mRNA_P-littoralis_Contig1315.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KXD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD3_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.920e-19 Identity = 101/309 (32.69%), Postives = 148/309 (47.90%), Query Frame = 1
Query: 841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQS-----QRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVV 1662
SG G +SGSED+ EK K +LD L AIVDAK A++ + E T++ K + + +A+G AI+QGN+RCGPGAK+TSF +A+ +D IA S + S S GG+ S G G R P LGD L M + +LA AG T +EA++FL +G E++ + AVAMM V+++ +L +R + + Y+D+ GE E+PG ES + L Y + F+ + W+ G D R D VT+ +A LV+
Sbjct: 162 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARHDSEETKQKKADQAASHSAMGMWAINQGNARCGPGAKATSFQEAVAADNIALGSRSGAVDGGRASGWVSPASSIGGARPASEASAXXXXXXXXXXXXXXXGLDDDFSPAGSGPSRKVPPLGD-LVKHMGSLTIPMLAESAGVTTEEADYFLNTGFTPDEVQPERAVAMMVVLLDARLCIQRDGDSVQQYMDR---LGEEDCELPGFDGFDESVMFKLLELYGVEKMDFH--SLPDANWFHGGWPID-----RVTPDKVLQ-VTKRVASLLVL 458
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KF37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF37_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.290e-19 Identity = 90/275 (32.73%), Postives = 135/275 (49.09%), Query Frame = 1
Query: 841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAF-----ASAQSQRSDRTSRVDLAGG---------------------------------SSGPSTPPTMGEGVLRFPALGDHLSIVMHAPLADV--LAAKAGSTPQEAEFFLESGG--ELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKF 1530
SG G +SGSED+ EK K +LD L AIVDAK A++ + E T++ K + + +A+G AI+QGN+RCGPGAK+TSF +A+ ++ IA A+A + S R S GG SGPS + P LG+ +V H + LA AG T +EA++FL +G E++ + AVAM V+++ +L +R + +DY+D GE +++PG ES + L Y + F
Sbjct: 162 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARQDSEETKQKKADQAASHSAMGMWAINQGNARCGPGAKATSFEEAVAANNIALGSRSGAAAGGRASGRVSPASSIGGVRPASEAXXXXXXXXXXXXXXXXXXLDDDLSPAGSGPSR---------KVPPLGE---LVKHMGSLSIPTLAQSAGVTTEEADYFLNTGFTVEVQPERAVAMTTVLLDKRLSLQRDGDSVQDYMD---GLGEEDMQLPGFDRFDESVMVKLLELYGVEMMDF 421
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5K0A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A1_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.140e-18 Identity = 82/230 (35.65%), Postives = 124/230 (53.91%), Query Frame = 1
Query: 841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAF-----ASAQSQRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADV--LAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVD 1428
SG G +SGSED+ EK K +LD L AIVDAK A++ + E T++ K E + +A+G AI+QGN+RCGPGAK+TSF +A+ +D IA A+A + S R S GG+ S T+ G G R P LG+ +V H + LA AG + +EA++FL +G E++ + A+AMM V+++ + +RG + +D++D
Sbjct: 152 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARHDSEETKQKKADEAASHSAMGMWAINQGNARCGPGAKATSFEEAVAADNIALGSRSGAAAGGRASGRVSPASSIGGARPASEASTVXXXXXXXXXXXXXXXLDDDISPAGSGPSRKVPPLGE---LVKHMGSLSIPTLAQSAGVSTEEADYFLNTGFMADEVQPERAMAMMTVLLDKRHSLQRGGDSVQDFMD 378
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KRQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ2_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.930e-18 Identity = 100/309 (32.36%), Postives = 144/309 (46.60%), Query Frame = 1
Query: 841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQS-----QRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVV 1662
SG G +SGSEDE EK K +LD L AIVDAK A++ + E T + K E + +A+G AI+QG +RCGPGAK+TSF +A+ +D IA S + S R S GG+ S G G R P LGD L M + +LA AG T +EA++FL +G E++ + AVA M V+++ + +R + +D +D GE +++PG ES + L Y + F + W+ G ER D VT+ +A LV+
Sbjct: 32 SGAGTAESGSEDEVEKNTKVQLDKVLTAIVDAKAAARHDSEETEQKKADEAASHSAMGMWAINQGKARCGPGAKATSFQEAVAADNIALGSRSGAVDGGRASGRVSPASSIGGARPASEASAXXXXXXXXXXXXXXXXLDDDFSPAGSGPSRKVPPLGD-LVKHMGSLTIPMLAESAGVTTEEADYFLNTGFTADEVQPERAVAKMTVLLDKRRSLQRDGDSVQDSMDD---LGEEDMQLPGFDRFDESVMFKLLEPYGVEMMDFR--SLPESNWFHSGWPI-----ERVTPDKVLQ-VTKRVARLLVL 328
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: D7G106_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G106_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 1.160e-15 Identity = 92/318 (28.93%), Postives = 140/318 (44.03%), Query Frame = 1
Query: 838 ASGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQSQRSDRTSRVDLAGGSSGPSTPPTMGE-------------------------GVLRFPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHV--------EIPGMSE--SALSDLCSHYSADAKKFYG-PNKEAHK--WYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVVTG 1668
ASG GN + + E AE++ +Q+++DA+ + + + + A K+G LG+ AI GNSRCGPGA +TSFG+A SD + R R +G SG S+P +G GV P LG L+ ++ AP ++LA+K G T ++A+ FL +G ++ D A MM VI G L R + + +V +AA E + PG+ + L HY+ D F P+ E ++ W V+ P D +D +TR +A LV G
Sbjct: 168 ASGAGNTSADDLEGDE----AEMEKLVQSVLDARTGERADSQQEK----ARKAGHNLLGQSAIDMGNSRCGPGAAATSFGEAHASDERRMSGVIDSRG-RMPGFTPSGSGSGRSSPANIGGVVGFGSGGGSGXXXXXXXXXXXXXGGVTLTPPLGSPLANLLRAPTMEILASKVGVTREQADLFLNAGFRPDQIPHDVATRMMESVIAGYLMGLRDGKSVDRFVRDIVAADEDAYGMDPVDTSKAPGLDRRGNLTHALFVHYNQDYPAFRVLPHAERYRLGWPVL----------EEPSDEIFDGLTRALASRLVFDG 466
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KK82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK82_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.090e-13 Identity = 96/332 (28.92%), Postives = 139/332 (41.87%), Query Frame = 1
Query: 841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDA--IAFASAQSQRSDRTSRVDLAGGS--------------------SGPSTPPTMGEG------------------------VLRFPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGE--------GHVEIPGMSESA--LSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALV 1659
SG+GN D E A+L+ L A+VDAK A + + + A K+G LG+ AI GNSRCGPGA +TSFG+A SD + + R ++ D G S P+T V+ P LG L+ ++ AP + LA+KA TP++A+ FL +G ++ D A MM VI G L A RG + E +V + I A E ++PG+ + + L +Y D F G +A+K+ G E P D +D +TR +A LV
Sbjct: 243 SGVGNTSGDDLDGDE----AKLEKLLIAVVDAKAAERAGSQQEK----ARKAGQNLLGQAAIDMGNSRCGPGATATSFGEAHASDERRMEGVNRTKGRMPGFTQPDSRSGXXXXXXXXXXXXXXXXXXXXRSSPATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVPPLGGALANLLRAPTIERLASKANVTPEQADLFLNAGFRPDQIPYDVATRMMETVIAGYLSALRGNQSVETFVKEVIEADEDADGFQPVATTKVPGLDRAGDLTNALFVNYKQDFNAF-GILPKAYKY------RSGWLVEEGPSDKVFDGLTRALAARLV 559
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5L4P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P2_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.230e-13 Identity = 90/288 (31.25%), Postives = 134/288 (46.53%), Query Frame = 1
Query: 904 LDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAF-----ASAQSQRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVV 1662
D L AIVDAK A++ + E T++ K + + +A+G AI+QGN+RCGP AK TSF +A+ +D IA A+A + S R S GG+ S G G R P LGD L M + +LA AG T +EA++FL +G E++ + AVAMM V+++ +L +R + + Y+D+ GE E+PG ES + L Y + F+ + W+ G D R D VT+ +A LV+
Sbjct: 3 FDKVLTAIVDAKAAARHDSEETKQKKADQAASHSAMGMWAINQGNARCGPSAKVTSFEEAVAADNIALGSRSGAAAGGRASGRVSPASSIGGARPASEXXXXXXXXXXXXXXXXXXXLDDDFSPAGSGPSRKVPPLGD-LVKHMGSLTIPMLAESAGVTTEEADYFLNTGFTPDEVQPERAVAMMVVLLDARLCIQRDGDSVQQYMDR---LGEEDCELPGFDGFDESVMFKLLELYGVEKMDFH--SLPDANWFHGGWPID-----RVTPDKVLQ-VTKRVASLLVL 278
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: D7FL52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL52_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 3.780e-13 Identity = 94/319 (29.47%), Postives = 136/319 (42.63%), Query Frame = 1
Query: 838 ASGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQSQRSDRTSRVDLAGGSSGPSTPPTMGEGVLRF--------------------------PALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGH--------VEIPGMSE--SALSDLCSHYSAD-AKKFYGPNKEAHK--WYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVVTG 1668
ASG GN + + E AEL+ +Q+ VD S+ + A + + A K+G LG AI GNSRCGPGA +T+FG+A S+ + R R +G SG S+P +G GV F P LG L+ ++ AP + LA+K G T ++A+ FL G ++ D A MM VI R + + YV +AA E + PG+ + L +HY+ D A P E ++ W V+ P D +D +TRT+A LV G
Sbjct: 157 ASGAGNTSADDLEGDE----AELEKLVQSAVD----SRAGERADSRQEKARKAGQNLLGLSAIDMGNSRCGPGAAATTFGEAHASEERRMSGVIDNRR-RMPGFTPSGSGSGRSSPANIG-GVAGFGSGSGNSSXXXXXXXXXXXXXXVTLTPPLGSTLAALLRAPTIERLASKVGVTREQADLFLNVGFRPDQIPHDVATRMMEDVIADYFMGLRDGKSVDAYVRDIVAADEDADGMDPVDTSKAPGLDRFGNLTHALFAHYNQDYASSTVLPYAERYRLGWLVL----------EGPSDEIFDGLTRTLASRLVFDG 455
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KCM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM9_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.790e-13 Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1
Query: 841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESD 1095
SG G +SGSED+ EK K +LD L AIVDAK A++ + E T++ K + + +A+G AI+QGN+RCGPGAK+TSF +A+ +D
Sbjct: 32 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARHDSEETKQKKADQAASHSAMGMWAINQGNARCGPGAKATSFQEALAAD 116
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KAQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ5_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.530e-12 Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFAS 1113
SG G +SGSEDE EK K +L L AIVDAK A++ + E T++ K E + +A G AI+QGN+RCGPGAK+TSF +A+ +D IA S
Sbjct: 45 SGAGTAESGSEDEGEKNTKIQLKKVLTAIVDAKAAARQDSEETKQKKADEAAPHSATGTWAINQGNARCGPGAKATSFEEAVAADNIALGS 135 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1315.3.1 >prot_P-littoralis_Contig1315.3.1 ID=prot_P-littoralis_Contig1315.3.1|Name=mRNA_P-littoralis_Contig1315.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=344bp MKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSback to top mRNA from alignment at P-littoralis_Contig1315:13073..18106- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1315.3.1 ID=mRNA_P-littoralis_Contig1315.3.1|Name=mRNA_P-littoralis_Contig1315.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5034bp|location=Sequence derived from alignment at P-littoralis_Contig1315:13073..18106- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1315:13073..18106- >mRNA_P-littoralis_Contig1315.3.1 ID=mRNA_P-littoralis_Contig1315.3.1|Name=mRNA_P-littoralis_Contig1315.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1032bp|location=Sequence derived from alignment at P-littoralis_Contig1315:13073..18106- (Pylaiella littoralis U1_48)back to top |