mRNA_P-littoralis_Contig130.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.7.1
Unique NamemRNA_P-littoralis_Contig130.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig130.7.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.240e-49
Identity = 164/482 (34.02%), Postives = 231/482 (47.93%), Query Frame = 2 
Query:    5 KHLAMVQNAVVYYQCLVTKRRIGTTNTEGRDAHAKQNYLDHTVPAFFAWWDKSCKLPIPAWLTPKLMGQSTLTDQTNRLYTVDGAIW---SKYSEAGKVIKRDFNLLWDSFRTADGELPSGQQETDAWENLQNGLYYTWKKENEKVKMGNKRNKAAKNNPVVLTGGEGDQTLSGESTAAREKAQQXXXXXVAAARQGATADSQSAPISTVSAVAAKWMAQQAAESVRADITGTKEGQATPIKKKGQGGXXXXXXXXXXXXXXGASGDAQRARDVAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGGGKTGAAATAAVEPGGADVGSAAKAHG------LGRHDLANLDGAGGGAGGQQSRAAVKKERHVANSEAKRAEESKATAKFRAEALKAMTAPVESSESSKRLALSVETLTRTAVLRQRLAEEGAE*RRWTFRKGAKESHIAHLEKMGKINTEQWDRAQEELLEIFSNP 1420
            KHL+++QNA  YYQCLVTKR  GT +T+ RDAHA+ NY + TVP+F  WW        P+WLT  LMG +T  D  +   TV    W   S Y  A +            F   DG+LPSG Q  D WENLQ  L++  ++   + K     N  AK+ P+VLTG +  +T +G                V  A  G     ++ P+   S  A ++   +A   V A     K   A  +++   G                 +GDA+   D+ + +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G  +G                            L    L  ++    GAGG+ SRA +K   H  N+E K+ + ++A A  +  AL+A++ P E S+SS  L  SV+ LTR  V ++ L +E AE  RW  R  A ES +A   KMGK +T +    QEELL  + NP
Sbjct:   29 KHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV----WFGPSTYRVAVRSGGTSTESGTGDF-LVDGDLPSGMQAEDIWENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAG----------------VEGAGAGEGGGKEAGPLGH-SEAALRYATAKALARVEA-ARNNKGEDADVVEEIAAGIKPETADEEEGKEPEETAGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSGRPSGTKXXXXXXXXXXXXXXXXXXXEDESKPCLSTKGLKLMN----GAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRALEALSTPPEDSKSSLELVESVKALTRAVVSKELLDQEQAERARWNERVRAMESKLALWGKMGKGSTAEAQALQEELLHAYDNP 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.240e-4934.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:32502..36567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2490
Hectar predicted targeting categoryother localisation
Exons4
Cds size1278
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.7.1prot_P-littoralis_Contig130.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 33830..36551 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789587.8240647-UTR-P-littoralis_Contig130:32501..332301680789587.8240647-UTR-P-littoralis_Contig130:32501..33230Pylaiella littoralis U1_48UTRP-littoralis_Contig130 32502..33230 -
1680789587.8371458-UTR-P-littoralis_Contig130:33362..338291680789587.8371458-UTR-P-littoralis_Contig130:33362..33829Pylaiella littoralis U1_48UTRP-littoralis_Contig130 33363..33829 -
1680789587.8868127-UTR-P-littoralis_Contig130:36551..365671680789587.8868127-UTR-P-littoralis_Contig130:36551..36567Pylaiella littoralis U1_48UTRP-littoralis_Contig130 36552..36567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789587.8520672-CDS-P-littoralis_Contig130:33829..347991680789587.8520672-CDS-P-littoralis_Contig130:33829..34799Pylaiella littoralis U1_48CDSP-littoralis_Contig130 33830..34799 -
1680789587.8640132-CDS-P-littoralis_Contig130:35649..357431680789587.8640132-CDS-P-littoralis_Contig130:35649..35743Pylaiella littoralis U1_48CDSP-littoralis_Contig130 35650..35743 -
1680789587.877212-CDS-P-littoralis_Contig130:36337..365511680789587.877212-CDS-P-littoralis_Contig130:36337..36551Pylaiella littoralis U1_48CDSP-littoralis_Contig130 36338..36551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.7.1

>prot_P-littoralis_Contig130.7.1 ID=prot_P-littoralis_Contig130.7.1|Name=mRNA_P-littoralis_Contig130.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=426bp
MVQNAVVYYQCLVTKRRIGTTNTEGRDAHAKQNYLDHTVPAFFAWWDKSC
KLPIPAWLTPKLMGQSTLTDQTNRLYTVDGAIWSKYSEAGKVIKRDFNLL
WDSFRTADGELPSGQQETDAWENLQNGLYYTWKKENEKVKMGNKRNKAAK
NNPVVLTGGEGDQTLSGESTAAREKAQQQSEEEVAAARQGATADSQSAPI
STVSAVAAKWMAQQAAESVRADITGTKEGQATPIKKKGQGGEGGTQEDEE
DEDQDGASGDAQRARDVAKFGDRPDDWINPFSLAFVLFGRPAGEQEDVDL
KCKVSGGGKTGAAATAAVEPGGADVGSAAKAHGLGRHDLANLDGAGGGAG
GQQSRAAVKKERHVANSEAKRAEESKATAKFRAEALKAMTAPVESSESSK
RLALSVETLTRTAVLRQRLAEEGAE*
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mRNA from alignment at P-littoralis_Contig130:32502..36567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.7.1 ID=mRNA_P-littoralis_Contig130.7.1|Name=mRNA_P-littoralis_Contig130.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4066bp|location=Sequence derived from alignment at P-littoralis_Contig130:32502..36567- (Pylaiella littoralis U1_48)
CTCGAAGCATCTAGCCATGGTTCAAAACGCGGTTGTGTACTATCAGTGCC
TCGTGACGAAGCGCAGGATCGGCACCACCAACACCGAAGGACGGGATGCA
CACGCAAAGCAGAACTACCTCGACCACACCGTTCCTGCTTTCTTCGCGTG
GTGGGATAAGTCCTGCAAGCTGCCGATTCCTGCGTGGCTGACGCCGAAGC
TCATGGGCCAGAGCACGCTGACTGACCAAAGTGAGATGCGGAAATATTTG
TAGGTTGGAGCAACTGCAGCAGCAGCTGCTGCAGCGGCAGCAGGAACAGC
AGTACCGGTACCAGTGTTTGCGTGCCACAAATTCTCAAGCAGGCTCACGC
CAGCTATTTTTTCGCCTCTGTGCTGTTTCAGCCTTTGATTGCGAGTTCAT
CTGCTGGCACATCCAATAGGGTTTGCTGCACACATCATATCTTGGAATAA
CTTTGTCGAGAAAGAAAAAAACAACAGCAGTACTGCTGTACAGTATCTGA
TACCACGTACCTAGAATTTGCTCGTTCCCGAGGACAGCAGTACAACAGCA
GAAGTATATACAAGACCACGCCTCTGCATCACGAACGACGCACATCCAAC
GAACCGTATCGTTATGCGGCAACACTCTGTCTACCTGATTTATTATTAGT
TATTTACATAAAGCTTTGTTTGTATTGCTGCCCAGTGCTTTGGCTTGTTC
ATAGCTTGAAGCCCTTTGCTGAGTGAGACGCTCGAAACCATCCCGACATA
TCAGTGCTTGACGAATAGCCCTACACCCCGTTGGCCTCCTCGTTGCGTCC
CGTCACGTTGTTGCCTCCGTGCAGCTAATAGGCTGTACACAGTTGATGGT
GCTATCTGGAGCAAGTACTCGGAAGCTGGCAAAGTTATTAAGAGGGACTT
CAACCTCCTCTGGGACAGGTGGGCGGTGATGACGGTGTTCCCAAGTACTT
TTGTAGACCTGTTTGCCAGATACAATCGACAAATCAAGATCGAGGTTATA
GGTCCTAGCGCAACAGACCTCGTGGTGTGATACGGATGACACGGCAGTGT
TTGCCTGCAGAGCAACGCAATGAAAATGAATATAGGTACAGGCACCACCC
GTTTGAGAAGCCGAAGACATCTATTGATGAGTGACTAGCGGTCATGTAGG
CGATGGCGCAGGTCCGAGCCCGCATCATATACATCGTCGCTGCAAGATGG
GTGACACGCACTAAATACGACCGACAAACAGCAGCAGTAGACAACATCAG
GGTGCTCTGTTTTCTCGTCTGCTTCGCACGTTTGTGAGCCAATGTTGAAG
GATGGCTTCAAATACCACCAATGCCACGAAAGTTTTTTCGGTTTTCTCGC
AAAAGGGGTGTAAACCTCCGGTTGGTCGCTGTCTCTTGTTGCGTTAAATG
AGCGCCACGAGTAAACGTTACCGCTGCAAGTGTTCCGCCAAGTTCTGTGC
GTTCTTGCGTACCCAACTTCACGCCCCTAGCCGCCAAGGTGTTTGCGTGT
GTGCCAAACACTTTGGTCTGGCTCTCTAAGTTCTCGTTCACGTGATGATT
GGTGTTCATTTTCTCTACTGGTAGTCGCCTCGAGGATCTGACTTTTGTTT
TGCACGTTTGACAATTCCAAGTACCACGCGCAGCTCATACCATCGTGTGT
CGGAGCTCGGACCATCTGTATCTCAACGTGTCGGTCGAAGACGACACAGC
ATGCTCGCCAGATAGATTTCCAATGGTTCTTTGTTGTCTAATCCTCTGCG
TTCCGTGTTCGTTGCCAGTTTTAGGACAGCAGATGGTGAACTTCCTTCAG
GACAGCAGGAGACCGACGCCTGGGAAAACCTGCAGAACGGGCTATACTAC
ACCTGGAAGAAAGAAAACGAGAAGGTGAAGATGGGGAACAAGCGAAACAA
AGCGGCGAAGAATAATCCCGTGGTGTTGACGGGAGGCGAGGGGGACCAAA
CACTGTCCGGGGAGTCGACGGCAGCCCGGGAAAAGGCACAGCAGCAGTCG
GAAGAGGAGGTGGCTGCAGCAAGGCAAGGTGCGACGGCGGATTCCCAATC
CGCCCCAATATCCACCGTGTCGGCGGTGGCGGCGAAGTGGATGGCCCAGC
AAGCAGCTGAGAGCGTGAGGGCAGACATTACCGGTACCAAGGAAGGGCAA
GCGACTCCCATCAAGAAGAAGGGGCAGGGGGGGGAGGGGGGGACGCAGGA
GGACGAAGAGGACGAAGATCAAGACGGGGCAAGTGGAGATGCTCAACGTG
CACGTGACGTGGCTAAATTCGGCGACAGGCCCGACGACTGGATCAATCCC
TTCAGCCTTGCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGA
TGTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCAAGACAGGCGCGGCAG
CAACTGCCGCGGTCGAACCGGGGGGTGCGGACGTTGGTTCTGCGGCGAAA
GCCCATGGGCTCGGCAGGCACGACCTGGCCAATCTGGATGGGGCCGGGGG
CGGGGCCGGCGGTCAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGCATG
TCGCGAACTCAGAGGCAAAGAGGGCGGAAGAGAGTAAGGCCACCGCTAAG
TTTAGGGCTGAGGCCTTGAAGGCCATGACTGCCCCCGTCGAATCTTCGGA
GAGCTCGAAGAGACTGGCCCTTAGCGTGGAAACGCTCACCAGGACTGCCG
TGCTGAGGCAGCGTCTCGCTGAAGAGGGGGCCGAGTAGAGACGCTGGACG
TTCCGAAAGGGCGCGAAGGAATCTCATATCGCCCACCTCGAAAAAATGGG
AAAAATAAATACAGAGCAGTGGGATCGAGCACAGGAAGAGCTGCTGGAGA
TATTTAGCAACCCCCCCGGTGCAACGACGCAGACAGCTACGTTAGAGTTG
TACCCTACCACTACCCTTCAGGGCTCAGGTAGTGGTGCCGGAGCCGGTGC
CGCAGTCGATGGCAGTGGTGGCGGGGCAGGGGGTGCAGCAGGAGACGATG
GGGGTAGAGGAGCTGCAGGCGGTACGCTGGAATTTGCCGGCAAATCGGCG
ATATGAAACAGCCGGGGTGGTGAGGTTTTGATTCTTTTGTTTAGCTGGAG
TGACAGGCAAAAAGGGTGGAGGCCAGGGGGAGGTCTTATTGCGACCGTCA
CGTGTACGGTAAACTGGTATTATCTGATTGTGTTCGTTTTGTGTCGAACC
AACATTTTTTTTTTTTTCGTGTGTGACTGCTATCGTGTGAAACAACACCA
GTTGTGAGAAGAGGGTACTGATGCGCCGGGTCGCACCATTGTTTTATATT
TTATTCATGTTTAATGCTGCTAAACTGCGTGGAATAACACCAGTCGTGAT
CCATCTATGCCAGCATTGGTATGCCAGAAGGGGTCAGTGACACGCAGAGT
CGAACCGAAATTGTTTTTTTTTAAGTTTTTGACTGCTTCTGCGTGAAAAA
CAATAGTAGTTGTGTGTTCGTGTTTACTGCTGCCGCCGTGAACAGTAACT
GGCGGTGTGGTTGACGCCACATTATTTTCGTGAGAAGAGGGATTTGATGC
GCAGGGTCGAACCGAAGTCTTTAGTGAGAGAGGAGTAGCGGGACGTGGGG
TCGAGGTGAGATCTCGCTATTTTTTTATTTTCGTGTTCATAGTCGTGTGA
AACAATGCTGTCGGTGTAAGACTTTTGCGCATGTGTATTTTTGCGCAGCG
CGAGAAGTATTCTGCCAGGTTCCCACTACGAGGTTGTGTATTTGTTACTT
TTGCGAAGATGAGTCACAGTCGAAGCTGACACTGTTTCCGAAGTGTATGC
GTGTATTTACTTTGGCAAGCTTCCCAACGGAGTTGCGCTCGACGAGTATG
CACACAGACAGATAGATACAACACGACGAAAAGTTTCATGAGAGTCCTCT
TTCGAACTGGGTTTAGTTACGTGTTTGCGAGACTGAAAAATGTATGTTTC
GGCTAAAATGCCACCGCAAAAATCAGGGAATTGGACACGATTCAAATACA
TCTCGGTACGCAGATAATAATCGGAGCAGAACATGTGTCGTGCGAAACAA
AAAAGTTGCATACTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:32502..36567-

>mRNA_P-littoralis_Contig130.7.1 ID=mRNA_P-littoralis_Contig130.7.1|Name=mRNA_P-littoralis_Contig130.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1278bp|location=Sequence derived from alignment at P-littoralis_Contig130:32502..36567- (Pylaiella littoralis U1_48)
ATGGTTCAAAACGCGGTTGTGTACTATCAGTGCCTCGTGACGAAGCGCAG
GATCGGCACCACCAACACCGAAGGACGGGATGCACACGCAAAGCAGAACT
ACCTCGACCACACCGTTCCTGCTTTCTTCGCGTGGTGGGATAAGTCCTGC
AAGCTGCCGATTCCTGCGTGGCTGACGCCGAAGCTCATGGGCCAGAGCAC
GCTGACTGACCAAACTAATAGGCTGTACACAGTTGATGGTGCTATCTGGA
GCAAGTACTCGGAAGCTGGCAAAGTTATTAAGAGGGACTTCAACCTCCTC
TGGGACAGTTTTAGGACAGCAGATGGTGAACTTCCTTCAGGACAGCAGGA
GACCGACGCCTGGGAAAACCTGCAGAACGGGCTATACTACACCTGGAAGA
AAGAAAACGAGAAGGTGAAGATGGGGAACAAGCGAAACAAAGCGGCGAAG
AATAATCCCGTGGTGTTGACGGGAGGCGAGGGGGACCAAACACTGTCCGG
GGAGTCGACGGCAGCCCGGGAAAAGGCACAGCAGCAGTCGGAAGAGGAGG
TGGCTGCAGCAAGGCAAGGTGCGACGGCGGATTCCCAATCCGCCCCAATA
TCCACCGTGTCGGCGGTGGCGGCGAAGTGGATGGCCCAGCAAGCAGCTGA
GAGCGTGAGGGCAGACATTACCGGTACCAAGGAAGGGCAAGCGACTCCCA
TCAAGAAGAAGGGGCAGGGGGGGGAGGGGGGGACGCAGGAGGACGAAGAG
GACGAAGATCAAGACGGGGCAAGTGGAGATGCTCAACGTGCACGTGACGT
GGCTAAATTCGGCGACAGGCCCGACGACTGGATCAATCCCTTCAGCCTTG
CCTTCGTGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGATGTGGACCTC
AAATGCAAGGTGTCTGGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGC
GGTCGAACCGGGGGGTGCGGACGTTGGTTCTGCGGCGAAAGCCCATGGGC
TCGGCAGGCACGACCTGGCCAATCTGGATGGGGCCGGGGGCGGGGCCGGC
GGTCAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGCATGTCGCGAACTC
AGAGGCAAAGAGGGCGGAAGAGAGTAAGGCCACCGCTAAGTTTAGGGCTG
AGGCCTTGAAGGCCATGACTGCCCCCGTCGAATCTTCGGAGAGCTCGAAG
AGACTGGCCCTTAGCGTGGAAACGCTCACCAGGACTGCCGTGCTGAGGCA
GCGTCTCGCTGAAGAGGGGGCCGAGTAG
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