mRNA_P-littoralis_Contig13.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.85.1
Unique NamemRNA_P-littoralis_Contig13.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:405272..405997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size524
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789582.923786-CDS-P-littoralis_Contig13:405271..4053811680789582.923786-CDS-P-littoralis_Contig13:405271..405381Pylaiella littoralis U1_48CDSP-littoralis_Contig13 405272..405381 +
1680789582.9323354-CDS-P-littoralis_Contig13:405583..4057221680789582.9323354-CDS-P-littoralis_Contig13:405583..405722Pylaiella littoralis U1_48CDSP-littoralis_Contig13 405584..405722 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789582.943235-UTR-P-littoralis_Contig13:405722..4059971680789582.943235-UTR-P-littoralis_Contig13:405722..405997Pylaiella littoralis U1_48UTRP-littoralis_Contig13 405723..405997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.85.1prot_P-littoralis_Contig13.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 405272..405722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.85.1

>prot_P-littoralis_Contig13.85.1 ID=prot_P-littoralis_Contig13.85.1|Name=mRNA_P-littoralis_Contig13.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
MPTESARITKALLYDKNVRDLQDKPRQQALVLHIYARWPKRAGEDANPKL
GDLVLQAAATDAWMNGIGFIVPEQEWSDRLKT*
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mRNA from alignment at P-littoralis_Contig13:405272..405997+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.85.1 ID=mRNA_P-littoralis_Contig13.85.1|Name=mRNA_P-littoralis_Contig13.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=726bp|location=Sequence derived from alignment at P-littoralis_Contig13:405272..405997+ (Pylaiella littoralis U1_48)
ATGCCCACAGAATCCGCCCGCATCACGAAGGCCCTCCTTTACGACAAGAA
CGTCAGAGACCTTCAGGACAAGCCACGACAGCAAGCGCTAGTTCTACATA
TTTATGCCAGGTGAAGACGACCAACACTAGGTATCCAGAAGAGATGTCGG
CAGCTGTATTTGTCGTTCTTCTGCGTGGACTTCGCGTCGGCCTCCACGGG
CTCATGTTTGGGTCGTACGCTCCTCGTGGTGTCGTCACGGGTCGAGAGGA
GGAGCACATGCCACAGGGGTAATAACACTACAATATGTACACTCTTCGTG
AATGATGTCCAGGTGGCCGAAGAGGGCTGGTGAAGACGCCAATCCTAAGC
TGGGTGACCTTGTGCTACAGGCGGCCGCTACAGACGCCTGGATGAACGGC
ATCGGGTTCATTGTGCCCGAGCAAGAGTGGTCCGACAGGCTCAAGACGTA
AGGCGGCGTACGACCGTAGCGCAAAACGTTTACCGGTATTACTCAAGTAT
TAATCAACCAGGACTTGTGTTTTGTTTGTAACCCACTGCCTGATTGACAG
TGAGCTCTTGTACCTCGTGGACCACGCTCACCCACTGCTTTTTCCCCAAC
GATCGCTGTGATCAGCGCCGTCGTCCGTGAGGATCTGAATGCAACGCATC
AGGCTCAAAGGCTCATCCAATAGTAATGCGTGGAAGAAAAGGGCTGGCAT
CAGTTTTAACCCCCCCCCCCACCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:405272..405997+

>mRNA_P-littoralis_Contig13.85.1 ID=mRNA_P-littoralis_Contig13.85.1|Name=mRNA_P-littoralis_Contig13.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig13:405272..405997+ (Pylaiella littoralis U1_48)
ATGCCCACAGAATCCGCCCGCATCACGAAGGCCCTCCTTTACGACAAGAA
CGTCAGAGACCTTCAGGACAAGCCACGACAGCAAGCGCTAGTTCTACATA
TTTATGCCAGGTGGCCGAAGAGGGCTGGTGAAGACGCCAATCCTAAGCTG
GGTGACCTTGTGCTACAGGCGGCCGCTACAGACGCCTGGATGAACGGCAT
CGGGTTCATTGTGCCCGAGCAAGAGTGGTCCGACAGGCTCAAGACGTAA
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