mRNA_P-littoralis_Contig131.73.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.73.2
Unique NamemRNA_P-littoralis_Contig131.73.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig131.73.2 vs. uniprot
Match: D8LPT3_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT3_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 6.110e-56
Identity = 208/281 (74.02%), Postives = 217/281 (77.22%), Query Frame = 3 
Query: 1620 GSRRNRCLMLGCSKPPRYALPGQKAEYCTLHKMDNYVDVKHPRCESELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRRSAGGGSSSGKHCLSPAKRQRDGPRSIAHDSNAAXXXXXXXXXXXXPGSSMMPFSLRAAVGGAGVLAG---APVSKRGH-------TPARAGGHRRATSESWIDFCPKRVFETTGAKDAAD-GAGVDVVPVPRRSNA-PRRNRHH---APRIANANMASTAAAA 2417
            GS+RNRC M GCSKPPRYALPGQKAEYCTLHKMDNYVDVKHPRCESEL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASRRS  G +   K C SPAKR R+GPRS AHDS AAXXXXXXXX    P  +M  FSL A             AP+ KRGH       TPARAGGHRRATSESWIDFCPKRVFETT  KDAAD GA  +  PVPR + A  RR RHH   +PR  N NMA+ AAAA
Sbjct:   12 GSKRNRCQMPGCSKPPRYALPGQKAEYCTLHKMDNYVDVKHPRCESELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAGAA---KPCSSPAKRARNGPRSFAHDS-AAXXXXXXXXPPALPAGAMPAFSLGAXXXXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETTTGKDAADLGASDNNDPVPRHAAAVARRARHHHQPSPRTVNTNMATIAAAA 288
[Close]
BLAST of mRNA_P-littoralis_Contig131.73.2 vs. uniprot
Match: A0A6H5KQR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR5_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.820e-52
Identity = 321/659 (48.71%), Postives = 343/659 (52.05%), Query Frame = 3 
Query: 1278 VAPTASNPYRTPTAAGAVASRFWDEPGESPSKQQRNSTTPVFSKDHRNRXXXXXXXXXXXXQ---CLFRGCVRRHG-GIQGNRYSSRYCPEHRTPGMSDATTSXXXXXXXXXXXXGGKGSRRNRCLMLGCSKPPRYALPGQKAEYCTLHKMDNYVDVKHPRCESELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRRSAGGGSSSGKHCLSPAKRQRDGPRSIAHDSNAAXXXXXXXXXXXXPGSSMMPFSLRAA---VGGAGVLAGAPVSKRGH-------TPARAGGHRRATSESWIDFCPKRVFETTGAKDAAD-GAGVDVVPVPRRSNA-PRRNRHH---APRIANANMASTAAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGIAGTV-FFQGGS-SGRAGCFGRSLSGTSAATSSDSIS------------------------SVSIAALGGEIANLAAAPISDASPLPSPGSXXXXXSGAATACTSKSTPAPVLPPALTSTRTSSG----FCFSTSFSSGSGEMTTATPSKKQAVAPVATVTMPVTPQSSSDSIGGGSGGSCEGGRGHRFNACDYEASAILLECRSGMLSAEQRI 3107
            +A     PYRTPT A A A+ FW EP ESP KQ                XXXXXXXXXXXX    C+F GC RR     +G R    +C EHR PGM+D T                 GS+RNR                           DNYVDVKHPRCESEL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASRRS  GG    K C SPAKR R+GPRS AHDS A XXXXXXXX    P  +M  FSL AA            AP+ KRGH       TPARAGGHRRATSESWIDFCPKRVFETT  KDAAD G   +  PVPR + A  RR RHH   APR  N NMA+ AAAA           XXXXXX                           +GIA T  FF  GS +GR G  GR+ +  +AA                               SVSIAALGGEIA L AAPISDASPLPS   XXXXX                                 F  S +F SGSG        KK   APVATV                      GG  HRF+A DYEASAILLECRSG L  E+R+
Sbjct:  283 IAAVPEEPYRTPTRA-AAATPFWGEPDESPIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCMFGGCSRRATHAARGERPG--HCSEHRLPGMADTTAVATPG-----------GSKRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXDNYVDVKHPRCESELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAGGGGGAKPCSSPAKRARNGPRSFAHDS-AXXXXXXXXXPPGLPAGAMPAFSLGAAGXXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETTTGKDAADLGTSDNNDPVPRHAAAVARRARHHHQPAPRTVNPNMATVAAAAAVGVDLPATTAXXXXXXSMMAGKGDDYRFGGG-----------GRGIATTTSFFHPGSVAGRTGGGGRAWAPGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSIAALGGEIATLTAAPISDASPLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRVSAAFPSGSGTSMAPKQKKKAVHAPVATVXXXXXXXXXXXXXXXXXXXXXXGG--HRFDASDYEASAILLECRSGTLCGEKRV 913
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.73.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPT3_ECTSI6.110e-5674.02EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5KQR5_9PHAE3.820e-5248.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:338533..346317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3715
Hectar predicted targeting categorymitochondrion
Exons5
Cds size2535
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.73.2prot_P-littoralis_Contig131.73.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 339108..345712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789599.3940074-UTR-P-littoralis_Contig131:338532..3391071680789599.3940074-UTR-P-littoralis_Contig131:338532..339107Pylaiella littoralis U1_48UTRP-littoralis_Contig131 338533..339107 +
1680789599.4666286-UTR-P-littoralis_Contig131:345712..3463171680789599.4666286-UTR-P-littoralis_Contig131:345712..346317Pylaiella littoralis U1_48UTRP-littoralis_Contig131 345713..346317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789599.4081445-CDS-P-littoralis_Contig131:339107..3392581680789599.4081445-CDS-P-littoralis_Contig131:339107..339258Pylaiella littoralis U1_48CDSP-littoralis_Contig131 339108..339258 +
1680789599.4264076-CDS-P-littoralis_Contig131:339374..3403871680789599.4264076-CDS-P-littoralis_Contig131:339374..340387Pylaiella littoralis U1_48CDSP-littoralis_Contig131 339375..340387 +
1680789599.4372568-CDS-P-littoralis_Contig131:343371..3434851680789599.4372568-CDS-P-littoralis_Contig131:343371..343485Pylaiella littoralis U1_48CDSP-littoralis_Contig131 343372..343485 +
1680789599.4457433-CDS-P-littoralis_Contig131:344090..3444621680789599.4457433-CDS-P-littoralis_Contig131:344090..344462Pylaiella littoralis U1_48CDSP-littoralis_Contig131 344091..344462 +
1680789599.4540684-CDS-P-littoralis_Contig131:344827..3457121680789599.4540684-CDS-P-littoralis_Contig131:344827..345712Pylaiella littoralis U1_48CDSP-littoralis_Contig131 344828..345712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.73.2

>prot_P-littoralis_Contig131.73.2 ID=prot_P-littoralis_Contig131.73.2|Name=mRNA_P-littoralis_Contig131.73.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=845bp
MQFRITLWRIRQSKVPTPPRRAEGLVISSTTSASRGSSLCLVLSGVSPSR
KYPNSTAVWHHTSTAAAVKPGTTMDARNNGFERPQKQLQYDRSRSISPRI
VRGPEAMMFQPPGSITSPSASKHHRTSSASASAAEAARERQLYDLPSPKS
HHRSRSLHGPCNIQHWAYDEIQAGGAGRDTNSSSSGCAGSNDSHATIFHN
FHQQQQQLEEEGRYIFRTSAADSAVAATVVPVPRVAPTASNPYRTPTAAG
AVASRFWDEPGESPSKQQRNSTTPVFSKDHRNRQHHHQREQQQQQQCLFR
GCVRRHGGIQGNRYSSRYCPEHRTPGMSDATTSTAAAAAATKTTSGGKGS
RRNRCLMLGCSKPPRYALPGQKAEYCTLHKMDNYVDVKHPRCESELGCVR
QPTFGWEGEKARFCSAHKVDGMLDVKNPRCGEPGCLKRPRYGEEGRRARF
CAAHRFDDMVDLASRRSAGGGSSSGKHCLSPAKRQRDGPRSIAHDSNAAA
AAAAAAAAPSPPGSSMMPFSLRAAVGGAGVLAGAPVSKRGHTPARAGGHR
RATSESWIDFCPKRVFETTGAKDAADGAGVDVVPVPRRSNAPRRNRHHAP
RIANANMASTAAAAGSTTNPNGLSMMGEGDNFSFNEEDEREMDNRNHYRH
RSSSSSSSKGIAGTVFFQGGSSGRAGCFGRSLSGTSAATSSDSISSVSIA
ALGGEIANLAAAPISDASPLPSPGSPSSPLSGAATACTSKSTPAPVLPPA
LTSTRTSSGFCFSTSFSSGSGEMTTATPSKKQAVAPVATVTMPVTPQSSS
DSIGGGSGGSCEGGRGHRFNACDYEASAILLECRSGMLSAEQRI*
back to top

mRNA from alignment at P-littoralis_Contig131:338533..346317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.73.2 ID=mRNA_P-littoralis_Contig131.73.2|Name=mRNA_P-littoralis_Contig131.73.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7785bp|location=Sequence derived from alignment at P-littoralis_Contig131:338533..346317+ (Pylaiella littoralis U1_48)
CCTGGGTCTTCGTTTTCTCTCCCTCTCACAGACGCGCACATCCCCCCAAA
GCCACGGAACTCAAGCAATTGCGAAGTCGAGGGAAGGCAAGCAGGCAGGA
ACTCGCTGGTATCTACACTGGTGAAGTGCGCGCGCAAAGCAAAACAGGGG
AGAGAACAGGGGGGAGGTTGGCGAGAAATTGGGGATTCGGGATCCTCCTC
CATTTTCTCTGATCGAGAGTGAACGAGTTGGAATTTTTTCAGGAATTTTT
ATTTCTTTCAGACGGGAGGCGTACCCAAATTAATCATCAAATCAAGTGTT
AATACGAGCAGCAATCGGGAGGTTGGGGATGGCATTCCACGTGGGAAGGC
CAAGTGCGAGAGGAGAGGACGGTCACCAACAGTATCGCCCTCGCCAGACC
ACCACGATAATCCACCCCAACATGAGCAGTGGAAGAACCAGAACCGTGGG
TATGTTGAGGTGGCCCATCACGAACCCAACGTCTCCCCCGCCATCATCGG
CGCACCCAAAAACGCACGAAGACGACGGCGGGGGCAGCCGCAGCAGCGGC
ATGAGCGGCAGCCTGTACGTGCCCGATGCAATTTCGGATAACGCTCTGGC
GTATACGACAAAGCAAGGTACCAACCCCCCCACGACGAGCAGAGGGCCTC
GTCATCAGCAGCACCACGAGCGCAAGCCGTGGCTCAAGCCTGTGTCTTGT
CTTATCAGGGGTATCCCCCAGTCGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCATCAGCAGCAGCAGCAAGATGGGAACGACAGGAGCGGGGTCT
GCGGCGGTAGCGCTTCCCCTGTCAACATGGTACCACAACAAGAATACCCG
AACTCAACTGCTGTATGGCATCATACCTCCACGGCAGCAGCAGTGAAGCC
GGGCACAACCATGGACGCAAGGAACAACGGCTTCGAAAGGCCACAGAAAC
AGCTGCAGTATGACCGCTCCCGCAGCATCTCTCCACGGATCGTTCGAGGC
CCGGAAGCTATGATGTTCCAACCTCCGGGAAGTATTACATCTCCATCAGC
TTCAAAGCACCACCGTACTTCATCGGCATCAGCATCAGCGGCAGAGGCAG
CGAGAGAGCGTCAGCTGTATGACCTCCCAAGCCCCAAGTCGCACCACCGC
AGCCGCAGTCTTCACGGCCCTTGCAACATCCAGCATTGGGCTTACGACGA
AATTCAAGCCGGTGGTGCAGGCCGTGACACCAACAGCAGCAGCAGCGGGT
GTGCTGGATCCAACGATTCACATGCGACTATTTTCCACAATTTCCACCAA
CAACAGCAGCAGTTGGAGGAAGAGGGGCGGTATATTTTTCGGACGAGTGC
TGCCGACTCCGCCGTCGCCGCTACTGTTGTGCCGGTTCCTCGAGTGGCGC
CAACAGCGTCGAACCCCTACCGTACGCCGACAGCAGCAGGAGCGGTAGCA
TCACGCTTCTGGGATGAGCCGGGCGAATCTCCATCCAAGCAGCAGCGCAA
CAGCACCACCCCCGTCTTCTCCAAGGACCATCGCAACCGACAGCACCACC
ACCAACGGGAGCAACAGCAGCAGCAGCAATGCCTGTTTCGGGGGTGCGTG
AGAAGGCACGGCGGTATCCAGGGGAATCGGTACAGCAGCCGTTACTGCCC
GGAGCACCGCACCCCTGGCATGTCGGACGCCACCACCTCCACGGCCGCCG
CCGCTGCTGCAACAAAAACGACGTCTGGCGGGAAAGGTAGCAGGCGCAAC
CGCTGCCTCATGCTAGGGTGTAGCAAGCCCCCCCGCTACGCGCTGCCGGG
GCAAAAGGCGGAGTATTGCACCCTCCACAAGATGGACAATTACGTCGATG
TGAAGGTGGGTTGGTTCTGACTCGAAGTTAAAGCAGAGCAGTTTTAATGA
ACGAAATGAGGTTGTTCTCCAGATCTAAAATTATTTCGTTTTATTGAGAG
GAGAGAGAGGGAAGGTGTGAGATCTGTGCTGCAGTCATGCCGGAAAAATG
ATGCTGGATCGTGGACTGGGGTAGGACATCGTACATACGAGATGGTATCA
TACGACATGATGCGTAGTTTTCGCAGAAACGCTAACGCTGTTTGCTTTTT
GTTCTTCCTCACGCATCACTGGGTTTCCGTTTTTGAGATAATACTCTTTC
TTTGAAAGTACCGGTATGATATGTTCACGTTGCTATAGTTCTTGCTTCTC
TGATGAGGGAGGTGACCTTAATAATGTGGAGGTTACCTTTTTTTTTGGTC
ATGTAGGGCATACTTCCGTCCGCACAGATCCCTCTTGTCACATCTCCTCT
TTTTACACTTCATGTTTGACATTTTTGCTCACCGGTGCCTCCTCATGTGT
TGACCGATCATGTTTCATATATATACTGTATGCGTACATGCCATTGCGTA
CCAGGCACAGCAGCGGTCTCATTTACTTTGTTGTCGTTCTTATTCTTCTG
TCTTCTGCTGCTCTGTGTGGAGTTCCCTCAAGAGGCAAAGGGCGGAATAT
CCTCAAGAGTGTATGTTTGATTTTTGTTGGGAAACATCGAAGAAAAAAAG
CTTACAACACCTGTCATATTATATAATATGATACCGGTACTTCGTACCCG
GTACTTCGGAGTATCATAGTACCAAGTACGGAGTATCATTTACTCTACAT
CATATCCATGAGATAGCACTCGATGCTTTTTTTTTTTTCAATTTTGCTTT
GTGGGTGTGTGTTGTCATCCCTTTAATTGGACGCCACTCTACACCTCTCC
GGTAGGTAGACGCTCCAACCGGGGTCGCACGGCAGTAGGAAGTCAACACA
GGAGTTTTTTTTGTGCTTCGTACTGTAATATATGGAAAAGAAACAAAGTG
ATACAAAAGAAACCTCCCATGGAGCCCTGCCCGTCCGGCTGTAGTCGCCG
GACCCAAACATACACGAAGTACTGCTGTAATACTTCGTACTTCGAAGTTT
TTAATATCCCAAGTCTCCATCCGCCTCTATCAACAAGTCTCTCAACATAG
TAAGCGTTCAATTTTTTCTTACAATTGACTACCATCGTTCATCTACTTCC
TCAGGTGAACGCCAGGGCCATGTCGCGCTCGGTATGAATCAAGGCGGTTA
TAATTAAAGATGAGATATTTATGTAACCCCCGTTCCATACGTAACGTACT
CTCGATGTTCCGAGTGGATAGAGATACCCGTTGAGGTTCGCCCTTCGAAA
AACGATCGCAACGGCGGTGGTCCTCTGATTGTGATGCGGACGTGGCGTTT
TTTTTTTTTTTGTGTTTTTCCCTTCAGATTTCATGTCTTGAGTGTTCGTG
ACAGCAAGGATCGCTGTTTTTGGTCATGTGTTTCTTGCGTTACGCAGTCA
CAAATCATACTTCGTGCTCACTCTCACGATACCGGTCATACTATACATCA
CAATAAAATATGCACCTGTATTGCTGCTGCGTGGGGGCTGATTTTAACGA
ATCGACCTCGTTCGTGGGGGCTTGCAGAGAAAGGACAGGACATGCAAACA
ATAAACATCAAGTTTGCCAATATACCTCCTGTAGAGCAATGCAGCACGTA
CCTGTTTGATGCTACCGCCGCCGCTGCCAAATCCACCGTACGTGTCATAC
CTGTTTATTGTACCTTTACCGCCCAGATGAAGATAACATTCACAAAAATG
ATCGATATCTCGTTTTTAACGGATAACAATTTCAAAATTCGATTTTCTTA
CTCCAACAGGTACTGCTGTTGGTTGTTGATATTTACAGCAACAGAAGTGT
TGATGCAGGCACAGACCTTAAGAAGAATGCTTACTTCGTTAGCGTACCGA
AAGAGCAATAGGCCTAACCACGAACGAACAAATTTAGAATGATACGGCCG
AGTATCTCTCCCGGGGCGGCCGTAGCCGGGCGGTGAAAAACTCTCGATCG
AGATCGAGTAACCTCCCGGCTTGTGGGGGGTGTTGCTGCTGTAGGGTGCA
TGGTGCGGTTGTCGCGTGACGTGAGCGCTTTGATTGGGCCGAGCCTTCGT
AACACATCAGGAGTGTGTGTTGTCATCCCATGTTCTCTGGCACACTAGTC
TGCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCA
ACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATT
TTTTCTCGCGAGCAGGGGTCCGCGGTCCCTACCCTCGTCGGCGAAGCCGA
ATCTGATTTTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAACACA
TTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGGTTAACGAGGG
ACCACTAGTCCACCGGGGCGACCGTGTATGTGTACAAGTAGAGGGGTTGG
ACCTCGCAGGCAGGAATCTCGAATGAGCAAATCCCAGCATCAGAGAGTGC
GACGGCAGAGAACTTTGCGGTTTTATGTTATGCTGGGTGCGTTTTGTGTC
TTTCAGTGCTTTTGTGCCTCTCGTATCGAAATAAGGGATAGAAGAACAAT
GGTCTTCCCCTGCTCATCCTGCATGTTTACGTTGACGGTTAATCATTTAC
CAGGTTTATTCTCGTCCTCTCCCCCCCCCTCTCTCGCTCTTGATTTGCCT
TTCCCTCGGATCTTTAAACACGCTTCTGGCTCGGGCAATCTATGGCGGCG
GTATTTGATCGGAAAAGTTCGGGGTAAACGTGCGATCGTTAAAAATGACC
ATGTTTTCGGAGTGTTTCAGTGTCGACAAGGGCGCCCCCTCTGATTTCCG
TTCACCGTTGCCGGGAGTGAGAGAACCGTAAGCCGTTTCCCCCCGCTCCC
TCCCCCACGTTTTCCCCGCCCTTGAACTGTTTCTAACAGCACCCCCGCTG
CGAGTCGGAGCTGGGATGTGTCAGGCAGCCGACATTCGGCTGGGAAGGGG
AGAAGGCTAGGTTCTGCAGCGCACACAAGGTGGATGGCATGCTCGACGTC
AAGGTCAGTGGTTTATCTTGTTGTCGTTATTTGTTACTCCGTATGATTAT
AAATTGAATGCGAGAAAGTTTGCGGTAAGGCCGAGACCCCTGGCAAAATC
AACGGTCGGGTTGACAATTGGTACGTAGCATCCGATCATTTTCTCTCGCT
TCCTTCTGGTTGACGTACGTGAGATTTCTAGTTTTCATCGCAAGAGCTCT
CCATCTATCTTTGATCACGTCAAGTTCTGATTCTGCGTCCGTGTCGCGCA
TGTTTGGTAGGGACAGCGGCTGAACTTGGAACACCTTCTCTTGGCTTTAC
AGCGGAGTCCGAGCGATCAGCAGGCCGAATGGGTGTTTGAAGCAATACTT
CGGGTTTGATATTCTTCTTGTGAAGACCCGACCAAGCCGTGTCCTGCTCC
GCTCCCTTCATGCATTCCATCTCGCAGCCCGCTTCATTGCGCCGCTCTTC
TCCCCCCAAGCCCCTACTTTTTAGGACGTTGGTGGCGTCGTGTTTACGCA
TTTTGTTCTGGTTGCTTCTCGTTCCTCCCGCTATCTTCTCCTTTCTCACC
CGTTCTTCCTTCTCGTTTGACCCAACAACTACTGCATCATGTCCGTATCG
ACACACAGAATCCCCGCTGCGGAGAGCCTGGTTGCCTGAAGCGCCCGAGG
TATGGCGAGGAGGGCCGTCGGGCCCGGTTCTGCGCGGCGCACAGATTCGA
CGACATGGTTGACCTCGCCTCCCGTCGGTCCGCCGGCGGCGGCAGCAGCA
GCGGCAAGCACTGCTTAAGTCCCGCCAAGCGGCAACGCGACGGCCCGCGG
TCTATCGCGCACGACTCGAACGCTGCTGCTGCCGCCGCCGCCGCCGCTGC
TGCCCCGTCACCTCCGGGCTCCTCCATGATGCCGTTCAGCCTTCGCGCCG
CGGTTGGCGGTGCTGGTGTTTTGGCGGGCGCTCCAGTGTCTAAGCGGGGG
CACACTCCTGCGCGCGCTGGAGGGCACAGGGTGATCTTTGTTTTTTGTTG
TTTTTTGTTACTTTTGGGGTGGTTACGAAGTTCGGGCTGCATTTATGTTA
CCGGTGAAATCGTTTGGAGACATGGCATGGCGATGGAGTACCGTCGTGTC
CACGCGGCATCATATTTCGATGATTCGCTCTGCTGGCCATTCCTCGTCTT
TCGCGAGGAGGCAATTTTTTGTAGGCTTCGGATGTTTAAAGAGATACTTC
ATATAAAACACACACATACACACACACACTTGCTCTCGCTGTACTCTGCT
GACACCTGCAATGCTTCAGTTGAAGAGCATCTTACATGCCCCATACCGAC
CTCACCCGTTTACTTCGCGTGTATGATGCATGTTTTGTTCTACAGCGCGC
GACCTCGGAGAGCTGGATCGACTTCTGCCCAAAGCGCGTGTTCGAGACCA
CCGGCGCTAAGGACGCCGCCGACGGCGCAGGCGTAGACGTCGTGCCCGTC
CCTCGCCGCTCTAACGCGCCCAGGAGGAACAGACACCATGCTCCCCGCAT
CGCCAATGCCAACATGGCCTCCACAGCAGCGGCGGCAGGCTCAACGACGA
ACCCGAACGGCCTGTCGATGATGGGCGAAGGAGACAACTTCAGCTTCAAC
GAGGAAGACGAACGTGAGATGGACAACCGCAACCATTACCGCCACCGCAG
CAGCAGCAGTAGCAGCAGCAAGGGCATCGCCGGCACCGTCTTCTTTCAGG
GCGGGAGCTCCGGCCGCGCCGGTTGCTTCGGTCGCAGCCTCTCTGGCACC
TCGGCAGCTACCAGCAGTGATAGCATCAGCAGCGTGAGCATCGCGGCGCT
CGGCGGGGAGATCGCCAACCTCGCGGCGGCCCCGATCTCCGACGCGTCTC
CGCTGCCCTCGCCCGGGTCCCCATCGTCCCCGCTGTCAGGGGCGGCGACA
GCATGCACATCAAAGTCGACACCGGCACCGGTGCTGCCGCCGGCGCTGAC
GTCCACGCGGACGTCGTCAGGGTTTTGTTTCTCGACGTCGTTCTCCAGCG
GTAGTGGCGAGATGACGACGGCGACGCCCAGTAAGAAGCAGGCGGTTGCG
CCGGTTGCCACGGTGACAATGCCGGTGACCCCGCAGAGCAGCAGCGACAG
CATTGGCGGCGGCAGCGGCGGCAGCTGTGAAGGGGGCCGCGGCCACCGCT
TCAACGCTTGCGACTACGAGGCCAGCGCTATCCTGCTAGAGTGCCGCTCC
GGAATGCTTTCTGCCGAACAGCGAATATGATAATGTGCGATCGTTTCCGC
CGGCCAATGACACTTTCAAAATTTCGCGCTCAACGTACATGAGTCGCTCG
CCACTCACAAAGGCGGAAAGCTGTGTGCATTATTGGTGCATTATTAGTGC
TCACGCCCCCGCCGACGGCATGCGGCAGGCAGTGCGTGGGCATGCTTTCC
TGTCAGAAGAGGGGAAGGGCGGAAAGATGAAGATCTGGATGTGATGGGTC
AAGTGGCGGGGGGGGAGGTTCACACAAACAACACATTGCTTCAAAAATGC
GCAGAACGGCGTCGGCGCGCTTGACCCACGGGGGTTCCGTGTAAACGAGG
GGGTGCGAGGCGAGAGGCACGCGCGTGGCGAATGAGGCAGAGGGAAACCC
TTGGCATCACCGAGGGAGACATGGCGCGCCCGTGAACGAACGAACATTTA
GAAGTGTTCGATTGATCGATGAGGCACGTTTATTCCGGCCGTGTTCCAAG
GCGTTTCTATTTTCCTTTTTCTTCGGCCTGAGTCGTTCTCTATTCAGAGG
GCTTTCCTCTGCTTACGAGCGGGGCAAGGAACAAAAGCAACACTTTTTTC
ATGGGCATCTATTAAGCGAGAGCGCCGGAGAGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig131:338533..346317+

>mRNA_P-littoralis_Contig131.73.2 ID=mRNA_P-littoralis_Contig131.73.2|Name=mRNA_P-littoralis_Contig131.73.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2535bp|location=Sequence derived from alignment at P-littoralis_Contig131:338533..346317+ (Pylaiella littoralis U1_48)
ATGCAATTTCGGATAACGCTCTGGCGTATACGACAAAGCAAGGTACCAAC
CCCCCCACGACGAGCAGAGGGCCTCGTCATCAGCAGCACCACGAGCGCAA
GCCGTGGCTCAAGCCTGTGTCTTGTCTTATCAGGGGTATCCCCCAGTCGA
AAATACCCGAACTCAACTGCTGTATGGCATCATACCTCCACGGCAGCAGC
AGTGAAGCCGGGCACAACCATGGACGCAAGGAACAACGGCTTCGAAAGGC
CACAGAAACAGCTGCAGTATGACCGCTCCCGCAGCATCTCTCCACGGATC
GTTCGAGGCCCGGAAGCTATGATGTTCCAACCTCCGGGAAGTATTACATC
TCCATCAGCTTCAAAGCACCACCGTACTTCATCGGCATCAGCATCAGCGG
CAGAGGCAGCGAGAGAGCGTCAGCTGTATGACCTCCCAAGCCCCAAGTCG
CACCACCGCAGCCGCAGTCTTCACGGCCCTTGCAACATCCAGCATTGGGC
TTACGACGAAATTCAAGCCGGTGGTGCAGGCCGTGACACCAACAGCAGCA
GCAGCGGGTGTGCTGGATCCAACGATTCACATGCGACTATTTTCCACAAT
TTCCACCAACAACAGCAGCAGTTGGAGGAAGAGGGGCGGTATATTTTTCG
GACGAGTGCTGCCGACTCCGCCGTCGCCGCTACTGTTGTGCCGGTTCCTC
GAGTGGCGCCAACAGCGTCGAACCCCTACCGTACGCCGACAGCAGCAGGA
GCGGTAGCATCACGCTTCTGGGATGAGCCGGGCGAATCTCCATCCAAGCA
GCAGCGCAACAGCACCACCCCCGTCTTCTCCAAGGACCATCGCAACCGAC
AGCACCACCACCAACGGGAGCAACAGCAGCAGCAGCAATGCCTGTTTCGG
GGGTGCGTGAGAAGGCACGGCGGTATCCAGGGGAATCGGTACAGCAGCCG
TTACTGCCCGGAGCACCGCACCCCTGGCATGTCGGACGCCACCACCTCCA
CGGCCGCCGCCGCTGCTGCAACAAAAACGACGTCTGGCGGGAAAGGTAGC
AGGCGCAACCGCTGCCTCATGCTAGGGTGTAGCAAGCCCCCCCGCTACGC
GCTGCCGGGGCAAAAGGCGGAGTATTGCACCCTCCACAAGATGGACAATT
ACGTCGATGTGAAGCACCCCCGCTGCGAGTCGGAGCTGGGATGTGTCAGG
CAGCCGACATTCGGCTGGGAAGGGGAGAAGGCTAGGTTCTGCAGCGCACA
CAAGGTGGATGGCATGCTCGACGTCAAGAATCCCCGCTGCGGAGAGCCTG
GTTGCCTGAAGCGCCCGAGGTATGGCGAGGAGGGCCGTCGGGCCCGGTTC
TGCGCGGCGCACAGATTCGACGACATGGTTGACCTCGCCTCCCGTCGGTC
CGCCGGCGGCGGCAGCAGCAGCGGCAAGCACTGCTTAAGTCCCGCCAAGC
GGCAACGCGACGGCCCGCGGTCTATCGCGCACGACTCGAACGCTGCTGCT
GCCGCCGCCGCCGCCGCTGCTGCCCCGTCACCTCCGGGCTCCTCCATGAT
GCCGTTCAGCCTTCGCGCCGCGGTTGGCGGTGCTGGTGTTTTGGCGGGCG
CTCCAGTGTCTAAGCGGGGGCACACTCCTGCGCGCGCTGGAGGGCACAGG
CGCGCGACCTCGGAGAGCTGGATCGACTTCTGCCCAAAGCGCGTGTTCGA
GACCACCGGCGCTAAGGACGCCGCCGACGGCGCAGGCGTAGACGTCGTGC
CCGTCCCTCGCCGCTCTAACGCGCCCAGGAGGAACAGACACCATGCTCCC
CGCATCGCCAATGCCAACATGGCCTCCACAGCAGCGGCGGCAGGCTCAAC
GACGAACCCGAACGGCCTGTCGATGATGGGCGAAGGAGACAACTTCAGCT
TCAACGAGGAAGACGAACGTGAGATGGACAACCGCAACCATTACCGCCAC
CGCAGCAGCAGCAGTAGCAGCAGCAAGGGCATCGCCGGCACCGTCTTCTT
TCAGGGCGGGAGCTCCGGCCGCGCCGGTTGCTTCGGTCGCAGCCTCTCTG
GCACCTCGGCAGCTACCAGCAGTGATAGCATCAGCAGCGTGAGCATCGCG
GCGCTCGGCGGGGAGATCGCCAACCTCGCGGCGGCCCCGATCTCCGACGC
GTCTCCGCTGCCCTCGCCCGGGTCCCCATCGTCCCCGCTGTCAGGGGCGG
CGACAGCATGCACATCAAAGTCGACACCGGCACCGGTGCTGCCGCCGGCG
CTGACGTCCACGCGGACGTCGTCAGGGTTTTGTTTCTCGACGTCGTTCTC
CAGCGGTAGTGGCGAGATGACGACGGCGACGCCCAGTAAGAAGCAGGCGG
TTGCGCCGGTTGCCACGGTGACAATGCCGGTGACCCCGCAGAGCAGCAGC
GACAGCATTGGCGGCGGCAGCGGCGGCAGCTGTGAAGGGGGCCGCGGCCA
CCGCTTCAACGCTTGCGACTACGAGGCCAGCGCTATCCTGCTAGAGTGCC
GCTCCGGAATGCTTTCTGCCGAACAGCGAATATGA
back to top