mRNA_P-littoralis_Contig129.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.12.1
Unique NamemRNA_P-littoralis_Contig129.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:11025..12512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size377
Hectar predicted targeting categoryother localisation
Exons3
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.7345858-CDS-P-littoralis_Contig129:11024..112031680789573.7345858-CDS-P-littoralis_Contig129:11024..11203Pylaiella littoralis U1_48CDSP-littoralis_Contig129 11025..11203 +
1680789573.7469873-CDS-P-littoralis_Contig129:11947..120601680789573.7469873-CDS-P-littoralis_Contig129:11947..12060Pylaiella littoralis U1_48CDSP-littoralis_Contig129 11948..12060 +
1680789573.755306-CDS-P-littoralis_Contig129:12429..124851680789573.755306-CDS-P-littoralis_Contig129:12429..12485Pylaiella littoralis U1_48CDSP-littoralis_Contig129 12430..12485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.76534-UTR-P-littoralis_Contig129:12485..125121680789573.76534-UTR-P-littoralis_Contig129:12485..12512Pylaiella littoralis U1_48UTRP-littoralis_Contig129 12486..12512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.12.1prot_P-littoralis_Contig129.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 11025..12485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.12.1

>prot_P-littoralis_Contig129.12.1 ID=prot_P-littoralis_Contig129.12.1|Name=mRNA_P-littoralis_Contig129.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
GCLDLRQSPVESNVQPWFLSAAKRYGGVGAAAIITTQTFSLDVAAAAATT
LLITILLHHCRCNEDSRTNRRNRGSASACAGVAALRPHSRTSRPCKIGKG
HPWRSTLCLKSMKGV*
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mRNA from alignment at P-littoralis_Contig129:11025..12512+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.12.1 ID=mRNA_P-littoralis_Contig129.12.1|Name=mRNA_P-littoralis_Contig129.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1488bp|location=Sequence derived from alignment at P-littoralis_Contig129:11025..12512+ (Pylaiella littoralis U1_48)
GGCTGCCTGGACCTTCGTCAGTCACCCGTCGAGAGCAATGTTCAACCTTG
GTTTCTATCCGCTGCCAAAAGATACGGGGGAGTAGGAGCAGCAGCAATAA
TAACAACGCAGACCTTCAGCCTGGATGTCGCTGCCGCTGCCGCCACTACG
CTTCTGATCACAATACTGCTGCATCATTGGTGAGATGAGAGCGGGTGGGG
AGACAGGATGCTCACGAAAGCTCTGCTTGGATATATGGTTGCCTTCTTTG
TGCGTCGTTCAATGCAACAAGTACGTACACGTATCGTATCGTTTACAAGA
CCTGTAACTTGATTTACTTCTACTGTACTGTACTCTACTCTGAATGTCTT
GAAATGCTCCGTCTATAAAACAACCTCAACAGCAGGAGCAACAGCAGCAA
CAGCAGCAGTGCCAACTGCTGCAGTGTCCCCACCACATCTGCACATATCG
CAACAACGGCAGCACTGTATCCATCACATGAGTACATGCAGGTAGTGTGT
GTATCAGTGTGTTCACATGACACTCCATCCCTTCCGGACGCCGGTCTACA
CCTTTCGGCACGGAGTATGTGTGTGGGCTCATCATCAGCCGTGGGCACAC
AGATCGTCATCCCAGATGTTTCTTGCTCCCCCTTCCTCGCCCGGGACTTG
CCTTTATTTTTACCTCGAGAAGGGTTCGGCCGTCCCCTCGTCTCGTCAAC
TTTCGAACCGAATTGTGCAGTCGTTCGTATGCATGATGTGCGAAAAAAAA
CCAGCACTTGGACGCTTGTGCAATGCTGCTGTACTGCTTGTACAGACTTT
GAAGTAGCATCGAACGGTGCTCTCGGTGAGGTCAAACTAACTCGGTCCGT
AAATTATCGCTGAGTTTTTGGTGTTGTTATTTGACCGCACTTGTTTTGGG
TTGCTCAATCAACACCACACCAGCAGATGCAACGAGGACAGCAGAACGAA
CAGGAGGAACAGGGGCTCAGCCAGCGCTTGTGCAGGCGTGGCAGCCTTGA
GGCCTCACTCCCGCACGAGTCGTCCCTGTAAAATCGGTGGGTACATCACA
AGCGCACTCACGCACACATTCCACGCACACTGACTGAACGCACACGCGGG
TGAGTGTGAGGGGTGAGGAGCTCATTCGTTGACATCCACCTCGCCTCGAA
ACCAACCTCGTGTCGAATGTATTGCCTGGTTTGTTTTCCGAAGTTGACGA
CCTAAGCACAACCTGGAGCTGAAACGCTGCTGGGCGTTCATTTACCGTGT
AGACTAATGTGGAGACAGAAATAGAAAACAAGTTTGAACAAGCTCCAGCT
GCAGCCCCATGATGTGTCATAACTGCAAAAACGAAAACCAAAAGCTGAGA
CTGACGATAACCTGAGACGCTCCTGTTGGCCCCGCTCACTTCGCGTCAAA
CCCAGGAAAAGGGCACCCCTGGAGATCGACCTTGTGCCTGAAGTCTATGA
AGGGGGTCTGAAGGTTCGGGAGGCTAGGTCTTGGTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:11025..12512+

>mRNA_P-littoralis_Contig129.12.1 ID=mRNA_P-littoralis_Contig129.12.1|Name=mRNA_P-littoralis_Contig129.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig129:11025..12512+ (Pylaiella littoralis U1_48)
GGCTGCCTGGACCTTCGTCAGTCACCCGTCGAGAGCAATGTTCAACCTTG
GTTTCTATCCGCTGCCAAAAGATACGGGGGAGTAGGAGCAGCAGCAATAA
TAACAACGCAGACCTTCAGCCTGGATGTCGCTGCCGCTGCCGCCACTACG
CTTCTGATCACAATACTGCTGCATCATTGCAGATGCAACGAGGACAGCAG
AACGAACAGGAGGAACAGGGGCTCAGCCAGCGCTTGTGCAGGCGTGGCAG
CCTTGAGGCCTCACTCCCGCACGAGTCGTCCCTGTAAAATCGGAAAAGGG
CACCCCTGGAGATCGACCTTGTGCCTGAAGTCTATGAAGGGGGTCTGA
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