mRNA_P-littoralis_Contig1296.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1296.10.1
Unique NamemRNA_P-littoralis_Contig1296.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1296.10.1 vs. uniprot
Match: A0A6H5JMZ6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.590e-30
Identity = 101/219 (46.12%), Postives = 121/219 (55.25%), Query Frame = 1 
Query:    4 RRRRSTSTGSAPALQGSGRKRGSSR--PRTISARISEDSPQYYG-DALPGDDDSDTSSVNSLMSIVSTPEISHRQVTRQQTQYRFGESHRAGSVTGSPESSRRPS--HGKITRGMSPSLSSSAAARQPGASVGRNSSSQSLSALAPGLSSLASXXXXXXXXXSLLRWCGVCDAEFTRLRRPHRCRQCLEAVCASCSPARLPVPGTGSLELKRTCKACTG 645
            RRR+  S GS       GR+R SSR  P   +A  SE   +    D+     +SDTSSVNS +S VSTPEIS RQ  R+  Q R  +     SV GSP+ +RR    HG ITR  S                   S+S S+ + AP LS  +               CGVC+AEFTRLRRPHRCR+C+EAVCASCSP RLPVPG+GSLE KRTC+ C G
Sbjct:   64 RRRQQPSPGSGLKTPHDGRRRPSSRFRPHAHAASNSEFRERTTSRDSSVAGGESDTSSVNSRLSTVSTPEISQRQ--RKMLQQRHQQVVGPASVAGSPDRTRRSRVPHGSITRSSS-------------------SASTSVVSSAPSLSQQS---------------CGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 246
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BLAST of mRNA_P-littoralis_Contig1296.10.1 vs. uniprot
Match: A0A6H5JBA2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.480e-27
Identity = 100/227 (44.05%), Postives = 122/227 (53.74%), Query Frame = 1 
Query:   70 SSRPRTISARISEDSPQYYGDALPGDDDSDTSSV---NSLMSIVSTPEISHRQ-VTRQQ------------TQYRFGESHRAGS-VTGSPESSRRPSHGKITRGMSPSLSSSAAARQPGASVGRNSSSQSLSALAPGLSSLASXXXXXXXXXSLLRWCGVCDAEFTRLRRPHRCRQCLEAVCASCSPARLPVPGTGSLELKRTCKACTGN--LVGPQIDAVASPHRR 693
            S R R     +S  S      +L GDD SDT SV   +S +SIVSTPEIS R+  TR+Q               R      A + + GSP SS   S G   R    + S SA   +P  ++ R +SS SLS+                   +LLRWC VC+ EFT+LRRPHRCR+CLE VCA CSPARLPVPG GSLELKRTCK C G+     P++ A A+P RR
Sbjct:   34 SRRRRQQRGSVSRSSYDSDASSLAGDD-SDTCSVASTSSRLSIVSTPEISGRKWQTRKQXXXXXXXXXXXSNSLRSSLGRPAATPLVGSPGSS--VSGGGSRRSSWSTASMSAVGTRPRGTLTRTNSSSSLSS---------------ELSMTLLRWCAVCEGEFTQLRRPHRCRRCLEPVCAPCSPARLPVPGAGSLELKRTCKLCVGDDAAAAPRVGA-ATPSRR 241
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BLAST of mRNA_P-littoralis_Contig1296.10.1 vs. uniprot
Match: D8LGV1_ECTSI (FYVE, RhoGEF and PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV1_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 4.740e-24
Identity = 64/116 (55.17%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:  475 SLLRWCGVCDAEFTRLRRPHRCRQCLEAVCASCSPARLPVPGTGSLELKRTCKACTGN--LVGPQIDAVASPHRRAVAAIPATATXXXXXXXAGILRGAHARASSMTRTSLGVLSE 816
            +LLRWC VC+AEFT+LRRPHRCR+CLE VCA CSPARLPVPG GSLELKRTCK C G+     P + A A+P RR  A   A A        A I +   A   S  R  +G+LS+
Sbjct:  309 TLLRWCAVCEAEFTQLRRPHRCRRCLEPVCAPCSPARLPVPGAGSLELKRTCKLCVGDDAAAAPLVGA-AAPSRRPNAVGAAAAPSPRV---ARITKRRSASMGSAARAPVGILSK 420
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BLAST of mRNA_P-littoralis_Contig1296.10.1 vs. uniprot
Match: D8LNU4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNU4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.250e-22
Identity = 63/127 (49.61%), Postives = 75/127 (59.06%), Query Frame = 1 
Query:  271 SVTGSPESSRRPS--HGKITRGMSPSLSSSAAARQPGASVGRNSSSQSLSALAPGLSSLASXXXXXXXXXSLLRWCGVCDAEFTRLRRPHRCRQCLEAVCASCSPARLPVPGTGSLELKRTCKACTG 645
            SV GSP+ +RR    HG ITR  S                   S+S S+++ AP LS  +               CGVC+AEFTRLRRPHRCR+C+EAVCASCSP RLPVPG+GSLE KRTC+ C G
Sbjct:   14 SVAGSPDRTRRSRVPHGSITRSSS-------------------SASTSVASSAPSLSQQS---------------CGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 106
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BLAST of mRNA_P-littoralis_Contig1296.10.1 vs. uniprot
Match: D7FJP7_ECTSI (Rho guanine nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP7_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-13
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:  490 CGVCDAEFTRLRRPHRCRQCLEAVCASCSPARLPVPGTGSLELKRTCKACTGNLVGPQIDAVASPHRRAVAA 705
            CGVC AEFTR RRPHRCR C +AVCA+CSPARLP         KRTCK C G+   P++  V SP R  ++A
Sbjct:  150 CGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAGDSAIPRVFPVVSPARGRISA 212
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BLAST of mRNA_P-littoralis_Contig1296.10.1 vs. uniprot
Match: A0A6H5KYW1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.990e-13
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  490 CGVCDAEFTRLRRPHRCRQCLEAVCASCSPARLPVPGTGSLELKRTCKACTGNLVGPQIDAVASPHR 690
            CGVC AEFTR RRPHRCR C + VCA+CSPARLP         KRTCK C G+   P++ +V SP R
Sbjct:  173 CGVCRAEFTRYRRPHRCRACSKVVCATCSPARLP---------KRTCKPCAGDSAIPRVFSVVSPAR 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1296.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JMZ6_9PHAE1.590e-3046.12FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBA2_9PHAE3.480e-2744.05FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LGV1_ECTSI4.740e-2455.17FYVE, RhoGEF and PH domain-containing protein n=1 ... [more]
D8LNU4_ECTSI4.250e-2249.61FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FJP7_ECTSI1.080e-1356.94Rho guanine nucleotide exchange factor n=1 Tax=Ect... [more]
A0A6H5KYW1_9PHAE1.990e-1358.21FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1296contigP-littoralis_Contig1296:27750..28586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_11214T0
PFAMsFYVE,Myotub-related
Model size838
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.91e-07
EggNOG OGsKOG1819@1|root,KOG1819@2759|Eukaryota
Descriptionnegative regulation of epidermal growth factor-activated receptor activity
Cds size837
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.4375505-CDS-P-littoralis_Contig1296:27749..285861680789579.4375505-CDS-P-littoralis_Contig1296:27749..28586Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 27750..28586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1296.10.1prot_P-littoralis_Contig1296.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1296 27750..28586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1296.10.1

>prot_P-littoralis_Contig1296.10.1 ID=prot_P-littoralis_Contig1296.10.1|Name=mRNA_P-littoralis_Contig1296.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=279bp
RRRRRSTSTGSAPALQGSGRKRGSSRPRTISARISEDSPQYYGDALPGDD
DSDTSSVNSLMSIVSTPEISHRQVTRQQTQYRFGESHRAGSVTGSPESSR
RPSHGKITRGMSPSLSSSAAARQPGASVGRNSSSQSLSALAPGLSSLASM
PSASSSSSSLLRWCGVCDAEFTRLRRPHRCRQCLEAVCASCSPARLPVPG
TGSLELKRTCKACTGNLVGPQIDAVASPHRRAVAAIPATATPAAAAPAAG
ILRGAHARASSMTRTSLGVLSEVATSVTA
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mRNA from alignment at P-littoralis_Contig1296:27750..28586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1296.10.1 ID=mRNA_P-littoralis_Contig1296.10.1|Name=mRNA_P-littoralis_Contig1296.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig1296:27750..28586- (Pylaiella littoralis U1_48)
AGGCGGCGCAGGCGGTCAACCTCAACAGGCAGCGCGCCGGCGCTCCAGGG
CAGCGGAAGAAAGCGTGGCTCTTCTCGCCCTCGCACCATCTCCGCGAGGA
TCTCCGAGGACAGCCCCCAATATTATGGCGATGCGCTTCCGGGTGACGAC
GACTCCGACACCTCTTCCGTCAACTCCTTGATGTCGATCGTGTCCACGCC
CGAAATCTCTCATCGGCAGGTGACGCGCCAGCAGACGCAGTACAGGTTTG
GGGAGTCCCACCGTGCCGGTTCCGTGACCGGTTCACCTGAGAGCAGCCGG
CGCCCGTCCCACGGAAAAATTACTCGGGGGATGTCGCCGTCGTTGTCGTC
GTCGGCGGCGGCTAGGCAGCCCGGCGCATCTGTCGGTCGGAACTCGTCGT
CACAGTCGCTCTCAGCACTGGCGCCGGGCTTATCGTCGTTGGCATCGATG
CCGTCTGCGTCGTCGTCGTCGTCGTCGTTGTTGCGGTGGTGCGGCGTCTG
CGATGCCGAATTCACGCGGCTGCGCCGCCCTCACCGGTGTCGCCAGTGCC
TCGAGGCTGTCTGCGCCTCCTGCTCGCCCGCGAGGCTACCCGTACCCGGC
ACGGGAAGCCTCGAGCTCAAGCGCACCTGCAAAGCTTGCACCGGGAACTT
GGTGGGCCCACAAATCGACGCCGTTGCTTCCCCGCACCGCCGGGCGGTGG
CTGCGATCCCCGCGACTGCGACGCCAGCTGCCGCGGCACCGGCTGCTGGC
ATTTTGCGCGGCGCCCATGCCAGAGCGAGCAGCATGACCCGAACTTCTTT
GGGAGTTCTCTCGGAGGTCGCCACTTCCGTTACGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1296:27750..28586-

>mRNA_P-littoralis_Contig1296.10.1 ID=mRNA_P-littoralis_Contig1296.10.1|Name=mRNA_P-littoralis_Contig1296.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig1296:27750..28586- (Pylaiella littoralis U1_48)
AGGCGGCGCAGGCGGTCAACCTCAACAGGCAGCGCGCCGGCGCTCCAGGG
CAGCGGAAGAAAGCGTGGCTCTTCTCGCCCTCGCACCATCTCCGCGAGGA
TCTCCGAGGACAGCCCCCAATATTATGGCGATGCGCTTCCGGGTGACGAC
GACTCCGACACCTCTTCCGTCAACTCCTTGATGTCGATCGTGTCCACGCC
CGAAATCTCTCATCGGCAGGTGACGCGCCAGCAGACGCAGTACAGGTTTG
GGGAGTCCCACCGTGCCGGTTCCGTGACCGGTTCACCTGAGAGCAGCCGG
CGCCCGTCCCACGGAAAAATTACTCGGGGGATGTCGCCGTCGTTGTCGTC
GTCGGCGGCGGCTAGGCAGCCCGGCGCATCTGTCGGTCGGAACTCGTCGT
CACAGTCGCTCTCAGCACTGGCGCCGGGCTTATCGTCGTTGGCATCGATG
CCGTCTGCGTCGTCGTCGTCGTCGTCGTTGTTGCGGTGGTGCGGCGTCTG
CGATGCCGAATTCACGCGGCTGCGCCGCCCTCACCGGTGTCGCCAGTGCC
TCGAGGCTGTCTGCGCCTCCTGCTCGCCCGCGAGGCTACCCGTACCCGGC
ACGGGAAGCCTCGAGCTCAAGCGCACCTGCAAAGCTTGCACCGGGAACTT
GGTGGGCCCACAAATCGACGCCGTTGCTTCCCCGCACCGCCGGGCGGTGG
CTGCGATCCCCGCGACTGCGACGCCAGCTGCCGCGGCACCGGCTGCTGGC
ATTTTGCGCGGCGCCCATGCCAGAGCGAGCAGCATGACCCGAACTTCTTT
GGGAGTTCTCTCGGAGGTCGCCACTTCCGTTACGGCC
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