mRNA_P-littoralis_Contig1293.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1293.17.1
Unique NamemRNA_P-littoralis_Contig1293.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1293.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1293contigP-littoralis_Contig1293:34881..35324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size444
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.2039733-CDS-P-littoralis_Contig1293:34880..353241680789578.2039733-CDS-P-littoralis_Contig1293:34880..35324Pylaiella littoralis U1_48CDSP-littoralis_Contig1293 34881..35324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1293.17.1prot_P-littoralis_Contig1293.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1293 34881..35324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1293.17.1

>prot_P-littoralis_Contig1293.17.1 ID=prot_P-littoralis_Contig1293.17.1|Name=mRNA_P-littoralis_Contig1293.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MSVLAIDMAAATAPPSMDAITQLCTETDAQNMSVWMPAKIAMGAGPRSAA
DLDLEDVVASVVQLAGAGDAPDPPKVFTIGMNARGEGGSVATVELRQKRA
LCQSLVEYLWRCSGHGGLKTGSGFLILPSAFPPIPPVSSGVGGGAAGP
back to top

mRNA from alignment at P-littoralis_Contig1293:34881..35324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1293.17.1 ID=mRNA_P-littoralis_Contig1293.17.1|Name=mRNA_P-littoralis_Contig1293.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig1293:34881..35324+ (Pylaiella littoralis U1_48)
ATGAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCAT
GGATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACATGTCGG
TTTGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCG
GATCTCGATCTCGAGGATGTCGTTGCGTCCGTCGTGCAACTTGCTGGAGC
AGGCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCC
GTGGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCG
CTCTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCTCGGGGCACGGCGG
ACTGAAAACTGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGA
TCCCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1293:34881..35324+

>mRNA_P-littoralis_Contig1293.17.1 ID=mRNA_P-littoralis_Contig1293.17.1|Name=mRNA_P-littoralis_Contig1293.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig1293:34881..35324+ (Pylaiella littoralis U1_48)
ATGAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCAT
GGATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACATGTCGG
TTTGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCG
GATCTCGATCTCGAGGATGTCGTTGCGTCCGTCGTGCAACTTGCTGGAGC
AGGCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCC
GTGGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCG
CTCTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCTCGGGGCACGGCGG
ACTGAAAACTGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGA
TCCCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCA
back to top