mRNA_P-littoralis_Contig1291.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1291.2.1
Unique NamemRNA_P-littoralis_Contig1291.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1291.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1291contigP-littoralis_Contig1291:4895..7739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1294
Hectar predicted targeting categoryother localisation
Exons5
Cds size822
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1291.2.1prot_P-littoralis_Contig1291.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1291 4895..7269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.588418-CDS-P-littoralis_Contig1291:4894..49671680789577.588418-CDS-P-littoralis_Contig1291:4894..4967Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 4895..4967 +
1680789577.6017983-CDS-P-littoralis_Contig1291:5254..56211680789577.6017983-CDS-P-littoralis_Contig1291:5254..5621Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 5255..5621 +
1680789577.6115913-CDS-P-littoralis_Contig1291:5881..60251680789577.6115913-CDS-P-littoralis_Contig1291:5881..6025Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 5882..6025 +
1680789577.6204345-CDS-P-littoralis_Contig1291:6817..69251680789577.6204345-CDS-P-littoralis_Contig1291:6817..6925Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 6818..6925 +
1680789577.6342273-CDS-P-littoralis_Contig1291:7139..72691680789577.6342273-CDS-P-littoralis_Contig1291:7139..7269Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 7140..7269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.6451826-UTR-P-littoralis_Contig1291:7269..77391680789577.6451826-UTR-P-littoralis_Contig1291:7269..7739Pylaiella littoralis U1_48UTRP-littoralis_Contig1291 7270..7739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1291.2.1

>prot_P-littoralis_Contig1291.2.1 ID=prot_P-littoralis_Contig1291.2.1|Name=mRNA_P-littoralis_Contig1291.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
DDEIHYYQQATGSGSFSCGGSYGQDTFCDFCYGRGRRDYSHIAARPCRRC
VLDTISVHRSHDERPPSWCHQQPDRRQPQGDGAPHQQYPAASRQHYGQEA
SGDGRLVVQASSRGCPRAGSGRQSQAGALAILIAHVDQVTALTFCFGSDK
RANRERQSSPLDLRSRKRKDEHNSPNTPAEARRNRSKYYSRRRSSDGTTE
RLGVQDRDNTENRAPVFQVFNPPAFNGHNPPLVWFCAVIVYDPIYRTRIG
RPEAARQVFRLECTPFNQAPGSC*
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mRNA from alignment at P-littoralis_Contig1291:4895..7739+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1291.2.1 ID=mRNA_P-littoralis_Contig1291.2.1|Name=mRNA_P-littoralis_Contig1291.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2845bp|location=Sequence derived from alignment at P-littoralis_Contig1291:4895..7739+ (Pylaiella littoralis U1_48)
GACGACGAGATCCACTACTATCAACAAGCAACTGGAAGCGGCAGTTTCTC
GTGCGGAGGAAGTTATGGACAAGGTGAACGTTTAAACCGCATCTATTTCA
ATCGTAACGTCGCCTCTTTCTGGCATGTGTGATGAAGAAAGGCAAGCATG
CTTACTCATATGACCAGATGGCCGGCAAGTATAGGAAGGAAGTCCTCTAT
TTTTGATACACGGTTCGATTTACTGCTCTAGTCGTGCCATCAAGCGCCGG
CGTGGGAGGGTTGTTTCTGTGCTCCCCTGTCGACATATGCCATGTGCGAC
GAACCGCTAATTTTAATCGGGACGTTTCCTCCCGTTGTGTGTCTTCTATC
GTTTCGAAAGATACCTTCTGTGACTTCTGCTATGGGAGAGGCCGGCGGGA
CTATAGCCACATCGCAGCCCGGCCTTGCCGGCGATGTGTCCTCGACACCA
TCAGCGTCCATAGATCCCATGACGAACGGCCCCCTTCTTGGTGCCATCAA
CAGCCTGATCGTCGACAACCTCAAGGCGATGGTGCCCCTCATCAACAATA
TCCTGCCGCAAGTCGACAACATTATGGACAAGAAGCTAGCGGCGATGGAA
GACTCGTTGTTCAAGCGTCTTCGCGAGGATGTCCTCGAGCAGGCTCGGGA
CGGCAGTCGCAAGCCGGCGCGCTCGCCATCCTCATCGCCCATGTGGACCA
GGTCACGGCTCTTACCTTTTGTTTCGGGTAAGGTTTTATCTGCGAATTTC
ATTTACGATCGCGTTGTAAATGTACTTCGTACGTAATTGCTGTCGACAAG
GTTACTGTTCGTGACGTTTTGCATATGCCTGCTAAGATAATAAACAACTT
ATGCAGGAGGGGTATTACGGTGCAGTTTTTTCGTGTTACAATTGACGCGT
CCACCCAGCCTATGTTTCGTACTTCGAAGTATATTTTATTGCTTGCTGAT
TTCGCGTTCGGGCGTTCACCTGTGCGTTATAAATAAGGTCCGACAAACGT
GCAAACCGTGAACGCCAGTCGTCCCCGCTCGACCTGAGGAGCCGCAAACG
GAAGGACGAACACAACTCTCCGAACACGCCGGCCGAGGCGAGGAGGAATC
GCAGTAAATATTATTCGCGGCGCAGGTCCAGGTGTGTCCATTATTTCTGC
ATGTCTGTAGACGTGTGCGGATACTCGGGCGATATACAGGAGCCCTCTTT
GTGTAGCACCCGGGGAGGGGACCAGTTATTTCGGTGGAAATACATGTGTT
GTCGGCCTATTTTGAGTGGGGGACGGAGGGATGATAAAAGCGACTGTAAA
TGAAAGCTCGGTCCACCATCACCCTGAATTGCTCTCTTTTAGAGTCGCTC
GGCAATTTTTATTGTTCCCGAAAGACCCCGACTTAATATCTTGGCCATGT
CATGTAAATTTAGTGCCGAAAAGAGTCCGTCTGTCATGCTTGATTAATAC
GGAGTACTTCGTATATCTTGAGGTTCACCCTACCTGTGCACTTTCACGTT
TTTTTTTAATGTGTATGGTGTCTTCGCATGCTACGCGACGCGGAAATGTT
GCACATCCTGTACAACTTGTCGTGCACGGCCGAAACTACCCCTTGCTTAC
CCGTAGTATTTGCCTGGCAACAAATTCGTACACAGTTTTCATTTGCGGTC
GTTACCTGGCAACAAATATTTGCACTGTTTTGTTGTTGTTGATAGTAGCC
GAGTTATGGTCATACCCCCACCCCCCGTTTCCCCCTGTTGGTGAAATATG
CCCCCCCCCCACCGTCCTCGCCGCGTCGTATTTATTTGAACTCGAGTATG
TACCGATATAAGATGAATGGTAGAAGTTGTTGCTGTAGATGTTTGTCTTC
GTTTTAAGTGAAACTCGCACATATCGGTTAAAATCTATCCTTAATTTTTC
TTGCCGCATGTATCGGTCAGCAGCGACGGTACAACGGAAAGACTTGGAGT
CCAGGACCGCGACAACACCGAGAACCGTGCGCCGGTGTTTCAAGTGTTTA
ATCCTCCCGCCTTCAACGGGCACAACCCGCCGTCTTGGACCCCGACCAAC
TTCCTTCAGCCGAGCGCTACCTTCAACCAGCATCCACAGCAGCATCCCCA
GCAGCATCCCCAGCAGCCCGTCGGATTCGCCCCACACGTCTTCCAACCAC
CCCAGTTTTCCGTGCCGGGACAGCAAGTATTGCAGAACTCAGTTTTTCGC
CGAGCTTGATACGGGCTTGTGCGTCCCCGAGTGGCGTCGATACTGTTTGG
TTTGGTTTTGCGCGGTCATTGTTTACGACCCAATTTACAGAACTCGCATC
GGTAGACCGGAGGCCGCACGGCAAGTTTTTCGTTTGGAGTGTACGCCTTT
CAACCAGGCACCAGGTAGCTGTTGACGTCTGCCAGGTTGACCTTCGCCAG
CCGTTCTGGCTTGTAAGTGGGTCGCAACACTTACCCCTTCGCCGAAGGCG
AAGGCACGGACGGCTGACAATTACTGCTTTTTTACTCTTTAGCGACCCAG
CGAAGTAGGACCCCGCCTACCACCCACAGGGCTTTATGAAAGTTTCCAGT
ATCGGTCGGTTTTCTATGTTTTCTGTGTTACTGCTGCAAGTGGATGGACG
GGATAAGTGGTAGCAGGTTCGTGTTATCATGTCGTCTATTCTGGACTCCG
GTCTACAACATCTTTCGGTGCATGTTAGCTCATCCGCCGGGGCACAATAA
AGGGAAGCCCAACCAGAATTTGTATATTTCTGTACTCTAACTTCGTGATG
CGGTGTCTTCACCTTCTCTTGGCGGCGAGAAGGCGCTCACCATATTACTT
TGGATTATATCATGTTCCGAACGTGCAGTTATATTTTGGGCTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1291:4895..7739+

>mRNA_P-littoralis_Contig1291.2.1 ID=mRNA_P-littoralis_Contig1291.2.1|Name=mRNA_P-littoralis_Contig1291.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig1291:4895..7739+ (Pylaiella littoralis U1_48)
GACGACGAGATCCACTACTATCAACAAGCAACTGGAAGCGGCAGTTTCTC
GTGCGGAGGAAGTTATGGACAAGATACCTTCTGTGACTTCTGCTATGGGA
GAGGCCGGCGGGACTATAGCCACATCGCAGCCCGGCCTTGCCGGCGATGT
GTCCTCGACACCATCAGCGTCCATAGATCCCATGACGAACGGCCCCCTTC
TTGGTGCCATCAACAGCCTGATCGTCGACAACCTCAAGGCGATGGTGCCC
CTCATCAACAATATCCTGCCGCAAGTCGACAACATTATGGACAAGAAGCT
AGCGGCGATGGAAGACTCGTTGTTCAAGCGTCTTCGCGAGGATGTCCTCG
AGCAGGCTCGGGACGGCAGTCGCAAGCCGGCGCGCTCGCCATCCTCATCG
CCCATGTGGACCAGGTCACGGCTCTTACCTTTTGTTTCGGGTCCGACAAA
CGTGCAAACCGTGAACGCCAGTCGTCCCCGCTCGACCTGAGGAGCCGCAA
ACGGAAGGACGAACACAACTCTCCGAACACGCCGGCCGAGGCGAGGAGGA
ATCGCAGTAAATATTATTCGCGGCGCAGGTCCAGCGACGGTACAACGGAA
AGACTTGGAGTCCAGGACCGCGACAACACCGAGAACCGTGCGCCGGTGTT
TCAAGTGTTTAATCCTCCCGCCTTCAACGGGCACAACCCGCCTTTGGTTT
GGTTTTGCGCGGTCATTGTTTACGACCCAATTTACAGAACTCGCATCGGT
AGACCGGAGGCCGCACGGCAAGTTTTTCGTTTGGAGTGTACGCCTTTCAA
CCAGGCACCAGGTAGCTGTTGA
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