mRNA_P-littoralis_Contig1296.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1296.7.1
Unique NamemRNA_P-littoralis_Contig1296.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1296.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1296contigP-littoralis_Contig1296:25013..27131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LB94
Model size1173
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000253
EggNOG OGs28M73@1|root,2QTQ3@2759|Eukaryota
Descriptionaxon ensheathment
Cds size1170
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.3858926-CDS-P-littoralis_Contig1296:25014..250621680789579.3858926-CDS-P-littoralis_Contig1296:25014..25062Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 25015..25062 -
1680789579.3953571-CDS-P-littoralis_Contig1296:25601..260511680789579.3953571-CDS-P-littoralis_Contig1296:25601..26051Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 25602..26051 -
1680789579.4040284-CDS-P-littoralis_Contig1296:26459..271311680789579.4040284-CDS-P-littoralis_Contig1296:26459..27131Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 26460..27131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1296.7.1prot_P-littoralis_Contig1296.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1296 25015..27131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1296.7.1

>prot_P-littoralis_Contig1296.7.1 ID=prot_P-littoralis_Contig1296.7.1|Name=mRNA_P-littoralis_Contig1296.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=390bp
SATPNAAAEGVEDVGTGTGGGLAGGDSNAAAGPSSSSGEASLRRRLSAGA
LAALGSIGTGIGISSDNPPGEVDDASVPATGNLSSDVEVETNDVTAKSSV
GTGISGYLPSGDKSVAAPAVSVGAGEASLRPRLAADRLAAWDAVGAGTGL
SGNTQSGEPGDVSTLPAGELAAGLGAKLERAKVPVKEVTVEAARAGTVVK
EPSPAWLNLGRGGGAEEQVEQEIEPQVAAFCEAPAVTAAATSAAGTAAAG
TEPEHSVLASTVAGSETVASDKAAPVGSVSNAGETSATQRSPVDPGLTPK
AGKVRAHAAALERANSTGVAPVASLEATATAAAAAADMKPRGGPEAKSPY
VGGVDAIEASVVAAMENSIKPEATAFASRGEDVPTTAAAA
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mRNA from alignment at P-littoralis_Contig1296:25013..27131-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1296.7.1 ID=mRNA_P-littoralis_Contig1296.7.1|Name=mRNA_P-littoralis_Contig1296.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2119bp|location=Sequence derived from alignment at P-littoralis_Contig1296:25013..27131- (Pylaiella littoralis U1_48)
TCGGCCACACCCAATGCTGCTGCGGAAGGCGTCGAAGATGTGGGTACAGG
AACGGGGGGGGGCTTGGCCGGTGGCGACAGCAACGCCGCCGCTGGCCCTT
CATCAAGCAGCGGAGAGGCTTCTCTCAGGCGGAGGCTCTCCGCGGGTGCG
CTGGCAGCGTTGGGCTCTATCGGCACTGGCATTGGCATTTCGAGTGACAA
TCCACCAGGAGAGGTGGACGATGCATCGGTGCCGGCTACGGGCAACCTGT
CCAGCGACGTGGAAGTCGAGACCAACGACGTGACCGCCAAGTCTAGTGTG
GGAACGGGCATCAGCGGTTACCTACCGTCCGGCGACAAAAGCGTGGCGGC
ACCGGCAGTGAGCGTGGGGGCCGGCGAAGCTTCTCTCAGGCCACGGCTCG
CTGCGGATAGGTTGGCGGCATGGGATGCTGTTGGCGCCGGCACTGGTCTG
TCGGGCAACACCCAATCGGGAGAGCCGGGCGATGTCTCCACTTTGCCTGC
CGGCGAGCTGGCTGCGGGTTTGGGAGCGAAGCTGGAAAGAGCCAAAGTCC
CCGTGAAGGAAGTCACGGTGGAGGCAGCTAGGGCAGGGACGGTAGTGAAA
GAGCCTAGCCCGGCGTGGTTAAACCTAGGGCGCGGCGGGGGTGCAGAGGA
GCAGGTCGAACAGGAGATCGAGGTGAGAGTCACGGTGACCATCGCTTCGC
GGTGGGGGGGGGGCGTGTTCCCTTTTTGCATACTCTCTCAGAGCGGCCCC
AAAAGGCCCTCTACTTGGGGTAGAAACACGAACGATCCAGGCTATTACTC
CGACATGCTTTTATCGACACAGGGCATTTAACAAGCACAAACTCAAGCCG
TGAGAAACAACCATGCACGTTTCCACGCATTCACTCACTCTTCCGCGGTC
TTCTCGTTCGCCTCCTCGGCATTGTTTGCCACAGCCACGTCTCCCTATAC
TGCTGAGCCTTATTTCCCTGCGGAGTAGTCGGGTCCCCTAATCTTTTCAG
TCCCTGCCCCCCCCCTCGCCACCCTTGTGTCGCGGCGATCAACTGTTCGC
AATCGCGTAAACGGTGCAACCTATGAGCAGCCTCAGGTGGCGGCTTTTTG
CGAGGCGCCAGCTGTCACCGCTGCTGCTACTTCTGCTGCGGGGACTGCTG
CTGCGGGGACTGAGCCCGAGCACTCCGTTCTCGCTTCGACGGTGGCCGGC
AGCGAAACAGTTGCCTCGGACAAGGCGGCGCCTGTGGGGTCGGTGTCGAA
TGCGGGCGAGACTAGCGCAACCCAGCGTTCTCCCGTCGACCCGGGGTTGA
CCCCCAAGGCGGGGAAGGTGAGAGCCCATGCTGCTGCTCTGGAGAGGGCA
AACTCGACAGGGGTCGCGCCCGTCGCGTCTTTGGAAGCAACAGCAACAGC
AGCAGCGGCAGCAGCAGATATGAAACCTCGTGGTGGACCGGAAGCCAAGT
CACCGTATGTGGGCGGAGTGGACGCGATAGAAGCGTCCGTGGTGGCGGCG
ATGGAAAACAGCATCAAACCGGAGGCCACGGTGAGATTCACGCGAAGTAG
ACCTGGCCCACCATATTTCGTCGGGGTAGTTTATTGATGCTTGTAGGATT
CACGTTTGTTTGTGGGGTTGCAAAAACCACACTCGGCAGGACCCGCTTGA
CTTTCGGCCTATGGACTGGACAGTTCTGGCATTCCGAATGGTCACAGTAC
CCAGGCACGAGCACAAACGCGGAGCCCCTCGTTGTGCCAGCGCCATCACC
TCGGCTCCACTTTTTTCAGGGTTGCTCGCTGCTGGCTGCCGATAGCCCTC
TCGAAGAAACAAATATTGTCTGTGGTGGTGCTCCCCGCATGCACAACCTT
TTTTTTTTTTTGTGTTTCTCCTTCTTGTGTTTGGCCTTATTTTGTTTCAC
TTTGGTTTACCCTTCTAGCACGATATGTGCGCGGTCTATGGCTACGGGTT
ACGAAGTAGGTTTGAGCGGTTAGCGGTGAGCTGAAATCTCGAATCAGAAC
AACAACAAAAACAACGACGACGTGCCATGACATCCCATATTTTCCCCGCC
CCCTCTCCCATAAATACAGGCATTTGCGTCCCGTGGGGAGGACGTTCCGA
CAACTGCTGCTGCTGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1296:25013..27131-

>mRNA_P-littoralis_Contig1296.7.1 ID=mRNA_P-littoralis_Contig1296.7.1|Name=mRNA_P-littoralis_Contig1296.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1170bp|location=Sequence derived from alignment at P-littoralis_Contig1296:25013..27131- (Pylaiella littoralis U1_48)
TCGGCCACACCCAATGCTGCTGCGGAAGGCGTCGAAGATGTGGGTACAGG
AACGGGGGGGGGCTTGGCCGGTGGCGACAGCAACGCCGCCGCTGGCCCTT
CATCAAGCAGCGGAGAGGCTTCTCTCAGGCGGAGGCTCTCCGCGGGTGCG
CTGGCAGCGTTGGGCTCTATCGGCACTGGCATTGGCATTTCGAGTGACAA
TCCACCAGGAGAGGTGGACGATGCATCGGTGCCGGCTACGGGCAACCTGT
CCAGCGACGTGGAAGTCGAGACCAACGACGTGACCGCCAAGTCTAGTGTG
GGAACGGGCATCAGCGGTTACCTACCGTCCGGCGACAAAAGCGTGGCGGC
ACCGGCAGTGAGCGTGGGGGCCGGCGAAGCTTCTCTCAGGCCACGGCTCG
CTGCGGATAGGTTGGCGGCATGGGATGCTGTTGGCGCCGGCACTGGTCTG
TCGGGCAACACCCAATCGGGAGAGCCGGGCGATGTCTCCACTTTGCCTGC
CGGCGAGCTGGCTGCGGGTTTGGGAGCGAAGCTGGAAAGAGCCAAAGTCC
CCGTGAAGGAAGTCACGGTGGAGGCAGCTAGGGCAGGGACGGTAGTGAAA
GAGCCTAGCCCGGCGTGGTTAAACCTAGGGCGCGGCGGGGGTGCAGAGGA
GCAGGTCGAACAGGAGATCGAGCCTCAGGTGGCGGCTTTTTGCGAGGCGC
CAGCTGTCACCGCTGCTGCTACTTCTGCTGCGGGGACTGCTGCTGCGGGG
ACTGAGCCCGAGCACTCCGTTCTCGCTTCGACGGTGGCCGGCAGCGAAAC
AGTTGCCTCGGACAAGGCGGCGCCTGTGGGGTCGGTGTCGAATGCGGGCG
AGACTAGCGCAACCCAGCGTTCTCCCGTCGACCCGGGGTTGACCCCCAAG
GCGGGGAAGGTGAGAGCCCATGCTGCTGCTCTGGAGAGGGCAAACTCGAC
AGGGGTCGCGCCCGTCGCGTCTTTGGAAGCAACAGCAACAGCAGCAGCGG
CAGCAGCAGATATGAAACCTCGTGGTGGACCGGAAGCCAAGTCACCGTAT
GTGGGCGGAGTGGACGCGATAGAAGCGTCCGTGGTGGCGGCGATGGAAAA
CAGCATCAAACCGGAGGCCACGGCATTTGCGTCCCGTGGGGAGGACGTTC
CGACAACTGCTGCTGCTGCT
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