mRNA_P-littoralis_Contig1308.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1308.10.1
Unique NamemRNA_P-littoralis_Contig1308.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1308.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1308contigP-littoralis_Contig1308:13115..13685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size571
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.9602263-UTR-P-littoralis_Contig1308:13114..131331680789594.9602263-UTR-P-littoralis_Contig1308:13114..13133Pylaiella littoralis U1_48UTRP-littoralis_Contig1308 13115..13133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.9706187-CDS-P-littoralis_Contig1308:13133..136851680789594.9706187-CDS-P-littoralis_Contig1308:13133..13685Pylaiella littoralis U1_48CDSP-littoralis_Contig1308 13134..13685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1308.10.1prot_P-littoralis_Contig1308.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1308 13134..13685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1308.10.1

>prot_P-littoralis_Contig1308.10.1 ID=prot_P-littoralis_Contig1308.10.1|Name=mRNA_P-littoralis_Contig1308.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MTVYTCPTQGRLQPCIFHVIKEGPAAAGGKSGVGEGRSASCGGRKASDSG
SGAGGDSPCSTQERWNRDGDGDDAGAYPSGEGGDGDGEGRSGAGVSTPGS
RQGAGGGDVNVGSGAEYFKLLNNKKDHHESFRPSAATLASERYPSFDKTR
LGRFRSTDDAMGQLAFTFFTFTFPAVVVAFIVKQ
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mRNA from alignment at P-littoralis_Contig1308:13115..13685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1308.10.1 ID=mRNA_P-littoralis_Contig1308.10.1|Name=mRNA_P-littoralis_Contig1308.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=571bp|location=Sequence derived from alignment at P-littoralis_Contig1308:13115..13685+ (Pylaiella littoralis U1_48)
GGCCTCACCACTGTTTGGAATGACAGTCTACACGTGCCCGACGCAGGGTC
GCCTGCAGCCATGTATTTTCCATGTCATCAAAGAGGGGCCCGCAGCCGCC
GGTGGGAAGAGTGGTGTTGGTGAAGGCAGGAGCGCGAGTTGTGGCGGTAG
AAAGGCGAGTGACAGTGGGAGTGGGGCCGGCGGCGATAGTCCATGTTCGA
CACAAGAAAGATGGAACAGGGATGGGGATGGAGATGACGCAGGAGCCTAC
CCCAGCGGCGAGGGTGGTGACGGTGATGGGGAGGGGAGAAGCGGAGCCGG
CGTTTCAACACCCGGAAGCCGGCAAGGAGCCGGAGGTGGCGATGTAAATG
TTGGGTCTGGCGCAGAGTACTTCAAGCTGCTTAACAACAAGAAAGATCAT
CATGAGTCGTTCCGACCATCAGCCGCGACCCTCGCGTCGGAGCGCTACCC
GAGCTTCGACAAGACGAGACTTGGTCGGTTTAGATCCACCGACGATGCCA
TGGGGCAGCTGGCATTCACCTTTTTCACCTTCACGTTCCCTGCAGTGGTC
GTTGCTTTTATCGTGAAGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1308:13115..13685+

>mRNA_P-littoralis_Contig1308.10.1 ID=mRNA_P-littoralis_Contig1308.10.1|Name=mRNA_P-littoralis_Contig1308.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig1308:13115..13685+ (Pylaiella littoralis U1_48)
ATGACAGTCTACACGTGCCCGACGCAGGGTCGCCTGCAGCCATGTATTTT
CCATGTCATCAAAGAGGGGCCCGCAGCCGCCGGTGGGAAGAGTGGTGTTG
GTGAAGGCAGGAGCGCGAGTTGTGGCGGTAGAAAGGCGAGTGACAGTGGG
AGTGGGGCCGGCGGCGATAGTCCATGTTCGACACAAGAAAGATGGAACAG
GGATGGGGATGGAGATGACGCAGGAGCCTACCCCAGCGGCGAGGGTGGTG
ACGGTGATGGGGAGGGGAGAAGCGGAGCCGGCGTTTCAACACCCGGAAGC
CGGCAAGGAGCCGGAGGTGGCGATGTAAATGTTGGGTCTGGCGCAGAGTA
CTTCAAGCTGCTTAACAACAAGAAAGATCATCATGAGTCGTTCCGACCAT
CAGCCGCGACCCTCGCGTCGGAGCGCTACCCGAGCTTCGACAAGACGAGA
CTTGGTCGGTTTAGATCCACCGACGATGCCATGGGGCAGCTGGCATTCAC
CTTTTTCACCTTCACGTTCCCTGCAGTGGTCGTTGCTTTTATCGTGAAGC
AG
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