mRNA_P-littoralis_Contig13.132.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 311 bits (797), Expect = 2.480e-103 Identity = 160/274 (58.39%), Postives = 203/274 (74.09%), Query Frame = 1
Query: 1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLVCTAPPAK 822
M LR+RKL ++AN SCFDLST+LE V ++ P LIY+GIWY+DG V +Y+Q MS + L + +E H+ I IS+Y G + + K I + +DTT VF++PLGKESL+HI+ ++VADLL+PLPG+DVFYKFGLKLYSL QN +FRARKG K R+CCSRKGWITVP++EA D+I QILV+KT+EAV MF I + D+F+ H++SIL +KDS VPEQRKLYERRRNKVLNNIAVSV + L R+ WS KKRKLV A P +
Sbjct: 1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALE-GHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 313 bits (802), Expect = 1.070e-102 Identity = 164/274 (59.85%), Postives = 203/274 (74.09%), Query Frame = 1
Query: 1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLVCTAPPAK 822
MALR+RKL ++AN SCFDLST+LE V ++ P LIY+GIWY+DG V +Y+Q MS L + +E H+ IV IS+Y + + K + V ADTT VF++PLGKESLQHITS++VADLL+PLPG+DVFYKFGLKLYSL QN +FRARKG K R+CCSRKGWITVP++EA D+I QILV+KT+EAV MF I + D+F+ +++SIL KDS VPEQRKLYERRRNKVLNNIAVSV + L R+ WS KKRKLV A P +
Sbjct: 99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALE-GHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 278 bits (710), Expect = 1.940e-90 Identity = 152/272 (55.88%), Postives = 185/272 (68.01%), Query Frame = 1
Query: 1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLVCTAPP 816
MALR+RKL V+AN SCFDL T+LE V ++ P LIY+GIWY+DG V +Y Q MS + L + +E H+ DIS++ + + K I V A+TT VF+HPLGKESLQH TSDF+ADLL+PLPG+DVF KFGLKLYSL QN +FR RKG K R+CCSRKGWITVP+EEA D+I QILV+KT+EAV + IL +KDS PEQRKLYERRR +LNNIAVSV + + R+ WS KKRKLV APP
Sbjct: 1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALE-GHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 214 bits (544), Expect = 5.690e-62 Identity = 126/269 (46.84%), Postives = 169/269 (62.83%), Query Frame = 1
Query: 1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGE--QVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKK----SIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKK 789
MA RHRKL V+A PSC DL LLEPV++ P L+ + I + DG+V Y+QN +S L Q+ + H+D+ IS YS G + K+ S ADT + ++PLG+ESLQHIT ++V DLLK + VF+KFGLKLYSL QN +FR RK Y VR+ K WITV K+EA D+I +LV+KT EAV M+ +S +++F +L+ +DS VPE++KLYE+RRNK L+ IAVSVN RLS+L W GK+
Sbjct: 1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSI-----IEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKR 263
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 205 bits (521), Expect = 2.730e-56 Identity = 121/263 (46.01%), Postives = 164/263 (62.36%), Query Frame = 1
Query: 19 KLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGE--QVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKK----SIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKK 789
KL V+A PSC DL LLEPV++ P L+ + I + DG+V Y+QN +S L Q+ + H+D+ IS YS G + K+ S ADT + ++PLG+ESLQHIT ++V DLLK + VF+KFGLKLYSL QN +FR RK Y VR+ K WITV K+EA D+I +LV+KT EAV M+ +S +++F +L+ +DSPVPE++KLYE+ RNK L+ IAVSVN RLS+L W GK+
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSI-----IEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 185 bits (469), Expect = 6.160e-55 Identity = 117/256 (45.70%), Postives = 145/256 (56.64%), Query Frame = 1
Query: 1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRL 768
+A+ HRKLRV+A+PSCFDLST+LEPV + +PNLIY+GIW+ DG V +Y+Q+ MS + L + K H+ I +I+ YS I S + D +F+ADLL L G+DVFYKFG+KLY LEQN +FRARKG K+V SGV+ HID+FEK AESILD KDS VPEQRKLYER RNKVLNNIAV+V + LSRL
Sbjct: 6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSAL-KDHMVITNIAPYS--------------IPLLGSCNRSGDPR----------------LEFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.030e-10 Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 1
Query: 316 TGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRA--RKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFE---KHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLV 801
T V ++P+GKESL HIT + + +LL G DV ++FG KLY+LE+N +F+ + G+ RL W+T K + + L +EAV+ + I ++ FE + I D ++ +P RK N + +N+A E+L R+ +GKK KL
Sbjct: 128 TLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQED-MPVYRKFIRDGFNVLASNMA----EKLRRIERDTGKKLKLT 288 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig13.132.1 >prot_P-littoralis_Contig13.132.1 ID=prot_P-littoralis_Contig13.132.1|Name=mRNA_P-littoralis_Contig13.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQback to top mRNA from alignment at P-littoralis_Contig13:643789..644619- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig13.132.1 ID=mRNA_P-littoralis_Contig13.132.1|Name=mRNA_P-littoralis_Contig13.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig13:643789..644619- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig13:643789..644619- >mRNA_P-littoralis_Contig13.132.1 ID=mRNA_P-littoralis_Contig13.132.1|Name=mRNA_P-littoralis_Contig13.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig13:643789..644619- (Pylaiella littoralis U1_48)back to top |