHVIAKSTAYQTAVRVIKAINACEALECRWPENRRITTASRPG*
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mRNA from alignment at P-littoralis_Contig1316:36278..36813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1316.13.1 ID=mRNA_P-littoralis_Contig1316.13.1|Name=mRNA_P-littoralis_Contig1316.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=536bp|location=Sequence derived from alignment at P-littoralis_Contig1316:36278..36813- (Pylaiella littoralis U1_48)
CGCAGCACGCTGATCCGGCGTGAACGGCGAAGCTGGGCGGCTTACAGCAA GCCCCTCCTGGCAGACGGGACCTTCAGATCGAGCTTCCGCATGGACCACG ACGCCTTCATGGACCTGGTGGGTATGCTCCGCCCTGAATTGGAGAGAAAC CCTCACATGGGGAGCCTTCGCAACGGTGCGGTCCCTGTAGAGTACTAGGT CGGGAATACTCTGCGGTGGTTGGCCGGTGGTCAAATGCACGACATCAAGC AAGGCCATGTGATCGCGAAGAGCACGGCGTACCAGACGGCCGTCCGTGTC ATCAAGGCGATCAATGCCTGTGAGGCGCTGGAATGCCGGTGGCCCGAGAA CAGACGGATTACGACAGCATCGCGGCCGGGTTGAAGAGGCGCAGCACGAA CGGTGTGATCGCCAAGTGCGTGGGAGCCATGGACGGGCTTTTCGTCCGCA CCCTGAGGCCGAACTCCCGGGACACACATGAGCCCAACTCCTTCTACAGT GGCCACAAGAAGGGTTTCGGGATGAACTTCCAGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1316:36278..36813-

>mRNA_P-littoralis_Contig1316.13.1 ID=mRNA_P-littoralis_Contig1316.13.1|Name=mRNA_P-littoralis_Contig1316.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1316:36278..36813- (Pylaiella littoralis U1_48)
ATGGACCACGACGCCTTCATGGACCTGGTGGGTATGCTCCGCCCTGAATT
GGAGAGAAACCCTCACATGGGGAGCCTTCGCAACGGTGCGGTCCCTGTCG
GGAATACTCTGCGGTGGTTGGCCGGTGGTCAAATGCACGACATCAAGCAA
GGCCATGTGATCGCGAAGAGCACGGCGTACCAGACGGCCGTCCGTGTCAT
CAAGGCGATCAATGCCTGTGAGGCGCTGGAATGCCGGTGGCCCGAGAACA
GACGGATTACGACAGCATCGCGGCCGGGTTGA
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