mRNA_P-littoralis_Contig13.193.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.193.1
Unique NamemRNA_P-littoralis_Contig13.193.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:1014382..1016200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons3
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.1684837-CDS-P-littoralis_Contig13:1014383..10144941680789580.1684837-CDS-P-littoralis_Contig13:1014383..1014494Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1014384..1014494 -
1680789580.18224-CDS-P-littoralis_Contig13:1015399..10154541680789580.18224-CDS-P-littoralis_Contig13:1015399..1015454Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1015400..1015454 -
1680789580.1949148-CDS-P-littoralis_Contig13:1015982..10162001680789580.1949148-CDS-P-littoralis_Contig13:1015982..1016200Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1015983..1016200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.193.1prot_P-littoralis_Contig13.193.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 1014384..1016200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.193.1

>prot_P-littoralis_Contig13.193.1 ID=prot_P-littoralis_Contig13.193.1|Name=mRNA_P-littoralis_Contig13.193.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
AAAAAAAAGAAVANGGSGFGWGRFARTSGDSTGSVGADARGAGPAAGAAH
DGTAEAGAASTAASARAADLDASAAPHPQDSDQAQADRGSQGRSAERAGP
VGAKAPTTGRSKSPNTFLVAGRAASAAS
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mRNA from alignment at P-littoralis_Contig13:1014382..1016200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.193.1 ID=mRNA_P-littoralis_Contig13.193.1|Name=mRNA_P-littoralis_Contig13.193.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1819bp|location=Sequence derived from alignment at P-littoralis_Contig13:1014382..1016200- (Pylaiella littoralis U1_48)
GCCGCCGCTGCTGCTGCTGCTGCTGGTGCTGCTGTTGCTAACGGTGGCAG
TGGTTTTGGTTGGGGCAGGTTTGCTCGCACGAGCGGTGACTCGACTGGCT
CTGTAGGTGCTGATGCCCGTGGTGCTGGTCCTGCTGCTGGGGCTGCTCAT
GATGGGACTGCTGAGGCGGGTGCAGCTAGCACGGCTGCCTCCGCTCGTGC
GGCAGACTTGGACGCCAGGTGGGTGCAGTGCCGTTTTGTTTTAGTGCCGA
AAACGCCTTTTTACCAGGACGGTACAACCTTGGGCCCCGTTGCTCTCGAA
CTGCTTCGTGCTGGGCTCTTCTTTTTTTCAGGAGCAAGAGAGCACCTTCA
AGACACATCGCGGTCTAGCTTTTGGCATTGAGGCAATGAGCTATCGGTCA
ACACGCCCTTGCTGTGTTCACATTCTTTGCTACCTTCAGGGGGGGGAGGG
GGGCGCTACTACGTCATTGCGGTGCACCGTCACTGACCTGGCAGCGCCCT
TTGAAATAAAGATGTCCACGCTCAGCCCTCAAACATGCTGCAACAGTTGC
GACGGTTCTGCACGAGAGCTCCAAAACAATTCACGCCACCAGTATCACTG
CATGCTTTTAAAACGACCGTGGTCCGCTAGTGGTCCCACGTGAGAAGCGA
GAGCTTTCCTGTGCCGAGGGCGCCTGTACCTCCGTGTTCACCGTCTGATG
CTGCTGCTGCTGCTGCTTCTCCTGCCGCTGCTGCTACCCTTGGCAGTGCT
GCACCACACCCCCAAGACAGCGATCAAGCCCAAGCCGACCGAGGCTCGCA
GGTATCTACAAAATGTTGCTAGTTTTGGGGAACGGGGGTGAATTTCTGGC
AACGCACATGCGAAGCCCAAGTAGCAGTGTGACTCCGAGCCCTCGTGCTG
TCGCCACCGCTGATCTCAACTCTGTCACGCGAGGTCACGGTGTGTCATGT
GGGATTTGCTCGTTGTGTTGCGTTTACATGTCTCGCAGACACAGATTGCT
GACTGCTCGCCGAGATCTGCAGTATGCATCCGGTGGCCGATGCAGAGGGC
GTGTGAACGCTCATCAGCGAGCCACGCATGTGTTGACTGGGAGCTGGGTT
CAGGCTGTACAGTACGGGGCCCAAACTTCCTGAACAGCGTCAAATCGGGT
TGCATACCTGATTATTGCACCCCACCTAGACTGTACTCAAAAGCCGACGA
GGGAGGGTAGGAACCGACCCTATTCACGATACATGAAGACCGAGGCCTGC
AAGTGCCGCAGAAGTAAGGTGGATAATAGTAAAAATATGATGGCCTTTCT
CCTATGTGATCAACCCCGGCTTGTAAGCCCACACGTACCTAAAGGTGTAG
ACTGGCGTCCGGAACAAATGAGATGATAATACACAACGATCTTCTTTTCG
GGGGGGTTTTACGTTCTTTCGTCTGACGTATAACAACTTTCAAGCGGGGC
ATCACACACAATTGTCTCTGTCCGTGAGACCCCCACCTTCCTTCTGCTGC
TGCTGCTGTACACCAGATTGCTTTCCCTCTCCAGTAAAACACTTCGAAAC
AAGCAGTCCTGACGGCGTTGGAACGCAGGTGTCCGTCGAATCCAGATTCC
TTCACCCACCCAACCCGGCCTCCTTGCCTCAAAAGAGTTTTCAAGCTAGA
TTTTTCAGGGACCAACCCTGCTCCTGTTCCCGTCCCGCACCACCTGCCTC
CGCCAGGGACGCTCTGCAGAGCGGGCGGGGCCTGTCGGGGCCAAAGCTCC
CACCACGGGGAGGTCGAAGTCTCCCAACACTTTCCTGGTGGCAGGAAGAG
CGGCGTCGGCGGCGTCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:1014382..1016200-

>mRNA_P-littoralis_Contig13.193.1 ID=mRNA_P-littoralis_Contig13.193.1|Name=mRNA_P-littoralis_Contig13.193.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig13:1014382..1016200- (Pylaiella littoralis U1_48)
GCCGCCGCTGCTGCTGCTGCTGCTGGTGCTGCTGTTGCTAACGGTGGCAG
TGGTTTTGGTTGGGGCAGGTTTGCTCGCACGAGCGGTGACTCGACTGGCT
CTGTAGGTGCTGATGCCCGTGGTGCTGGTCCTGCTGCTGGGGCTGCTCAT
GATGGGACTGCTGAGGCGGGTGCAGCTAGCACGGCTGCCTCCGCTCGTGC
GGCAGACTTGGACGCCAGTGCTGCACCACACCCCCAAGACAGCGATCAAG
CCCAAGCCGACCGAGGCTCGCAGGGACGCTCTGCAGAGCGGGCGGGGCCT
GTCGGGGCCAAAGCTCCCACCACGGGGAGGTCGAAGTCTCCCAACACTTT
CCTGGTGGCAGGAAGAGCGGCGTCGGCGGCGTCG
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