mRNA_P-littoralis_Contig1307.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1307.2.1
Unique NamemRNA_P-littoralis_Contig1307.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 3.300e-46
Identity = 88/174 (50.57%), Postives = 113/174 (64.94%), Query Frame = 1
Query:   13 TLYDSPTMNE-GEVIQYWKALAEDWDEENNADNISVALQTIAASTGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVSTKNLRNQACYQAGTGLNATGRGVQLMRKECFTKACRAVWPGDTLLTDAVIAAL 531
            T + S  M++  +V  +W+  AE +  + N   +   L  IAA T   +R+A QAAA AV  R+C H  TP  PLP+I  L ER+AA QQH GLCG +H E+I+ +  T   ER+A   ++TK +RNQACY AGT LNA GRGVQL R+ECFT+ACRAVWP D  L  AV+AAL
Sbjct:   24 TQFTSTIMDDMDDVAAFWQHHAEGFCPQGNPLKVWEELLLIAAQTPERFREAMQAAAVAVGARYCNH-DTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAAL 196          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.300e-42
Identity = 80/160 (50.00%), Postives = 104/160 (65.00%), Query Frame = 1
Query:   46 EVIQYWKALAEDWDEENNADNISVALQTIAASTGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVSTKNLRNQACYQAGTGLNATGRGVQLMRKECFTKACRAVWPGDTLLTDAVIA 525
            +V  +W+  AE +  + N   +   L  +AA T   +R+A QAAA AV  R+C H  TP  PLP+I+ L ER+AA QQH GLCG +H E+I+ +  T   ER+A   ++TK +RNQACY AGT LNA GRGVQL R+ECFT+AC AVWP D  L  A +A
Sbjct:    6 DVAAFWQHHAEGFCPQGNPLKVWEELLLMAAQTPERFREALQAAAVAVGARYCNH-DTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPLPAAKLA 164          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.900e-42
Identity = 77/141 (54.61%), Postives = 97/141 (68.79%), Query Frame = 1
Query:  109 ISVALQTIAASTGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVSTKNLRNQACYQAGTGLNATGRGVQLMRKECFTKACRAVWPGDTLLTDAVIAAL 531
            +S+    IAA T   +R+A QAAA AV  R+C H  TP  PLP+I+ L ER+AAAQQH GLCG +H E+I+ +  T    R+A   ++TK +RN+ACY AGT LNA GRGVQL R++CFT ACRAVWP D  L  AV+ AL
Sbjct:   38 LSILXLLIAAQTPERFREALQAAAVAVGARYCNH-DTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGAEITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDAL 177          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.150e-41
Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = 1
Query:   46 EVIQYWKALAEDWDEENNADNISVALQTIAASTGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVSTKNLRNQACYQAGTGLNATGRGVQLMRKECFTKACRAVWPGD 498
            +V  +W+  AE +  + N  N+   L  IAA T   +R+A QAAA AV  R+C H  TP  PLP+I+ L E +AAAQQH G CG +H E+I+ +  T   ER+A   ++TK +RNQACY AGT LNA GRGVQL R+ECFT+ACRAVWP D
Sbjct:  140 DVAAFWQHHAEGFCPQGNPLNVWEELLLIAAQTPEGFREALQAAAVAVGARYCNH-DTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5KLA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.590e-27
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 AVHPTLYDSPTMNE-GEVIQYWKALAEDWDEENNADNISVALQTIAASTGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVSTKNLRNQACYQAGTGLNA 426
            A+H T + S  M++  +V  +W+  AE +  + N  ++   L  IAA T   +R+A QAAA AV  R+C H  TP  PLP+I+ L ER+AAAQQH GLCG +H E+I+ +  T   ER A   ++TK +RNQACY AGT LNA
Sbjct:   17 ALH-TQFTSTIMDDMDDVAAFWQHHAEGFCPQGNPLHVWQELLLIAARTPVRFREALQAAAVAVGARYCNH-DTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVEERVAGAEITTKRMRNQACYDAGTALNA 157          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.240e-22
Identity = 53/119 (44.54%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  142 TGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVSTKNLRNQACYQAGTGLNATGRGVQLMRKECFTKACRAVWPGD 498
            T  L R  A   A  V   +C H + P  P+P++     +KAAA+ HPGLCGVHH   I+ V       RS     +    RNQACY  G  +N  G+GVQL R +CFT ACRAVWPG+
Sbjct:   37 TSTLLRAFAFEVAAKVGAEYCHHDTAPE-PMPSMALAAAKKAAAE-HPGLCGVHHAHIIAAVRTEDVTSRSGF--TAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGN 151          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5K7F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.310e-19
Identity = 50/125 (40.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   46 EVIQYWKALAEDWDEENNADNISVALQTIAASTGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVSTKNLRNQACYQAGTGL 420
            +V  +W+  AE +  + N  ++   L   AA     +R+A QAAA AV  R+C H S P  PLP+I+ L ER+AAA+QH GLCG +H+E+I+ +  T   ER+A   ++TK +RNQ   +   G+
Sbjct:    6 DVAAFWQHHAEGFCPQGNPLHVWQELLLAAARRPERFREALQAAAVAVGARYCNHDSPP-GPLPDISELPERQAAARQHAGLCGKYHSEHIANIDVTMVEERAAGTEITTKRMRNQCLLRRRDGV 129          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.150e-16
Identity = 53/110 (48.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  175 AAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYTAAVERSADDPVS-TKNL-RNQACYQAGTGLNATGRGVQLMRKECFTKACRAVWPGD 498
            AA AV    C H   P A LP      +  AAA++HPGLCG     Y++GVSY   V  +    VS T N+ RNQ C+ A   L A G GVQL RKECFT+A RAV+PG+
Sbjct:   45 AALAVGAGSCVHDDPPKA-LPRGLTRDQGVAAAKEHPGLCGF----YLAGVSYDDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGN 149          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5KAM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.070e-16
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   46 EVIQYWKALAEDWDEENNADNISVALQTIAASTGHLYRDAAQAAAQAVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYT 336
            +V  +W+  AE +  + N  N+   L  IAA T   +R+A QAAA AV  R+C H  TP  PLP+I+ L ER+AAAQQ+ GLCG +H EYI+    T
Sbjct:    6 DVASFWQHHAEGFCPQGNPLNVWEGLLLIAAQTPERFREALQAAAVAVGARYCNH-DTPPCPLPDISKLPERQAAAQQYAGLCGKYHAEYIANTDVT 101          
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.080e-13
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  202 CAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSYT---AAVERSADDPVSTKNLRNQACYQAGTGLNATGRGVQLMRKECFTKACRAVWPGD 498
            C H   P+  LP      +   AA++HPGLCGV    Y++GVS+    AA ER     V+   L NQ C+ A   L   G GVQL RKECFT+A RAV+PG+
Sbjct:   28 CLHDD-PLKALPGGLTRDQGVEAAKEHPGLCGV----YLAGVSFDDVLAAAERRGVS-VTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGN 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1307.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KJS7_9PHAE3.300e-4650.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE1.300e-4250.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC7_9PHAE2.900e-4254.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE1.150e-4152.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA7_9PHAE1.590e-2746.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE2.240e-2244.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7F9_9PHAE4.310e-1940.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2E9_9PHAE3.150e-1648.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAM8_9PHAE8.070e-1646.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE2.080e-1345.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1307contigP-littoralis_Contig1307:1235..2570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size896
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.8548403-UTR-P-littoralis_Contig1307:1234..15871680789594.8548403-UTR-P-littoralis_Contig1307:1234..1587Pylaiella littoralis U1_48UTRP-littoralis_Contig1307 1235..1587 -
1680789594.8935623-UTR-P-littoralis_Contig1307:2537..25701680789594.8935623-UTR-P-littoralis_Contig1307:2537..2570Pylaiella littoralis U1_48UTRP-littoralis_Contig1307 2538..2570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.8647382-CDS-P-littoralis_Contig1307:1587..17371680789594.8647382-CDS-P-littoralis_Contig1307:1587..1737Pylaiella littoralis U1_48CDSP-littoralis_Contig1307 1588..1737 -
1680789594.8816338-CDS-P-littoralis_Contig1307:2177..25371680789594.8816338-CDS-P-littoralis_Contig1307:2177..2537Pylaiella littoralis U1_48CDSP-littoralis_Contig1307 2178..2537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1307.2.1prot_P-littoralis_Contig1307.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1307 1588..2537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1307.2.1

>prot_P-littoralis_Contig1307.2.1 ID=prot_P-littoralis_Contig1307.2.1|Name=mRNA_P-littoralis_Contig1307.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MNEGEVIQYWKALAEDWDEENNADNISVALQTIAASTGHLYRDAAQAAAQ
AVACRFCAHGSTPVAPLPNITNLKERKAAAQQHPGLCGVHHTEYISGVSY
TAAVERSADDPVSTKNLRNQACYQAGTGLNATGRGVQLMRKECFTKACRA
VWPGDTLLTDAVIAALLLP*
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mRNA from alignment at P-littoralis_Contig1307:1235..2570-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1307.2.1 ID=mRNA_P-littoralis_Contig1307.2.1|Name=mRNA_P-littoralis_Contig1307.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1336bp|location=Sequence derived from alignment at P-littoralis_Contig1307:1235..2570- (Pylaiella littoralis U1_48)
GCAGTACATCCCACTCTTTACGACAGCCCCACCATGAACGAAGGGGAAGT TATTCAGTATTGGAAGGCCCTAGCTGAAGACTGGGACGAAGAGAACAACG CCGACAATATCTCTGTTGCTCTACAAACGATTGCGGCTAGCACGGGACAC CTTTATCGGGATGCAGCGCAAGCAGCTGCGCAGGCCGTTGCCTGCCGCTT CTGTGCGCATGGCTCGACGCCTGTCGCCCCGCTGCCCAACATAACGAACT TGAAAGAAAGGAAAGCCGCGGCTCAGCAACACCCTGGCCTCTGTGGAGTT CATCACACGGAGTACATCAGTGGCGTATCATACACAGCAGCCGTGGAGAG GAGTGCCGATGATCCGGTGTCTACCAAGAACCTACGCAACCAAGTGAGAT AAATAACGAGCTCGAGATGACATGATGTTGACACAGAGATATACGAAGTA CTTCTTAGAAAGAGAGTGTTGTTGGTTTGATACAGCAGAAGCGGTACTGC TGTGCTGTGCTCGGACGAACCTTACACACGCTACTACATTACCTGCTTAG ACTACATACTGTATACAGTTTCCGCTCTTGTACATGCTGCTGTAAAGGTT GCGGGTACAGATCCCGCGAAGGTGTGTTTACAAATTGGGGTATATTTCAG TCAAGCGCAAAACGAGTACAGCAGCAGTAATATACCGAGCGCACAATACT GCTGTACAGCAGCAGTTTTTTGCAAGGGTGGATGCTAAAAGTCCTGAGTA ACGATAATGCAATATACCAGTAGCAGTATAGCAGTAGCACGGCATTGAAC ATATCAGTGTTTGTTCCCCTCGATTACTTTCAGGCGTGCTACCAGGCCGG AACGGGGCTGAACGCGACGGGGCGCGGGGTCCAGCTCATGAGAAAGGAGT GCTTCACGAAAGCATGCCGGGCTGTGTGGCCTGGCGATACGCTTCTGACT GACGCCGTTATTGCGGCTCTCTTGCTGCCCTGAATTGAAGCTGTTAGTTC CAGATCGGAGTAGTCATCGGAGTCTACAGCTACTGACTTCGTAATTCCCA AAGCAAATAATTGCTAGGTCGCGTTTGAATGCAGACGGGGGCTTTCAAGT GCCGTACAATTGGTTCCGAATTGGCGATGGTTGTAACGGGCCTTGGCACC GATAAGTAACGACAATATGTACTTCGAAGTAGATGCGTTATGAGCTGCAA TTCGTAGAGCTGGCAACAAGCCAACCATATATATTTCGAAAAAAGAACAA AGAGGCAACATCACATTGGTTAGGGTTGGCTTGCTGCCAGCTTCCGCAAT GAGCTTCGACGATGCCTCGAAATGGCAACAGTTTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1307:1235..2570-

>mRNA_P-littoralis_Contig1307.2.1 ID=mRNA_P-littoralis_Contig1307.2.1|Name=mRNA_P-littoralis_Contig1307.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig1307:1235..2570- (Pylaiella littoralis U1_48)
ATGAACGAAGGGGAAGTTATTCAGTATTGGAAGGCCCTAGCTGAAGACTG
GGACGAAGAGAACAACGCCGACAATATCTCTGTTGCTCTACAAACGATTG
CGGCTAGCACGGGACACCTTTATCGGGATGCAGCGCAAGCAGCTGCGCAG
GCCGTTGCCTGCCGCTTCTGTGCGCATGGCTCGACGCCTGTCGCCCCGCT
GCCCAACATAACGAACTTGAAAGAAAGGAAAGCCGCGGCTCAGCAACACC
CTGGCCTCTGTGGAGTTCATCACACGGAGTACATCAGTGGCGTATCATAC
ACAGCAGCCGTGGAGAGGAGTGCCGATGATCCGGTGTCTACCAAGAACCT
ACGCAACCAAGCGTGCTACCAGGCCGGAACGGGGCTGAACGCGACGGGGC
GCGGGGTCCAGCTCATGAGAAAGGAGTGCTTCACGAAAGCATGCCGGGCT
GTGTGGCCTGGCGATACGCTTCTGACTGACGCCGTTATTGCGGCTCTCTT
GCTGCCCTGA
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