mRNA_P-littoralis_Contig13.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.16.1
Unique NamemRNA_P-littoralis_Contig13.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: D7FLY8_ECTSI (Endothelial protein B9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY8_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 1.340e-151
Identity = 222/278 (79.86%), Postives = 235/278 (84.53%), Query Frame = 2 
Query:   83 MTTLAALTRTITREKTSFGKTVDPFNKTSSGHLPPAAGGGTQAPS-----GASSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGYNRPERAQGDDQGPQFGPHSTGAMGATNSHHGASSSIFGNTTGSKPSLVG 901
            MTTLAA+TRTITR+K +FGKT DPFNKT++G  P A              GAS+FF+MCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDT+VVWNFPIDVTFK+TNAFGWPRIALSVFRVDDMGRDTVVGYGSVL+PTQ GRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVR SG VKVSLDVMTRGM +FGYNRPE  QG  Q  +F  +S G      S H  SSSIFGNTTGSK S VG
Sbjct:    1 MTTLAAMTRTITRDKPAFGKTTDPFNKTAAGVSPAATASXXXXXXXXXXXGASNFFIMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMVDFGYNRPEGMQGVSQDQRFESYSGGG----GSSHRVSSSIFGNTTGSKTSFVG 274
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A6H5KBF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF1_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 4.390e-97
Identity = 151/222 (68.02%), Postives = 166/222 (74.77%), Query Frame = 2 
Query:  236 VMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGYNRPERAQGDDQGPQFGPHSTGAMGATNSHHGASSSIFGNTTGSKPSLVG 901
            ++C  ++   +FGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDT+VVWNFPID+TFK+TNAFGWPR+ALSVFRVDDMGRDTVVGYGSVL+PTQ GRHERVAHMYAPQPSSMLQRFRAWVSGAYPE                             V+  GM +FGYNRPE  QG  Q  +F  +S G  G+T   H  SSSIFGNTTGSK S VG
Sbjct:    1 MLCACRLLAPQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDITFKSTNAFGWPRLALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPE-----------------------------VIMLGMADFGYNRPEGMQGVSQDQRFESYSGGG-GST---HRVSSSIFGNTTGSKTSFVG 189
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A7S1U2U9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2U9_9STRA)

HSP 1 Score: 246 bits (629), Expect = 4.100e-78
Identity = 118/229 (51.53%), Postives = 156/229 (68.12%), Query Frame = 2 
Query:  206 QAPSGASSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGYNRPERAQGDDQGPQFGPHSTGAMGATNSHHGASSSIFGNTTGSKPS 892
            +APS  S F +M TGQ+  G+F   DNLYCRY+L FG+DW + HG D+GLSQIA+R GG D A+VWNFPID TFK+TN FGWPRIA+SV+ VD +GRD + GYGSV++PT  G++ERV HMYAP  SS+ Q+  AW+ G  PEFFDS F  +G GR+VTRVR  G V+V+L+V+ RG+  FGY+            +      GA  +T+    A  +++G+T  S+ S
Sbjct:   14 EAPSAPSEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYDYXXXXXXXXXSERLAS-LAGAFASTDKDARAEKTVYGSTLRSETS 241
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A7S1U318_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U318_9STRA)

HSP 1 Score: 246 bits (628), Expect = 4.770e-78
Identity = 110/184 (59.78%), Postives = 140/184 (76.09%), Query Frame = 2 
Query:  206 QAPSGASSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGYN 757
            +APS  S F +M TGQ+  G+F   DNLYCRY+L FG+DW + HG D+GLSQIA+R GG D A+VWNFPID TFK+TN FGWPRIA+SV+ VD +GRD + GYGSV++PT  G++ERV HMYAP  SS+ Q+  AW+ G  PEFFDS F  +G GR+VTRVR  G V+V+L+V+ RG+  FGY+
Sbjct:   14 EAPSAPSEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYD 197
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: F0YE40_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE40_AURAN)

HSP 1 Score: 226 bits (577), Expect = 7.340e-71
Identity = 106/182 (58.24%), Postives = 134/182 (73.63%), Query Frame = 2 
Query:  224 SSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGYNRPER 769
            S+FFV+  GQVE GEF   D+LY RY  SFG DW +V G++TGLSQIA++A G D +VVWNFP+D++FK+TNA GWPR+++SV+ VD +GRD V GYGSVL+P   G ++R  H Y P PSS+ QRF +W +G Y EF+DSKFV +GE REVTRV  +G VKV  DV+TRGM   GY    R
Sbjct:   15 SAFFVVVNGQVESGEFPD-DDLYVRYGFSFGPDWTVVDGIETGLSQIARKAPGVDQSVVWNFPVDISFKSTNAHGWPRMSISVYGVDGLGRDVVRGYGSVLIPPFPGGYDRYIHTYVPVPSSLWQRFVSWFTGTYAEFYDSKFVAQGENREVTRVESTGVVKVKFDVLTRGMETLGYQPAHR 195
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A836CI87_9STRA (B9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI87_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.400e-68
Identity = 104/161 (64.60%), Postives = 125/161 (77.64%), Query Frame = 2 
Query:  251 QVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTR 733
            QVE+GEF   DNLY RY LSFG+DW ++HGL+TGLSQ+A+R+G    AV WNFPIDV  K+T AFGWPR+ALSV+ VD +GRD VVGY SVLVP   G H +  + YAP+ SS+LQR R W++GAYPEFFD K V R EGREVTRV+  G+V+VSL VMTR
Sbjct:    9 QVEYGEFSGYDNLYVRYALSFGHDWTVLHGLETGLSQMARRSGSGGEAV-WNFPIDVALKSTCAFGWPRLALSVYAVDALGRDAVVGYASVLVPPTPGPHAQWVYTYAPKASSILQRVRGWIAGAYPEFFDPKLVARSEGREVTRVQRRGRVRVSLTVMTR 168
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A7S2BJK9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJK9_9STRA)

HSP 1 Score: 221 bits (564), Expect = 3.290e-68
Identity = 106/186 (56.99%), Postives = 137/186 (73.66%), Query Frame = 2 
Query:  221 ASSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLD---TGLSQIAQR--AGGQDT---AVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGY 754
            +SSF++M TGQVE G+FG  DNLYC+Y+ S+G+DW +V GLD    GLSQIA++  AG  +T   +VVWNFPIDV FK+TNAFGWPRI+ +V+ +D +GRD   GYGS+LVPTQ G +++   MYAP PSS  QR    ++G YPEFFD+KFV++G  REVTRV  +G VKV + V T+ M  FGY
Sbjct:   27 SSSFYLMITGQVESGDFGGADNLYCKYSFSYGHDWTVVTGLDGVTAGLSQIAKKGSAGMDNTFGGSVVWNFPIDVAFKSTNAFGWPRISFTVYGIDALGRDKTYGYGSMLVPTQPGHYQKEIEMYAPMPSSWYQRILNGITGTYPEFFDTKFVSQGSNREVTRVESTGSVKVQVQVATKDMQKFGY 212
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A7S1CLA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLA7_9STRA)

HSP 1 Score: 219 bits (559), Expect = 7.890e-68
Identity = 101/187 (54.01%), Postives = 132/187 (70.59%), Query Frame = 2 
Query:  194 GGGTQAPSGASSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGY 754
            G  T    G S FFVM TGQ+  GEF   + LYC++ ++ G DW +V G   GLSQ+A++A G D  VVWN+PIDV+FK TNAFGWPR+ LSVF VD +GRD + GYG++ VPT  GR+ R    + P  SS+ Q F AW++G  PEFF+ KFV++GEGREVTRVR +G V+V ++V+TRGM+  GY
Sbjct:    6 GDDTGVSDGPSGFFVMATGQIRRGEFSDGEKLYCKFDVACGPDWKVVQGHAQGLSQVAKKAAGGDDGVVWNYPIDVSFKATNAFGWPRLVLSVFEVDALGRDVIRGYGALHVPTVPGRYTRFVRTFTPASSSLFQEFTAWLTGNRPEFFNPKFVSQGEGREVTRVRSTGVVQVDINVLTRGMSEHGY 192
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A8J2WZC0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZC0_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.760e-65
Identity = 98/178 (55.06%), Postives = 130/178 (73.03%), Query Frame = 2 
Query:  224 SSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGYN 757
            S+FFV+  GQ+E GEF   D+LY RY  SFG DW +V G++ GLSQIA++A G D +VVWNFP+D++FK+TNA GWPR+++S++ VD +GRD V GYGSVL+P   G +ER  H Y P PSS+ QR  +W++G Y EF+DSK V + + REVTRV  +G VKV   V+TRGM   GY+
Sbjct:   55 SAFFVVVNGQLESGEF-PYDDLYVRYGFSFGPDWTVVDGIENGLSQIARKAAGCDNSVVWNFPVDISFKSTNAHGWPRMSVSIYGVDSLGRDVVRGYGSVLLPPFAGDYERYIHTYIPVPSSLWQRLVSWLTGTYAEFYDSKLVAQSDNREVTRVESTGVVKVKFSVLTRGMAALGYS 231
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BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Match: A0A8K1CUS8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUS8_PYTOL)

HSP 1 Score: 206 bits (525), Expect = 2.000e-62
Identity = 89/178 (50.00%), Postives = 135/178 (75.84%), Query Frame = 2 
Query:  221 ASSFFVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVPTQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRGSGKVKVSLDVMTRGMTNFGY 754
            +++F ++ +GQ+E   +  + NLYCRY++++G DW ++HG D GL+Q+A R    D A+V+NFPID++FK+TN FGWPRI  SV+ +D +GRD V GYGS+ +PT+GG+  R   ++ P  SS+LQ+F AW++GA PE+FD+KF+T+ +GREVTRV  +G++KV+L+V+T GM   GY
Sbjct:   59 STAFQLIVSGQIESINYPGVGNLYCRYSVTYGTDWRVLHGADAGLTQLAYRGSHHD-AIVFNFPIDISFKSTNPFGWPRIVFSVYGLDALGRDVVRGYGSMYIPTRGGKFTRQVPLFRPLSSSLLQQFTAWLTGAPPEYFDAKFITQNDGREVTRVTSAGRIKVTLNVVTSGMKEHGY 235
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLY8_ECTSI1.340e-15179.86Endothelial protein B9 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KBF1_9PHAE4.390e-9768.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U2U9_9STRA4.100e-7851.53Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U318_9STRA4.770e-7859.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0YE40_AURAN7.340e-7158.24Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CI87_9STRA1.400e-6864.60B9 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2BJK9_9STRA3.290e-6856.99Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1CLA7_9STRA7.890e-6854.01Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2WZC0_9STRA1.760e-6555.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CUS8_PYTOL2.000e-6250.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:87767..94744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLY8
Preferred nameB9D1
PFAMsB9-C2
Model size904
Max annot lvl2759|Eukaryota
KEGG koko:K16744
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001701,GO:0001944,GO:0002065,GO:0003674,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007423,GO:0007568,GO:0007610,GO:0008104,GO:0008150,GO:0008158,GO:0008340,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010259,GO:0015630,GO:0016020,GO:0016043,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030326,GO:0030537,GO:0030855,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035177,GO:0035869,GO:0036038,GO:0036064,GO:0038023,GO:0042733,GO:0042995,GO:0043009,GO:0043010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060089,GO:0060173,GO:0060271,GO:0060429,GO:0060563,GO:0060756,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072358,GO:0072359,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515
Exons8
Evalue5.34e-153
EggNOG OGsKOG4027@1|root,KOG4027@2759|Eukaryota
Ec32 ortholog descriptionB9 domain
Ec32 orthologEc-22_000220.1
Descriptionhedgehog receptor activity
Cds size822
COG categoryS
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.16.1prot_P-littoralis_Contig13.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 87767..94662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789581.0127728-CDS-P-littoralis_Contig13:87766..879361680789581.0127728-CDS-P-littoralis_Contig13:87766..87936Pylaiella littoralis U1_48CDSP-littoralis_Contig13 87767..87936 -
1680789581.0246885-CDS-P-littoralis_Contig13:88538..886381680789581.0246885-CDS-P-littoralis_Contig13:88538..88638Pylaiella littoralis U1_48CDSP-littoralis_Contig13 88539..88638 -
1680789581.0328083-CDS-P-littoralis_Contig13:90381..905461680789581.0328083-CDS-P-littoralis_Contig13:90381..90546Pylaiella littoralis U1_48CDSP-littoralis_Contig13 90382..90546 -
1680789581.0412867-CDS-P-littoralis_Contig13:91365..914971680789581.0412867-CDS-P-littoralis_Contig13:91365..91497Pylaiella littoralis U1_48CDSP-littoralis_Contig13 91366..91497 -
1680789581.0503204-CDS-P-littoralis_Contig13:92068..921371680789581.0503204-CDS-P-littoralis_Contig13:92068..92137Pylaiella littoralis U1_48CDSP-littoralis_Contig13 92069..92137 -
1680789581.0599492-CDS-P-littoralis_Contig13:92786..928641680789581.0599492-CDS-P-littoralis_Contig13:92786..92864Pylaiella littoralis U1_48CDSP-littoralis_Contig13 92787..92864 -
1680789581.0706513-CDS-P-littoralis_Contig13:93306..933881680789581.0706513-CDS-P-littoralis_Contig13:93306..93388Pylaiella littoralis U1_48CDSP-littoralis_Contig13 93307..93388 -
1680789581.0791528-CDS-P-littoralis_Contig13:94636..946621680789581.0791528-CDS-P-littoralis_Contig13:94636..94662Pylaiella littoralis U1_48CDSP-littoralis_Contig13 94637..94662 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789581.0875623-UTR-P-littoralis_Contig13:94662..947441680789581.0875623-UTR-P-littoralis_Contig13:94662..94744Pylaiella littoralis U1_48UTRP-littoralis_Contig13 94663..94744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.16.1

>prot_P-littoralis_Contig13.16.1 ID=prot_P-littoralis_Contig13.16.1|Name=mRNA_P-littoralis_Contig13.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
MTTLAALTRTITREKTSFGKTVDPFNKTSSGHLPPAAGGGTQAPSGASSF
FVMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGG
QDTAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLVP
TQGGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVT
RVRGSGKVKVSLDVMTRGMTNFGYNRPERAQGDDQGPQFGPHSTGAMGAT
NSHHGASSSIFGNTTGSKPSLVG*
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mRNA from alignment at P-littoralis_Contig13:87767..94744-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.16.1 ID=mRNA_P-littoralis_Contig13.16.1|Name=mRNA_P-littoralis_Contig13.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6978bp|location=Sequence derived from alignment at P-littoralis_Contig13:87767..94744- (Pylaiella littoralis U1_48)
TTTGGTCTTGTGAGTTCAAATGTAACAAGCCGGGAGATCGAGGAGCCGCC
CGCTGCTGCTGGAGCATATACCGTGGTGCACGATGACAACCCTGGCTGCG
CTTACAAGGTATATCATGTCGTGTAGATCCACGTAGGTCCACCCGTATGA
TTTCCCTGTGGGTCGGATAGACTCCTGCTATATGGAGCTGGTTTGGAGTG
GAAAGATAGCAACAAGAAGAACCACCGTTGATGATGTCCCATATCCAATC
CACTTGCAAGAAAACGTTGCGACCACCTGCCCCAGGCAAATCCTCTGCAG
GACAGTTGCAGCCAAGGAGTGTTAGATTTCCCAGCTGAGGAGCCGTTGCT
GTTTTGTTGTTACCGGGGCGATCTCACACGCATCGCCCTGGTAGTATTTC
GCACATGACACCACGCCCCCTTGGCCGATTTTCAAAGCTCGATTATCCCA
CAAAGCTCGATTATCCCACAGCAGCAGCAGAGGAAGAAGTCTCGGTGCTG
TGGTATCGCACAAGGTGAACGATCGAGGTTGGAATCAACCATTTCGTCCA
GAGCTTTCCGACGATGTATGTTAGGCAGAAACGAGTTTATGTTTGCGCCA
TCTCTCGGTTTAGTGATGGAGCTTCGAGAATCGACCGGGTTTTCCGAAAA
CTACAACACAACACGGAGATTCAAGTAAATGACCCATCCATGGGGAATAT
TTCGTGTGACCCGGACCGCGCCAACATAAACTGAATAAGTCAGTTTAATG
AAGCGGGATGCCCCAGTACGAGACACAATGGCATGTCTGTACAGTTTTGT
TTTTCGTTTTGCAAGAAAGGTGTTTCCAACCACTTCGCTTTCCCGTTTTT
TCGTTTTTTTGTTTTTTCGAGGCGACAAACGAGAAAAAGCCTATTGGGAA
GCCTCCGAAACGAAAATTACGCCTCTCTTACATTTTGCTACTCCGACGAA
TCAGAGCCCAAATTTGTTTTCGCTTCCCCAATTCCTTTTGTTTCGTTCCA
CCGTTTATGCGGGCTCTCCTCAGAGAGAGGGCAACGCTTCATACAGGAGT
TGCGCTCATATCCTAGAGATATGAGCCTCTATCGTATGGTCCCCTCTGTT
TGCATGTGTCGGCTCCGTAGTTATTTTCCCTCAGAGACAACAACCGTGCC
GCCGCAGGCAAGGATTTCGATTTTTCAAGCCCGGGGAGACCACCATCAAA
CACGTACTTGTACCTACCATTGACTGACGGTTTAAATCACTTTTACTAAA
ACAAAGTACTAGAAAGAGGTGACGCATTAATGAGCTGCTGCTGTTGTTGT
TGTTGTGCGCCGAAAATGAAAATCTCACACATATGACTCCCCGTGGAGGA
GCACAGGACCATCACCCGAGAAAAGACGTCTTTCGGTAAAACGGTCGATC
CTTTCAACAAGACTTCATCGGGTCACTTGCCGCCGGCGGTGAGTTGGCCA
GAGAGGTTTCCACGTGTACACTTCGTGACTTCAAGCACACGTTTGATAGC
GTAGATATGTCGATAACATACAAAAACCTCTGGAAAAAGCATGCCGAGCA
CCTGTACAAGGGAAAGGAAGGTGTGTGGGTCGGCCGCGCATGTATTACCC
AGAGGGGTTCTTGAGCACTCCCTTCTTGAACAACACAGCAGTGACGCACA
CGCCCCCATCCATCTCAACCTGGGCTCAAAGTGTAACCCGGGAGTCCTGC
CTTGTTAACAACGGCATGTCGAAGACCCGGCAAACGGAGTTTTGTAATAT
ACTCCGTATGACAATTGTCGACGAATCTTGTATAAACGGCGCATAATTTT
TGCGTCGTGCATACTGGTATCTATTCGGCCGTCAGACGGAAGCCAACAAA
ACCGACGACGAATTTGTTTGCTGTCTGCAGGCTGGAGGGGGAACGCAAGC
GCCTTCAGGGGCATCAAGTTTTTTCGTCATGTGCACCGGTCAAGTCGAAT
TCGGCGAGGTACGAACTACTAGGGTGATCTTTGCGCTACCTACTCAGGAA
TACGAGTAAATACATACAGCGTTGTTTTTTTTTCTTGCCTCGACCTCTGC
TCACTTATTCGTACTTTCCTCGGTAGATCATCCTGCTAATTTGAGGTTGA
AAGTCACACATCCTTGTTGTGACGGCAATGCCAATTCGCGAGGTTTACCG
AGGACATGAAATGAAGCCTTCTGAAGCTCCCTCGAGTAGGTTTGTCAGCG
CAATCTGGTCTGCAAAACTTTGGAGGGTTCGAGGAAGAGCAAGCGAGCTC
GACCGCTCTTAACGGTTCTTGACGATGGAACCATGGCATATCTCGGATTC
CGACACATTTTTCAGCTTTCTTATATTAGACTATAAAACTCGATGAAACT
GGTACACCGAGTTAGCCCAATTTGCGCAGTGCTGTACGAAAAATGAGGCG
TTTGGGATAACTTCTCGTTAACCGAACCAACCCGGAAACATTTCGTCACA
TTCCAATGAGCTTTGCGAGGGTCTTACCATGCCTCCTCTGTGAAAAAGCA
ACTTTACACTCCTGCGGTAGACGCTAGCGTACGTTCATGCACGCTACCTT
CCAGCCGACAGCAACCAAACCCCGTGGCGTTGCGCTGTACTTGCCCCCCG
TCTGCAGTTCGGAAGCTTGGACAACCTCTACTGTCGGTATACCCTCAGTT
TTGGAAACGACTGGTACATCGTACACGTGAGTGAATTATAGTAGTAGTAC
CGTCGAAAAATACAGCCCTTTATTCGTGCTGTACGCAGAATCAGATCGAA
CCGACGTTATCATGTCTTTTCTTTTATCATACGAAATGGTAGACGATCGG
TTTTCGAGGATCTGCAGCGTGCAATAAAGATCGTCACCGGAGTTTACAGT
ATATCATAGAAAGGAGGGCGCCGAAAAGGCACGATGGGGTCATCCAGCCG
GCATTGAGTGCGTACCCATCTCTGTACTTGAGCAGCGTCTCGGATGTGCG
GAATTTGCGAGGAACCGAAGCACCTCAACAAGCATTTTAATCCTTAGGGC
TCCGAAAGAAGGCAAGACCGACCAGAAATAGCATCGCCAAGCAAGACCGC
TAAAAATACGTTAATGGTCTAGATCCAGCTTAGCTGATGTTGATAAAGCT
TCGACACAAATACGTCTCTAGTTTCGAGAGTTTTTCGCATCGTGTGCAGT
TTGTAGGCCTACCTCATCTGAAGGCCTGTTGTCAACCCCAACGTTGCTCA
CTACGCGCCTGGTCCACTGCAACTTGCGGTCTCGTCATTGCTTGCAGGGC
CTCGACACGGGGCTGTCGCAGATTGCGCAGCGGGCAGGAGGTCAGGATAC
GGCCGTCGTCTGGAACTTTCCGATCGACGTAACCTTCAAGACGACCAATG
CATTCGGGTGGCCTCGCATTGCTCTCAGCGTGAGCGTAGATTTCTTTAGG
GCCTTGTGATAGCGGCGAATACACAAAACGGCCTTCGACCGAGTGTTTTA
TTTCCCCACGCAACCTATGTTCCGGATTCTACGCCTCAATTACTTGGTGC
ACAGAGGGATGCGGGGGAATGTTCGTTCTACCTCTGGTACTTGTACATGT
GTTCGTGCATCTGATTTTTGGCGGCAAGGCCACGTCGGCTCTGAATACGT
TATCCTCGCCGATCGACATCCCTATCGTAGCTTCTTCTCTTTATATAGTT
ACGATATAGCAACAGTCACTCATCCACGTCGGCTTCTTGTTTCGAATCGA
CACTGCCAAGGTCATGTTCAAGTTCGGCTCTACAGTTCTTTTTGCCGACA
TTTCCTGGAGCCCCACCTGAAAGCGAGTCCTGAAAACAAGCTTTCACGTC
TTTCTACTGTTTCAATCACGCCGATGGCAAAATGGTGGCATCGAAAAACC
CACCAACTCTTCCTTAATTAAGTAGATCATCGGGACAACAAACGTAGCAC
ACTATTCAAGGAATCGGTTTTCGCAGTGCTGGTGTTGGCGATGAACAAAG
CTAAGCATGAAACACAGCGCTGTTACCTTCGTTTTTACATTTCCTTCGCC
GCCATAGAAACAAGATTTGAGAGGATACGGCAGAGTAGCTTTCGAAGCAA
GCCGACGCCAGTTGATTCCAAAATAGTCAAGACCAACGTTGTTATTGATT
CTGCAAGGCATTCTGTATCACTCCCGTTGAAGAAGAACCTTTCCCCGTCC
TGATACTCGTGCAAAAATCCACCCCCGCGTCCCACGCCCTAAACACAGGT
TTTTCGAGTGGACGACATGGGTCGAGACACCGTTGTCGGCTATGGATCCG
TGTTGGTCCCTACGCAGGGAGGGCGGCACGAGAGGGTGGCACACATGTAT
GCCCCTCAGCCCTCATCGATGCTACAAAGGTTCAGGGCTTGGGTGTCAGG
CGCTTATCCGGAGGTGAAAATAAAATCTCATATTTGCGTGTACGCTGTGG
GGGTGACTGTTCACGCCCTTACACTCGCCTTACGCGTCGAAGCATATTGA
AAATGGTTGCAACCCCAACCCTGTACAGGGTGGCCCCAAACTCGCCCACC
ACAAGACGCGTGCGTTTCGCTGCAGGCTGGCTTGCCCACCAGAGTGTGTG
TTGCTGCAGGGGGAAACGGTTGCAACCCCAACCCTCTACAGGGCGGCCCC
AAACTCGCCCACCACAAGACGCGTGCGTTTCGCTGCAGGCTGGCTTGCCC
ACCAGAGTGTGTGTTGCTGCAGGGGGAACCCTAAACGGCTCGACGACGGA
GCTTTCGAAAGATGCTGAGTATCACTGCGACCGTTTTTGATAGAAGCCAG
ATATTGACCTTGGTTTTCTCGTACTCCTCCCTCACATTCAGCCAACCGCA
TGTGTAGTAAAACTTTGTGTTCGCACGTGCATATGGTGCATAGGGCTCCT
GATCTCAATGGCGTGGGACATGGGGGAGTGGCCCATCTCATAGCACTCTG
GTGACCCCGTTACCAGTTACGCAAGATATACCGAAGTGGCGCGTTCGTCA
AGAATTCTGATCAACCCTTGGTGGTTTGCCTTGCCACCCTGGCCGCTGGC
TGGTGGTTGTCCCTCTTGCGTACGAAAAATAACATGGGGCCACAGTCTGG
AACCAGGAGATGCCAACAGAGGATTTTGATGGAAACAGAGCAAAACAGAC
AACCTTTGAACAGGCACCCGCGGACACCACTTCCATTCGCTGCTTGCCGT
CGGCAGGACTTGGAGTCGGTGGGGTCATTCAATGAACAGGGAATAGAAGC
GCCACGTATCCAAGATCGATTCAAGAAATTATGTCCAAGGCAGTAGGATA
TCGTCTATTTTTAAGAGTAAAACAAACAGCCGGATTACGTTTTTGATTGG
AAGCACACACCGTCGGCAGACGCTGCTCCCTATTGACTGAATGATCCCAC
CGCCAACCCAACCCCCGAAAGACGGTAAGCAGTGAATCGAGATCCCATCC
TTCCAGAGTTTAGCATGATGGCTGCTCGAGCAAGCGAGAAATTTATTGTG
ATGTTCTCGCATGTCGGCTGAATTTGCTCTCTTCGCGTCGAAATACGCTT
TTGGCACCTCCTGCTTCACGCCCGTGCCCCAATTTTTTTTTCTCACTCCT
GAAGGGCAACCACCACCCGCCAGTAGCCAGGTTTGCAAGGTCGTGCACCA
AAGATTGCTCAGAGCCCTTGACTGGCGCGCCACATTACCTTGCGTAAGCG
GTGGTAATCGGTATTTGCACCGTCTGGCCCCTACTTCAAACCAAGATTTG
GAGACAAGATTCGGCGAGGGCATTCTTCGGGATCTTGACCCCTAGGTTCC
CATAATACTCCCCTTTCAAGCCCGACCACAGTCTTGCCAATGTTTCCGGG
CAGAATCTGGTTCTTCATGTATGCGGTGTACATGACGTGTTATTTTCTTG
CACCCTCCTCCCCGAAAAGACACTAAAAAAGAAGTAACGAGTAAGGTGAA
GTTGTGGTTTTCCTGAACAATCATGGGTCTGATACGACAAAGAGGGCGGA
AACGGTCGCAAGCACGCCTAAATGAGGTTTGAACAGTGCAGTGTACAAAG
AGGCATTCATCGCAAAACATTTCTGGTGCTGTAATGATATTGGGAATTCG
CGCTGAAATTTCTTGCCACCACTTTCCTTGCGCTGCCGTGACGAAATAAT
GAGCAGTTTTTCGACTCCAAGTTTGTGACGCGTGGGGAGGGTCGAGAAGT
GACGAGAGTGAGAGGATCGGGAAAGGTCAAGGTTTCGCTGGATGTCATGA
CGAGAGGTAACGTATACAGGAATATCCAAGCTGAATACGCACATATTCTT
CATCGGTTGTAGGCGTAGCTTTCCAAAACATGTATTTTCTGGCGCTGGCA
ATCAAGCAAGTCGAGTGCACTGGAAGGATTTTATCGAATAACGCGCCATA
CGATAGTGTGCGAAAAGGAGCACATTTTCACGGCAGACTGGTGGTGAACC
TCTAGATAAGGCACGCAGCGAGGAGACGACTTGGCTGGGACATGCGTGAT
GTCATAAAACCCACACTTCTACACTTCGAGCCGTGCAAAATACGATCTAG
CTATGAAGTCATGGAAGGGAAATAGGCCCCGTTTTAAGTTTTACTGCCCC
CAGTGCACTTTTGTGCAAGGTGCATGGGGTCGGGTATTCGGCACGCCGAT
GTGTCAACATGACCAGAAAGGCAACTTACAGCAATATAGCCCAGAAAATA
GTTGTACAGCTTGGACCGGGGGGACGAGCTTTTCCGGCGGTGCATTGTTT
TTGGAGGGTACTGGCAAAGGGGAACGCTGCAATGGCACTGCAAGAGATTT
CGTAGACATCTGAACCGGACATGCTCACGGTGCGGGTCGGTTCCCGTCGC
ACACACAGGCATGACCAACTTCGGCTACAACAGACCAGAGCGCGCGCAGG
GAGATGACCAAGGCCCGCAGTTCGGGCCCCATTCGACCGGCGCGATGGGC
GCCACCAATTCACATCACGGAGCTTCCTCCTCGATTTTTGGCAACACGAC
CGGAAGCAAACCGAGTTTAGTTGGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:87767..94744-

>mRNA_P-littoralis_Contig13.16.1 ID=mRNA_P-littoralis_Contig13.16.1|Name=mRNA_P-littoralis_Contig13.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig13:87767..94744- (Pylaiella littoralis U1_48)
ATGACAACCCTGGCTGCGCTTACAAGGACCATCACCCGAGAAAAGACGTC
TTTCGGTAAAACGGTCGATCCTTTCAACAAGACTTCATCGGGTCACTTGC
CGCCGGCGGCTGGAGGGGGAACGCAAGCGCCTTCAGGGGCATCAAGTTTT
TTCGTCATGTGCACCGGTCAAGTCGAATTCGGCGAGTTCGGAAGCTTGGA
CAACCTCTACTGTCGGTATACCCTCAGTTTTGGAAACGACTGGTACATCG
TACACGGCCTCGACACGGGGCTGTCGCAGATTGCGCAGCGGGCAGGAGGT
CAGGATACGGCCGTCGTCTGGAACTTTCCGATCGACGTAACCTTCAAGAC
GACCAATGCATTCGGGTGGCCTCGCATTGCTCTCAGCGTTTTTCGAGTGG
ACGACATGGGTCGAGACACCGTTGTCGGCTATGGATCCGTGTTGGTCCCT
ACGCAGGGAGGGCGGCACGAGAGGGTGGCACACATGTATGCCCCTCAGCC
CTCATCGATGCTACAAAGGTTCAGGGCTTGGGTGTCAGGCGCTTATCCGG
AGTTTTTCGACTCCAAGTTTGTGACGCGTGGGGAGGGTCGAGAAGTGACG
AGAGTGAGAGGATCGGGAAAGGTCAAGGTTTCGCTGGATGTCATGACGAG
AGGCATGACCAACTTCGGCTACAACAGACCAGAGCGCGCGCAGGGAGATG
ACCAAGGCCCGCAGTTCGGGCCCCATTCGACCGGCGCGATGGGCGCCACC
AATTCACATCACGGAGCTTCCTCCTCGATTTTTGGCAACACGACCGGAAG
CAAACCGAGTTTAGTTGGATGA
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