mRNA_P-littoralis_Contig1291.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1291.4.1
Unique NamemRNA_P-littoralis_Contig1291.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1291.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1291contigP-littoralis_Contig1291:8606..9398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size793
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.15e-16
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size456
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.7894318-UTR-P-littoralis_Contig1291:8605..86911680789577.7894318-UTR-P-littoralis_Contig1291:8605..8691Pylaiella littoralis U1_48UTRP-littoralis_Contig1291 8606..8691 +
1680789577.8088481-UTR-P-littoralis_Contig1291:9147..93981680789577.8088481-UTR-P-littoralis_Contig1291:9147..9398Pylaiella littoralis U1_48UTRP-littoralis_Contig1291 9148..9398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.8001766-CDS-P-littoralis_Contig1291:8691..91471680789577.8001766-CDS-P-littoralis_Contig1291:8691..9147Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 8692..9147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1291.4.1prot_P-littoralis_Contig1291.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1291 8692..9147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1291.4.1

>prot_P-littoralis_Contig1291.4.1 ID=prot_P-littoralis_Contig1291.4.1|Name=mRNA_P-littoralis_Contig1291.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MDGHAALHRAACRRGVAASLVLHNRVEALGYAVAQEVRMFERFSWRVTVV
FDGPPPPSKRGTTVARMEERENARSKAIQASGNSRDSLLVKAAHFSPHVA
RTACVLRSLIRGECVTSPHEADRQLVMMQNYDLSRQPDEEVYIWANDSDV
L*
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mRNA from alignment at P-littoralis_Contig1291:8606..9398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1291.4.1 ID=mRNA_P-littoralis_Contig1291.4.1|Name=mRNA_P-littoralis_Contig1291.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=793bp|location=Sequence derived from alignment at P-littoralis_Contig1291:8606..9398+ (Pylaiella littoralis U1_48)
TGGGAACGCCTGGATTACTGGAGCACCTGAAACACGGTGCATCGGAGGAG
ATCCGTCTGGATGATGGAAAAGGTCGGCGTTTGGTGATGGATGGGCATGC
AGCGTTGCATAGGGCGGCCTGCCGGAGAGGTGTAGCAGCGAGTCTGGTCT
TGCACAACAGAGTTGAGGCACTCGGCTATGCTGTAGCTCAAGAGGTGCGG
ATGTTTGAGAGATTCAGCTGGAGGGTTACAGTCGTATTCGATGGCCCCCC
CCCGCCTTCTAAGAGAGGGACAACGGTGGCCCGAATGGAGGAGAGAGAGA
ATGCACGCAGCAAAGCCATCCAGGCATCGGGAAACAGTAGAGATTCTCTC
TTGGTGAAGGCGGCCCACTTTTCACCTCATGTGGCTAGAACGGCGTGCGT
CCTTCGTTCTCTCATCCGAGGCGAATGTGTCACTTCCCCTCACGAGGCAG
ACAGACAGCTCGTCATGATGCAGAACTACGACCTGTCCCGGCAACCCGAC
GAGGAGGTTTACATCTGGGCGAACGACAGTGACGTTTTGTGATTGGTGCG
GTAAATGTTCTGTGGGAAGTGCGCGGTGTTCGCAACGGAAACACAACCTT
CTCTGGGTCGTGTATACGCCGTCGCTTGCTGTTTCTCTCTTCAGAGCAAA
TTCTCCGCGATACTGAACGCGGAGAGTTTCTGAGGCGCCTGCACAACATC
ACCGACAGGCACGCCGTATGCTTTGGTCCTCTTCTACCGCACCAGGAGAT
CAACGAGCGATTGTTGCGCGTCGCATGTATCGCTGACAACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1291:8606..9398+

>mRNA_P-littoralis_Contig1291.4.1 ID=mRNA_P-littoralis_Contig1291.4.1|Name=mRNA_P-littoralis_Contig1291.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig1291:8606..9398+ (Pylaiella littoralis U1_48)
ATGGATGGGCATGCAGCGTTGCATAGGGCGGCCTGCCGGAGAGGTGTAGC
AGCGAGTCTGGTCTTGCACAACAGAGTTGAGGCACTCGGCTATGCTGTAG
CTCAAGAGGTGCGGATGTTTGAGAGATTCAGCTGGAGGGTTACAGTCGTA
TTCGATGGCCCCCCCCCGCCTTCTAAGAGAGGGACAACGGTGGCCCGAAT
GGAGGAGAGAGAGAATGCACGCAGCAAAGCCATCCAGGCATCGGGAAACA
GTAGAGATTCTCTCTTGGTGAAGGCGGCCCACTTTTCACCTCATGTGGCT
AGAACGGCGTGCGTCCTTCGTTCTCTCATCCGAGGCGAATGTGTCACTTC
CCCTCACGAGGCAGACAGACAGCTCGTCATGATGCAGAACTACGACCTGT
CCCGGCAACCCGACGAGGAGGTTTACATCTGGGCGAACGACAGTGACGTT
TTGTGA
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