mRNA_P-littoralis_Contig13.186.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.186.1
Unique NamemRNA_P-littoralis_Contig13.186.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:977805..980873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.1017141-CDS-P-littoralis_Contig13:977804..9778611680789580.1017141-CDS-P-littoralis_Contig13:977804..977861Pylaiella littoralis U1_48CDSP-littoralis_Contig13 977805..977861 -
1680789580.1200013-CDS-P-littoralis_Contig13:980634..9808261680789580.1200013-CDS-P-littoralis_Contig13:980634..980826Pylaiella littoralis U1_48CDSP-littoralis_Contig13 980635..980826 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.1332502-UTR-P-littoralis_Contig13:980826..9808731680789580.1332502-UTR-P-littoralis_Contig13:980826..980873Pylaiella littoralis U1_48UTRP-littoralis_Contig13 980827..980873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.186.1prot_P-littoralis_Contig13.186.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 977805..980826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.186.1

>prot_P-littoralis_Contig13.186.1 ID=prot_P-littoralis_Contig13.186.1|Name=mRNA_P-littoralis_Contig13.186.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
MAAVIGRDTSETKTREWACVEEDNIPPDGFVAVSLLKKSTTDKFASLRTS
QSEVDQAAGTGHVKIVTLEWANSLGLHGFERLM
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mRNA from alignment at P-littoralis_Contig13:977805..980873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.186.1 ID=mRNA_P-littoralis_Contig13.186.1|Name=mRNA_P-littoralis_Contig13.186.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3069bp|location=Sequence derived from alignment at P-littoralis_Contig13:977805..980873- (Pylaiella littoralis U1_48)
CTCTGTTGCAAAATTATGCGCTAAAACTATGGGTACTGTGATTAGACATG
GCGGCGGTCATCGGGAGAGATACTAGTGAAACAAAAACACGAGAATGGGC
GTGCGTCGAGGAGGATAACATTCCTCCAGATGGATTTGTGGCGGTATCCC
TACTGAAGAAGTCTACCACCGACAAGTTCGCATCGCTCAGGACATCTCAG
TCAGAGGTTGACCAAGCGGCAGGCACAGGCCACGTAAAGGTGAAGGCATA
CTTATCACTAGCTTGCGGTTCGACCAATGTGCGTGTGTCAGTTTTCGTCC
CATCTAATCTGGACACAAGTTTGCACTTTTCGGTGTAAGTTGGGCGCACC
AGCCGGGGTTGTGCCGGAGGAAAGGCCAAAACACACAGCAAGTTCTTTGT
ACAAAAAAAATAGTGAAGTATATGAAGTACTTTTGAGAGAAGGTATGTAC
GAGGTATGTGTGTACCGTATTCCACACAAGATACCACACCCCGTGTTAAG
CTTTTTGCATTCCGTATAGCTCCACAACCAGGAGGGTGCTACTGCCGAAA
AGGGTGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTATGACGGGCTGTT
TGGTGTTCGCACCCTCCTGGTTGTGGAGCAATACGGAATGCAAAAAACCT
AACACGGGGTGTGGTATCTTGTGTAGAATACGGTAGGCCAGTGACCACCA
AAAAAAAAAAAACAGGTGCGCCAAGGGCCGAATTCAGACATAGTGAGATT
AAAATTTTCTACTTAGAGCCAGCGAACAAAGAAAACAAACGTGTATTCTG
CTGTAGAGAGCAACAAGAGAAAGGAAAAAATATTACCCGAATCGCAAGGC
ATAAACGCAGTAATCAGGACAGGGCGAAGGGGGGGGGGGCGCAATGAGAC
GGTGGGATTCGCAATAGAAAAGTGTGCTGTGATAGCAAGTCAGTCAATCT
AGCACATGTTGTGCTACTCGTTGCGTCTCTTCCCTATTGACCTCCTTTGC
TGCCGTTGTCGCATCATTCTGAATCTTTCTGCGCTTCCTTTCCCGATATC
CCCCCGTCCCCCTTTCTCCTCCTTCTCTCTCGTCGGCGCTGCAACATGTA
TTGTCTCGTTTTCCGCTCACTTCCTGCGTGCATCCTTCTCACCCTCGTGC
CGGGCGGTCGCAAACCTCGCAGCCCCCTTGCGGTGCTTGCTTCTCTTTCA
TCGCGGAAGGCAGAAAGTAGTTAGTTGTTTTGCTCGTTGTGGTGGCGTGA
CGACCCGTTGAACAGGCGCGACTTGCTTGCAAACAGATGTTTACCGATTG
CGGTGATCGCAGAAAAACAGCTGCCGACTAAAGTGGTGCCGTTTCGAAGG
TTTACGGAGCCGTCTGCGACAGCAATCATTATGTGCTTCAACGCTGGTTA
CAGATGCCGCGATCCACGGGAGGAGACTACATGCAGCAGACGAGAGAAAA
ATAGATCGATGTGAAGGGTCAGGGTACTTGCAAGGCGACCGAGTCTGGCT
CACTCTGAATTTTTACGCCAAACACTCTCTTCCCAACACCCGACACAGTC
CAGCCCGTCTCCCATCCATCGCCTAACGTATTGGGTGCGTAAACATTTTA
TCCTCGACCCGAATCAACGAGAGCTGACAGCCCAGAGGGTTTAAGTCTGC
TGTTGTTTTACAAATGATTCGCAGCGTATCCTACAGTTTCGTTCATCCGC
TACACATCGCAGGTGCTAGATCGGCTGTGGAAGGAAAGCGACGGAGCTGT
GCACCCGAGCTCGACCGGCTTACAGATGGCTGTGGTTGCCGGCAAGGTGT
AGCGTTGGACAAGATCTCATGAGATCCTGACAACCATACGATTGCTCGTG
GCGACACTGCTGTTCTCTAGGCTCCAAGTATTCGCGTTGTTGTGATATCT
CTGACGTGAAAGAGAAGCAAAACTCGGTTGTGGGCCTCCTCTTGTGTGAC
TCCGGCTGATACGCTCGTATGTGCCGAAAGGTGTAGACTGGCCTCCAAAA
TCAAAGATGGGGTGACAAAACACACACCGTGAGAAGAAAGGTGGTGAACA
AACAAATCCTGTGTTGACCTTCCTCCTGTGTCATCCCGGCTGCTGCCCCC
GCATATATCGAACGGTGTACACACTAGCGTCCAAAGTGGATGGGAGACAG
GACACACATGCACGCGCTGTAAACGATACAAGTGTTGTTCCCTAAACGAT
TGGATCTCACAACGGTTCTTGGGAGTGGAAAACGACCATGTATGTCGCGA
GTAAACAAGCACATTCATTCGACTGAATAGTTGACGAGAGTAAGGGGCGG
TTGAACCCTTCTCGCGCTAATAGTCGAAAGGCATAAAGGCAAGCATCGCA
CAAAAAAGGTGAAGGGAGCAACATAAAAATTCCTGTGTGACCTTCCTTCT
GTGCGACCCCGGCTGGTGCACCCACTTCATACCTAAAGTTGCAAACCGGT
GCCCAGAATAAATGGGACGAAATCACACACAAACACACAAACACAAGAAG
AGACGTACAGGGTTTGATACTTGCGCGTAGTTCACGCAATACACACTCGG
TGTGCTTCCTGTCCCCATATACACGTCGGGCGTTTTGATGCGTGTCATAG
CATTATTGGAATTTGTCCAGACAGCAAGAATGTTTGGGTTCATCTTGAGG
GATGAAGGTCCAGAAAATAATCGCTGCGCCACGGTGCGATCGTTTCAGGG
GGCTTTCACAACGTGTTGTCATTTACTTAAAACTACACGTTCCAGGCAGC
AACTAGGAATGAAGGTTACACTATTTTTCCTCCCACCCATGATGGAGGAC
ACTTTGCGAAAAAAAATGCAAATCGAAGGCCGACGTAGAGCAGGACCCAA
ACTGTTCGATGTCGCGTGAATCGCGTGGGGGAAAATGCTACCTTGGGGGC
AGCGTTAGAGCAAACACCTTTGATGTGCTGGTAGGCTCACTCTCACATTT
GCTGTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCTCCAATCGAAACACTC
TTTCTCGGGCAGATCGTCACACTCGAGTGGGCCAACTCTCTAGGACTGCA
CGGCTTTGAAAGACTAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:977805..980873-

>mRNA_P-littoralis_Contig13.186.1 ID=mRNA_P-littoralis_Contig13.186.1|Name=mRNA_P-littoralis_Contig13.186.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig13:977805..980873- (Pylaiella littoralis U1_48)
ATGGCGGCGGTCATCGGGAGAGATACTAGTGAAACAAAAACACGAGAATG
GGCGTGCGTCGAGGAGGATAACATTCCTCCAGATGGATTTGTGGCGGTAT
CCCTACTGAAGAAGTCTACCACCGACAAGTTCGCATCGCTCAGGACATCT
CAGTCAGAGGTTGACCAAGCGGCAGGCACAGGCCACGTAAAGATCGTCAC
ACTCGAGTGGGCCAACTCTCTAGGACTGCACGGCTTTGAAAGACTAATG
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